Wall clock time and date at job start Mon Mar 30 2020 03:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21288 * 119.99602 * 2 1 4 4 N 1.34767 * 120.00277 * 179.97438 * 2 1 3 5 5 C 1.46496 * 120.00379 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47518 * 180.02562 * 5 4 2 7 7 H 1.09000 * 110.01623 * 306.39233 * 6 5 4 8 8 C 1.53872 * 110.03323 * 67.83559 * 6 5 4 9 9 C 1.54266 * 106.60044 * 119.28544 * 8 6 5 10 10 C 1.54893 * 104.19500 * 23.61099 * 9 8 6 11 11 H 1.09000 * 110.75571 * 80.37081 * 10 9 8 12 12 C 1.53001 * 110.75349 * 203.74603 * 10 9 8 13 13 C 1.50702 * 109.46781 * 288.32441 * 12 10 9 14 14 H 1.07999 * 120.00263 * 0.02562 * 13 12 10 15 15 C 1.37881 * 120.00145 * 180.02562 * 13 12 10 16 16 N 1.31522 * 119.99551 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00354 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47064 * 89.99980 * 17 15 13 19 19 H 1.48498 * 109.47404 * 210.00102 * 17 15 13 20 20 H 1.48502 * 109.46931 * 330.00073 * 17 15 13 21 21 C 1.54266 * 110.03393 * 185.00113 * 6 5 4 22 22 H 1.08995 * 109.47462 * 269.99541 * 1 2 3 23 23 H 1.08998 * 109.47317 * 30.00352 * 1 2 3 24 24 H 1.09006 * 109.46531 * 149.99747 * 1 2 3 25 25 H 0.96997 * 120.00144 * 0.02562 * 4 2 1 26 26 H 1.09010 * 109.47131 * 60.00038 * 5 4 2 27 27 H 1.09003 * 109.47290 * 300.00349 * 5 4 2 28 28 H 1.09002 * 110.03208 * 238.56771 * 8 6 5 29 29 H 1.09000 * 110.03462 * 359.95167 * 8 6 5 30 30 H 1.09002 * 110.48438 * 142.28717 * 9 8 6 31 31 H 1.08998 * 110.48431 * 264.79545 * 9 8 6 32 32 H 1.09000 * 109.47234 * 48.32327 * 12 10 9 33 33 H 1.08996 * 109.46795 * 168.32836 * 12 10 9 34 34 H 0.96995 * 119.99224 * 179.97438 * 16 15 13 35 35 H 1.09001 * 110.48620 * 335.78481 * 21 6 5 36 36 H 1.09004 * 110.48798 * 98.42315 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.1560 -2.6096 0.0010 7 1 3.7072 -3.1641 0.8251 8 6 3.8180 -3.2880 -1.3381 9 6 5.1618 -3.6936 -1.9782 10 6 6.1365 -3.8011 -0.7792 11 1 6.0127 -4.7542 -0.2651 12 6 7.5839 -3.6150 -1.2388 13 6 8.0243 -4.8291 -2.0155 14 1 7.3402 -5.6510 -2.1665 15 6 9.3007 -4.8907 -2.5332 16 7 10.1337 -3.8896 -2.3497 17 14 9.8464 -6.3952 -3.4965 18 1 9.5393 -6.1994 -4.9362 19 1 11.3085 -6.5898 -3.3243 20 1 9.1252 -7.5925 -2.9948 21 6 5.6933 -2.6265 0.1279 22 1 -0.3634 -0.0001 1.0276 23 1 -0.3634 0.8899 -0.5139 24 1 -0.3632 -0.8900 -0.5139 25 1 1.6960 -2.0071 0.0005 26 1 4.0089 -0.6530 0.8912 27 1 4.0096 -0.6534 -0.8889 28 1 3.2053 -4.1726 -1.1643 29 1 3.2899 -2.5900 -1.9876 30 1 5.0693 -4.6557 -2.4821 31 1 5.4974 -2.9282 -2.6779 32 1 7.6526 -2.7324 -1.8746 33 1 8.2278 -3.4871 -0.3687 34 1 11.0318 -3.9331 -2.7136 35 1 6.1160 -1.6876 -0.2299 36 1 5.9888 -2.8098 1.1610 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261041784.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:06 Heat of formation + Delta-G solvation = -75.891222 kcal Electronic energy + Delta-G solvation = -15329.241008 eV Core-core repulsion = 12811.692389 eV Total energy + Delta-G solvation = -2517.548618 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.72797 -38.07908 -34.73034 -32.94498 -31.05796 -29.65438 -28.57314 -26.37026 -23.98091 -22.26365 -20.67955 -19.46003 -18.96035 -16.88602 -16.30609 -16.15177 -15.65815 -15.05587 -14.54637 -13.74311 -13.51258 -13.32477 -12.91923 -12.79812 -12.43592 -12.15819 -12.05666 -11.40460 -11.25831 -10.84136 -10.70451 -10.50941 -10.41388 -10.20254 -10.07671 -9.92743 -9.61699 -9.14252 -9.08823 -8.93385 -8.31664 -5.96775 -3.98457 2.56587 3.19894 3.32902 3.39389 3.42189 4.47881 4.67881 4.86874 4.96998 5.02169 5.13589 5.16153 5.38896 5.56746 5.63194 5.65992 5.77548 5.97251 6.06490 6.11316 6.18149 6.29070 6.39623 6.46635 6.55464 6.75161 6.90892 7.04171 7.20209 7.44022 7.71122 7.86840 8.03637 8.15266 8.46923 9.08428 9.65170 11.14559 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.065113 B = 0.004564 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.919689 B = 6133.827056 C = 6300.475319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.505 3.495 3 O -0.551 6.551 4 N -0.728 5.728 5 C 0.123 3.877 6 C -0.103 4.103 7 H 0.071 0.929 8 C -0.123 4.123 9 C -0.107 4.107 10 C -0.081 4.081 11 H 0.061 0.939 12 C 0.028 3.972 13 C -0.515 4.515 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.889 3.111 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.114 4.114 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.078 0.922 25 H 0.400 0.600 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.017 0.983 33 H 0.015 0.985 34 H 0.260 0.740 35 H 0.066 0.934 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.731 2.590 4.715 18.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.292 3.708 3 O -0.429 6.429 4 N -0.380 5.380 5 C 0.000 4.000 6 C -0.122 4.122 7 H 0.089 0.911 8 C -0.161 4.161 9 C -0.145 4.145 10 C -0.099 4.099 11 H 0.079 0.921 12 C -0.009 4.009 13 C -0.553 4.553 14 H 0.072 0.928 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.717 3.283 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.152 4.152 22 H 0.110 0.890 23 H 0.110 0.890 24 H 0.097 0.903 25 H 0.234 0.766 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.035 0.965 33 H 0.033 0.967 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.112 3.410 4.676 18.064 hybrid contribution 0.175 -1.266 -0.566 1.398 sum -16.937 2.143 4.111 17.560 Atomic orbital electron populations 1.21881 0.92003 1.04756 1.04571 1.20809 0.90547 0.83653 0.75830 1.90732 1.70896 1.31492 1.49782 1.46189 1.08066 1.08538 1.75177 1.21587 0.78627 0.97454 1.02302 1.22052 0.97990 0.93793 0.98348 0.91098 1.22306 0.98893 0.99252 0.95658 1.22286 0.92971 1.01047 0.98204 1.22177 0.97948 0.95884 0.93910 0.92052 1.19105 0.88728 0.96985 0.96051 1.21246 0.97525 1.03086 1.33447 0.92766 1.25028 0.96888 0.96119 0.96511 1.69969 1.06536 1.31098 1.45981 0.86640 0.77766 0.83457 0.80403 1.20751 1.21302 1.19946 1.22474 0.91960 1.00624 1.00172 0.89035 0.89034 0.90265 0.76593 0.91681 0.91211 0.92525 0.92423 0.92106 0.91898 0.96474 0.96661 0.93081 0.91484 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 10.30 36.01 0.37 -0.83 16 2 C 0.50 5.97 7.94 -10.99 -0.09 5.89 16 3 O -0.55 -9.27 17.10 5.55 0.09 -9.17 16 4 N -0.73 -7.70 5.34 -60.29 -0.32 -8.03 16 5 C 0.12 1.60 4.68 -4.05 -0.02 1.58 16 6 C -0.10 -1.34 2.96 -89.50 -0.27 -1.61 16 7 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 8 C -0.12 -1.67 6.18 -25.61 -0.16 -1.82 16 9 C -0.11 -1.91 5.98 -25.07 -0.15 -2.06 16 10 C -0.08 -1.59 2.82 -88.63 -0.25 -1.84 16 11 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 12 C 0.03 0.72 4.47 -27.88 -0.12 0.59 16 13 C -0.51 -14.36 8.82 -34.44 -0.30 -14.66 16 14 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 15 C 0.06 1.58 5.46 -17.81 -0.10 1.49 16 16 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 17 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 C -0.11 -1.87 5.81 -25.07 -0.15 -2.01 16 22 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.40 3.09 8.35 -40.82 -0.34 2.74 16 26 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.74 7.61 -51.93 -0.40 0.34 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 1.20 7.94 -51.93 -0.41 0.78 16 32 H 0.02 0.46 7.99 -51.93 -0.41 0.05 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 35 H 0.07 1.15 7.76 -51.93 -0.40 0.75 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 297.29 15.07 4.48 4.48 Total: -1.00 -32.55 297.29 -7.42 -39.97 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -6.16 Total: -2.29 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -1.23 Total: -15.30 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.41 Total: -34.32 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.17 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.55 -7.42 -39.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261041784.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.925 kcal (2) G-P(sol) polarization free energy of solvation -32.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds