Wall clock time and date at job start Mon Mar 30 2020 03:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21288 * 119.99602 * 2 1 4 4 N 1.34767 * 120.00277 * 179.97438 * 2 1 3 5 5 C 1.46496 * 120.00379 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47518 * 180.02562 * 5 4 2 7 7 H 1.09000 * 110.01623 * 306.39233 * 6 5 4 8 8 C 1.53872 * 110.03323 * 67.83559 * 6 5 4 9 9 C 1.54266 * 106.60044 * 119.28544 * 8 6 5 10 10 C 1.54893 * 104.19500 * 23.61099 * 9 8 6 11 11 H 1.09000 * 110.75571 * 80.37081 * 10 9 8 12 12 C 1.53001 * 110.75349 * 203.74603 * 10 9 8 13 13 C 1.50702 * 109.46781 * 288.32441 * 12 10 9 14 14 H 1.07999 * 120.00263 * 0.02562 * 13 12 10 15 15 C 1.37881 * 120.00145 * 180.02562 * 13 12 10 16 16 N 1.31522 * 119.99551 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00354 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47064 * 89.99980 * 17 15 13 19 19 H 1.48498 * 109.47404 * 210.00102 * 17 15 13 20 20 H 1.48502 * 109.46931 * 330.00073 * 17 15 13 21 21 C 1.54266 * 110.03393 * 185.00113 * 6 5 4 22 22 H 1.08995 * 109.47462 * 269.99541 * 1 2 3 23 23 H 1.08998 * 109.47317 * 30.00352 * 1 2 3 24 24 H 1.09006 * 109.46531 * 149.99747 * 1 2 3 25 25 H 0.96997 * 120.00144 * 0.02562 * 4 2 1 26 26 H 1.09010 * 109.47131 * 60.00038 * 5 4 2 27 27 H 1.09003 * 109.47290 * 300.00349 * 5 4 2 28 28 H 1.09002 * 110.03208 * 238.56771 * 8 6 5 29 29 H 1.09000 * 110.03462 * 359.95167 * 8 6 5 30 30 H 1.09002 * 110.48438 * 142.28717 * 9 8 6 31 31 H 1.08998 * 110.48431 * 264.79545 * 9 8 6 32 32 H 1.09000 * 109.47234 * 48.32327 * 12 10 9 33 33 H 1.08996 * 109.46795 * 168.32836 * 12 10 9 34 34 H 0.96995 * 119.99224 * 179.97438 * 16 15 13 35 35 H 1.09001 * 110.48620 * 335.78481 * 21 6 5 36 36 H 1.09004 * 110.48798 * 98.42315 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.1560 -2.6096 0.0010 7 1 3.7072 -3.1641 0.8251 8 6 3.8180 -3.2880 -1.3381 9 6 5.1618 -3.6936 -1.9782 10 6 6.1365 -3.8011 -0.7792 11 1 6.0127 -4.7542 -0.2651 12 6 7.5839 -3.6150 -1.2388 13 6 8.0243 -4.8291 -2.0155 14 1 7.3402 -5.6510 -2.1665 15 6 9.3007 -4.8907 -2.5332 16 7 10.1337 -3.8896 -2.3497 17 14 9.8464 -6.3952 -3.4965 18 1 9.5393 -6.1994 -4.9362 19 1 11.3085 -6.5898 -3.3243 20 1 9.1252 -7.5925 -2.9948 21 6 5.6933 -2.6265 0.1279 22 1 -0.3634 -0.0001 1.0276 23 1 -0.3634 0.8899 -0.5139 24 1 -0.3632 -0.8900 -0.5139 25 1 1.6960 -2.0071 0.0005 26 1 4.0089 -0.6530 0.8912 27 1 4.0096 -0.6534 -0.8889 28 1 3.2053 -4.1726 -1.1643 29 1 3.2899 -2.5900 -1.9876 30 1 5.0693 -4.6557 -2.4821 31 1 5.4974 -2.9282 -2.6779 32 1 7.6526 -2.7324 -1.8746 33 1 8.2278 -3.4871 -0.3687 34 1 11.0318 -3.9331 -2.7136 35 1 6.1160 -1.6876 -0.2299 36 1 5.9888 -2.8098 1.1610 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261041784.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:06 Heat of formation + Delta-G solvation = -97.551445 kcal Electronic energy + Delta-G solvation = -15330.180265 eV Core-core repulsion = 12811.692389 eV Total energy + Delta-G solvation = -2518.487876 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.73880 -39.38044 -36.02062 -34.84705 -32.42386 -30.83878 -29.73842 -28.05096 -25.37248 -24.02865 -21.68558 -20.67355 -20.47900 -18.43326 -17.74507 -17.27480 -16.71436 -16.53673 -16.15396 -15.05164 -14.75810 -14.52133 -14.30042 -14.10122 -13.60567 -13.40668 -13.13569 -13.06784 -12.92280 -12.66569 -12.31931 -11.94908 -11.87979 -11.70808 -11.33576 -11.25864 -11.08069 -11.01655 -10.77701 -10.52121 -10.08691 -8.17351 -6.27484 1.39809 1.41065 1.51984 1.67417 2.33532 2.42222 3.15727 3.70324 3.75799 3.88957 4.02948 4.36378 4.43483 4.55908 4.60720 4.64672 4.70640 4.80172 4.85921 4.91230 4.96593 5.09849 5.14114 5.15695 5.28702 5.40380 5.43774 5.50927 5.56763 5.60579 5.82530 5.91555 6.29690 6.63118 6.89850 7.31180 7.41375 8.94641 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.065113 B = 0.004564 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.919689 B = 6133.827056 C = 6300.475319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.498 3.502 3 O -0.610 6.610 4 N -0.714 5.714 5 C 0.129 3.871 6 C -0.086 4.086 7 H 0.101 0.899 8 C -0.110 4.110 9 C -0.108 4.108 10 C -0.080 4.080 11 H 0.065 0.935 12 C 0.032 3.968 13 C -0.530 4.530 14 H 0.062 0.938 15 C -0.005 4.005 16 N -0.937 5.937 17 Si 0.962 3.038 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.261 1.261 21 C -0.113 4.113 22 H 0.111 0.889 23 H 0.089 0.911 24 H 0.109 0.891 25 H 0.419 0.581 26 H 0.056 0.944 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.038 0.962 32 H -0.015 1.015 33 H -0.015 1.015 34 H 0.261 0.739 35 H 0.048 0.952 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.401 0.786 4.914 21.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.287 3.713 3 O -0.492 6.492 4 N -0.367 5.367 5 C 0.005 3.995 6 C -0.105 4.105 7 H 0.120 0.880 8 C -0.148 4.148 9 C -0.146 4.146 10 C -0.098 4.098 11 H 0.083 0.917 12 C -0.005 4.005 13 C -0.568 4.568 14 H 0.080 0.920 15 C -0.202 4.202 16 N -0.578 5.578 17 Si 0.787 3.213 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.185 1.185 21 C -0.151 4.151 22 H 0.130 0.870 23 H 0.108 0.892 24 H 0.128 0.872 25 H 0.256 0.744 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.004 0.996 33 H 0.003 0.997 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.824 1.562 4.879 20.475 hybrid contribution 1.053 -0.679 -0.618 1.397 sum -18.771 0.882 4.261 19.269 Atomic orbital electron populations 1.21892 0.87726 1.06225 1.06276 1.21751 0.92555 0.82778 0.74232 1.90712 1.72442 1.33586 1.52508 1.46047 1.06929 1.09405 1.74298 1.21324 0.80344 0.96985 1.00839 1.21903 0.95153 0.94092 0.99336 0.88048 1.22223 0.96523 1.00715 0.95308 1.22228 0.95024 1.00223 0.97132 1.22037 0.94700 0.97419 0.95693 0.91667 1.19007 0.92302 0.95111 0.94101 1.21676 0.97891 1.03821 1.33404 0.92020 1.26004 0.97095 0.99423 0.97673 1.70118 1.06983 1.33441 1.47296 0.85483 0.77294 0.79632 0.78871 1.19958 1.21017 1.18479 1.22400 0.94777 0.98207 0.99721 0.87040 0.89173 0.87189 0.74383 0.92590 0.93601 0.89477 0.91385 0.92489 0.94289 0.99640 0.99675 0.92983 0.93312 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 10.30 71.24 0.73 -0.98 16 2 C 0.50 10.86 7.94 87.66 0.70 11.56 16 3 O -0.61 -20.54 17.10 -3.06 -0.05 -20.59 16 4 N -0.71 -13.21 5.34 -463.06 -2.47 -15.68 16 5 C 0.13 3.19 4.68 86.38 0.40 3.60 16 6 C -0.09 -2.04 2.96 -10.07 -0.03 -2.07 16 7 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 8 C -0.11 -2.65 6.18 31.32 0.19 -2.46 16 9 C -0.11 -3.79 5.98 31.67 0.19 -3.60 16 10 C -0.08 -3.18 2.82 -9.50 -0.03 -3.21 16 11 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 12 C 0.03 1.70 4.47 29.85 0.13 1.83 16 13 C -0.53 -30.14 8.82 25.60 0.23 -29.92 16 14 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 15 C 0.00 -0.29 5.46 84.65 0.46 0.17 16 16 N -0.94 -58.27 13.29 21.45 0.28 -57.98 16 17 Si 0.96 44.63 29.54 68.60 2.03 46.66 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 21 C -0.11 -3.67 5.81 31.67 0.18 -3.49 16 22 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.11 0.51 8.14 -2.38 -0.02 0.49 16 25 H 0.42 4.62 8.35 -92.71 -0.77 3.85 16 26 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.07 1.54 7.61 -2.39 -0.02 1.52 16 30 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.04 1.52 7.94 -2.39 -0.02 1.50 16 32 H -0.01 -0.87 7.99 -2.39 -0.02 -0.89 16 33 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 34 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.05 1.75 7.76 -2.39 -0.02 1.73 16 36 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -74.13 297.29 3.22 -70.91 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: 0.26 Total: 5.24 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: 3.17 Total: -28.55 kcal Atomic # 7 Polarization: -71.48 SS G_CDS: -2.19 Total: -73.66 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.05 Total: -20.59 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -74.13 3.22 -70.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261041784.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.638 kcal (2) G-P(sol) polarization free energy of solvation -74.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds