Wall clock time and date at job start Mon Mar 30 2020 02:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47375 * 2 1 4 4 C 1.50703 * 109.47287 * 239.99995 * 2 1 3 5 5 H 1.08004 * 119.99984 * 240.00425 * 4 2 1 6 6 C 1.37879 * 119.99984 * 59.99686 * 4 2 1 7 7 N 1.31509 * 119.99664 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99834 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46966 * 90.00234 * 8 6 4 10 10 H 1.48497 * 109.47058 * 209.99903 * 8 6 4 11 11 H 1.48496 * 109.47300 * 330.00112 * 8 6 4 12 12 N 1.46499 * 109.47303 * 120.00086 * 2 1 3 13 13 C 1.47199 * 119.78660 * 239.99967 * 12 2 1 14 14 C 1.52981 * 108.66499 * 251.97920 * 13 12 2 15 15 C 1.51782 * 110.88297 * 273.52952 * 14 13 12 16 16 H 1.08992 * 108.61899 * 305.88786 * 15 14 13 17 17 C 1.52999 * 108.61637 * 188.11961 * 15 14 13 18 18 C 1.51796 * 113.80785 * 67.00635 * 15 14 13 19 19 C 1.53061 * 110.70640 * 293.21249 * 18 15 14 20 20 C 1.33372 * 119.79087 * 60.02200 * 12 2 1 21 21 O 1.21283 * 119.88603 * 359.68710 * 20 12 2 22 22 H 1.09001 * 109.47044 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46767 * 300.00048 * 1 2 3 24 24 H 1.08994 * 109.47064 * 59.99996 * 1 2 3 25 25 H 0.97003 * 120.00031 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.60406 * 132.22183 * 13 12 2 27 27 H 1.09000 * 109.60285 * 11.73342 * 13 12 2 28 28 H 1.08997 * 109.19623 * 153.17173 * 14 13 12 29 29 H 1.09002 * 109.19708 * 33.88965 * 14 13 12 30 30 H 1.08994 * 109.47614 * 295.74414 * 17 15 14 31 31 H 1.09000 * 109.46623 * 55.74060 * 17 15 14 32 32 H 1.09003 * 109.47327 * 175.73896 * 17 15 14 33 33 H 1.09002 * 109.22490 * 53.51862 * 18 15 14 34 34 H 1.08997 * 109.22002 * 172.91124 * 18 15 14 35 35 H 1.09000 * 109.63308 * 204.59843 * 19 18 15 36 36 H 1.08996 * 109.63587 * 325.18942 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3428 -2.1618 -4.4118 10 1 2.4866 -0.1415 -5.1123 11 1 3.6293 -1.7584 -3.7122 12 7 2.0184 -0.6906 1.1961 13 6 2.8644 0.0293 2.1620 14 6 4.2958 -0.4982 2.0475 15 6 4.4934 -1.7215 2.9240 16 1 4.1947 -1.4720 3.9421 17 6 5.9800 -2.0829 2.9303 18 6 3.7018 -2.9347 2.4704 19 6 2.1992 -2.6919 2.6322 20 6 1.6940 -1.9677 1.4028 21 8 0.9920 -2.5499 0.6033 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 0.7095 1.1617 -3.4844 26 1 2.4917 -0.1403 3.1722 27 1 2.8486 1.0959 1.9381 28 1 4.9910 0.2815 2.3585 29 1 4.4978 -0.7644 1.0099 30 1 6.2879 -2.3722 1.9256 31 1 6.5622 -1.2202 3.2544 32 1 6.1492 -2.9136 3.6155 33 1 3.9221 -3.1355 1.4219 34 1 3.9925 -3.7974 3.0697 35 1 1.6826 -3.6465 2.7316 36 1 2.0200 -2.0814 3.5172 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261062185.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:10 Heat of formation + Delta-G solvation = -50.216675 kcal Electronic energy + Delta-G solvation = -16691.594667 eV Core-core repulsion = 14175.159380 eV Total energy + Delta-G solvation = -2516.435287 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.63784 -36.58883 -34.83793 -32.69590 -31.00590 -29.88710 -27.49575 -25.06229 -24.10336 -23.31482 -21.20402 -19.86691 -17.83780 -16.59685 -16.22233 -15.14590 -14.48258 -14.38418 -14.10040 -13.69050 -13.04780 -13.00447 -12.63717 -12.32505 -11.93069 -11.68329 -11.58594 -11.44928 -11.08733 -10.94992 -10.67139 -10.57670 -10.44520 -10.35460 -10.17514 -10.09488 -9.90361 -9.12203 -8.49579 -8.16911 -7.47752 -5.93277 -3.95489 3.37623 3.43525 3.46661 3.70163 4.12624 4.54071 4.83448 4.96214 4.98831 5.22128 5.38790 5.56626 5.58253 5.73248 5.77512 5.82286 5.86863 5.89381 6.05705 6.14943 6.25290 6.30564 6.32409 6.48062 6.70088 6.86970 7.08817 7.25254 7.34562 7.83328 7.96680 8.18863 8.30945 8.73228 9.03126 9.35607 9.68942 11.12695 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029299 B = 0.009507 C = 0.008799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.425737 B = 2944.554441 C = 3181.334735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.269 3.731 3 H 0.040 0.960 4 C -0.494 4.494 5 H 0.056 0.944 6 C 0.058 3.942 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.595 5.595 13 C 0.113 3.887 14 C -0.136 4.136 15 C -0.090 4.090 16 H 0.064 0.936 17 C -0.148 4.148 18 C -0.105 4.105 19 C -0.142 4.142 20 C 0.507 3.493 21 O -0.535 6.535 22 H 0.052 0.948 23 H 0.002 0.998 24 H 0.088 0.912 25 H 0.260 0.740 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.056 -2.207 12.050 14.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.169 3.831 3 H 0.058 0.942 4 C -0.533 4.533 5 H 0.074 0.926 6 C -0.142 4.142 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.201 1.201 12 N -0.327 5.327 13 C -0.011 4.011 14 C -0.174 4.174 15 C -0.108 4.108 16 H 0.082 0.918 17 C -0.205 4.205 18 C -0.143 4.143 19 C -0.182 4.182 20 C 0.293 3.707 21 O -0.412 6.412 22 H 0.071 0.929 23 H 0.021 0.979 24 H 0.107 0.893 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.608 -2.379 11.465 13.446 hybrid contribution 0.379 -0.378 -0.798 0.961 sum 6.987 -2.758 10.668 13.047 Atomic orbital electron populations 1.22145 0.98161 1.01321 0.99735 1.18859 0.91435 0.91926 0.80855 0.94188 1.21256 1.30277 1.11754 0.89997 0.92552 1.24845 0.95365 0.95131 0.98840 1.69871 1.37435 1.23190 1.23358 0.86510 0.79147 0.79313 0.82492 1.20709 1.21410 1.20144 1.48258 1.49344 1.11082 1.24001 1.21635 0.89906 0.97062 0.92476 1.21885 0.97095 0.96786 1.01639 1.20765 0.95331 0.95242 0.99491 0.91758 1.21899 0.95872 1.00945 1.01795 1.21241 0.93128 0.97488 1.02450 1.22029 0.97151 1.01385 0.97683 1.20055 0.81132 0.82295 0.87240 1.90673 1.37888 1.65933 1.46695 0.92870 0.97900 0.89326 0.93047 0.92164 0.90266 0.91520 0.90366 0.92649 0.92835 0.93059 0.91389 0.91636 0.89634 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 8.89 37.16 0.33 -3.73 16 2 C 0.27 6.91 2.68 -69.08 -0.18 6.73 16 3 H 0.04 1.06 7.59 -51.93 -0.39 0.66 16 4 C -0.49 -14.13 7.56 -34.44 -0.26 -14.39 16 5 H 0.06 1.68 7.46 -52.48 -0.39 1.29 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.90 -26.20 11.32 55.43 0.63 -25.57 16 8 Si 0.90 22.56 29.54 -169.99 -5.02 17.54 16 9 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 12 N -0.59 -12.63 2.41 -167.00 -0.40 -13.03 16 13 C 0.11 1.80 5.90 -3.67 -0.02 1.78 16 14 C -0.14 -1.93 4.98 -27.36 -0.14 -2.06 16 15 C -0.09 -1.10 2.21 -91.85 -0.20 -1.30 16 16 H 0.06 0.69 7.88 -51.93 -0.41 0.28 16 17 C -0.15 -1.57 9.03 37.16 0.34 -1.24 16 18 C -0.11 -1.46 4.91 -27.31 -0.13 -1.59 16 19 C -0.14 -2.22 5.57 -27.53 -0.15 -2.38 16 20 C 0.51 10.94 6.07 -11.28 -0.07 10.87 16 21 O -0.53 -14.14 14.08 5.55 0.08 -14.06 16 22 H 0.05 1.47 6.12 -51.93 -0.32 1.16 16 23 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 24 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 25 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.06 0.81 6.71 -51.93 -0.35 0.46 16 27 H 0.08 1.23 7.62 -51.93 -0.40 0.83 16 28 H 0.07 0.80 8.06 -51.93 -0.42 0.38 16 29 H 0.08 1.36 8.05 -51.93 -0.42 0.94 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.51 8.09 -51.93 -0.42 0.09 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 1.12 7.86 -51.93 -0.41 0.71 16 34 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 35 H 0.09 1.29 8.13 -51.93 -0.42 0.87 16 36 H 0.08 1.04 6.77 -51.93 -0.35 0.69 16 LS Contribution 279.00 15.07 4.20 4.20 Total: -1.00 -31.91 279.00 -6.94 -38.85 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -5.83 Total: -2.20 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -0.59 Total: -5.73 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.23 Total: -38.60 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.08 Total: -14.06 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.91 -6.94 -38.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261062185.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.370 kcal (2) G-P(sol) polarization free energy of solvation -31.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds