Wall clock time and date at job start Mon Mar 30 2020 02:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47003 * 2 1 4 4 C 1.50701 * 109.47183 * 120.00411 * 2 1 3 5 5 H 1.08004 * 119.99911 * 120.00313 * 4 2 1 6 6 C 1.37875 * 119.99838 * 299.99735 * 4 2 1 7 7 N 1.31516 * 119.99994 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99839 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47271 * 90.00263 * 8 6 4 10 10 H 1.48503 * 109.47043 * 210.00324 * 8 6 4 11 11 H 1.48501 * 109.47517 * 330.00231 * 8 6 4 12 12 N 1.46506 * 109.47143 * 240.00504 * 2 1 3 13 13 C 1.47190 * 119.78483 * 119.99695 * 12 2 1 14 14 C 1.52996 * 108.66349 * 108.03213 * 13 12 2 15 15 C 1.51773 * 110.87707 * 86.45958 * 14 13 12 16 16 H 1.09010 * 108.61904 * 53.98288 * 15 14 13 17 17 C 1.53003 * 108.61534 * 171.87997 * 15 14 13 18 18 C 1.51787 * 113.81694 * 293.00147 * 15 14 13 19 19 C 1.53059 * 110.74655 * 66.81385 * 18 15 14 20 20 C 1.33369 * 119.78197 * 299.99802 * 12 2 1 21 21 O 1.21280 * 119.89730 * 0.32218 * 20 12 2 22 22 H 1.09001 * 109.47325 * 60.00016 * 1 2 3 23 23 H 1.09002 * 109.46983 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47331 * 299.99437 * 1 2 3 25 25 H 0.97000 * 119.99953 * 179.97438 * 7 6 4 26 26 H 1.08996 * 109.60818 * 348.27748 * 13 12 2 27 27 H 1.09001 * 109.60216 * 227.77901 * 13 12 2 28 28 H 1.08997 * 109.19086 * 206.81952 * 14 13 12 29 29 H 1.08991 * 109.19681 * 326.14734 * 14 13 12 30 30 H 1.09001 * 109.46768 * 60.00161 * 17 15 14 31 31 H 1.08999 * 109.47691 * 180.02562 * 17 15 14 32 32 H 1.09001 * 109.47331 * 300.00561 * 17 15 14 33 33 H 1.08998 * 109.22694 * 187.13989 * 18 15 14 34 34 H 1.08998 * 109.21977 * 306.49144 * 18 15 14 35 35 H 1.09005 * 109.63514 * 34.78236 * 19 18 15 36 36 H 1.08998 * 109.63372 * 155.17999 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3225 -1.1197 4.0078 9 1 3.6305 -0.5442 4.4118 10 1 1.3445 -0.9493 5.1122 11 1 2.4881 -2.5656 3.7121 12 7 2.0183 -0.6905 -1.1963 13 6 2.8642 0.0295 -2.1620 14 6 4.2957 -0.4982 -2.0478 15 6 4.4928 -1.7214 -2.9244 16 1 4.1918 -1.4724 -3.9421 17 6 5.9795 -2.0831 -2.9311 18 6 3.7011 -2.9345 -2.4710 19 6 2.1984 -2.6926 -2.6328 20 6 1.6935 -1.9674 -1.4031 21 8 0.9911 -2.5496 -0.6040 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 0.7082 1.1607 3.4844 26 1 2.8486 1.0960 -1.9380 27 1 2.4915 -0.1401 -3.1722 28 1 4.9909 0.2815 -2.3589 29 1 4.4975 -0.7653 -1.0105 30 1 6.3053 -2.2995 -1.9136 31 1 6.1372 -2.9608 -3.5578 32 1 6.5552 -1.2464 -3.3267 33 1 3.9922 -3.7974 -3.0699 34 1 3.9214 -3.1354 -1.4226 35 1 2.0189 -2.0819 -3.5177 36 1 1.6829 -3.6474 -2.7361 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261062186.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:11 Heat of formation + Delta-G solvation = -50.173780 kcal Electronic energy + Delta-G solvation = -16691.280597 eV Core-core repulsion = 14174.847171 eV Total energy + Delta-G solvation = -2516.433427 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.63473 -36.58872 -34.83689 -32.69522 -31.00249 -29.88641 -27.49579 -25.06232 -24.09947 -23.31678 -21.20425 -19.86639 -17.83891 -16.59643 -16.22248 -15.14362 -14.48021 -14.38519 -14.09819 -13.69001 -13.04871 -13.00514 -12.63344 -12.32720 -11.93179 -11.68047 -11.58213 -11.45140 -11.08604 -10.93455 -10.71328 -10.57017 -10.44315 -10.34684 -10.17287 -10.08548 -9.89949 -9.12048 -8.50221 -8.16288 -7.47744 -5.93234 -3.95455 3.36001 3.42572 3.49611 3.70488 4.12484 4.54233 4.83315 4.96066 4.98880 5.22327 5.38839 5.56444 5.58355 5.73269 5.77316 5.82248 5.86770 5.89460 6.05679 6.14963 6.25174 6.30624 6.32451 6.48156 6.69883 6.86979 7.08818 7.25317 7.34618 7.83388 7.96741 8.18918 8.30966 8.73332 9.03174 9.35806 9.69007 11.12720 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029296 B = 0.009507 C = 0.008798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.521171 B = 2944.597980 C = 3181.635090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.269 3.731 3 H 0.040 0.960 4 C -0.494 4.494 5 H 0.056 0.944 6 C 0.058 3.942 7 N -0.898 5.898 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.595 5.595 13 C 0.113 3.887 14 C -0.135 4.135 15 C -0.090 4.090 16 H 0.064 0.936 17 C -0.148 4.148 18 C -0.105 4.105 19 C -0.142 4.142 20 C 0.507 3.493 21 O -0.534 6.534 22 H 0.002 0.998 23 H 0.052 0.948 24 H 0.088 0.912 25 H 0.260 0.740 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.052 -2.215 -12.046 14.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.169 3.831 3 H 0.058 0.942 4 C -0.533 4.533 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.327 5.327 13 C -0.011 4.011 14 C -0.174 4.174 15 C -0.108 4.108 16 H 0.082 0.918 17 C -0.205 4.205 18 C -0.143 4.143 19 C -0.182 4.182 20 C 0.293 3.707 21 O -0.412 6.412 22 H 0.021 0.979 23 H 0.071 0.929 24 H 0.107 0.893 25 H 0.070 0.930 26 H 0.097 0.903 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.596 -2.394 -11.462 13.439 hybrid contribution 0.393 -0.361 0.799 0.960 sum 6.989 -2.754 -10.663 13.043 Atomic orbital electron populations 1.22143 0.98154 1.01328 0.99736 1.18859 0.91446 0.91916 0.80850 0.94200 1.21256 1.30243 1.11779 0.89996 0.92549 1.24846 0.95339 0.95161 0.98844 1.69873 1.37332 1.23291 1.23362 0.86520 0.78252 0.80249 0.82560 1.20925 1.21270 1.19944 1.48252 1.49360 1.11079 1.23999 1.21636 0.89906 0.97059 0.92479 1.21883 0.97102 0.96800 1.01612 1.20765 0.95325 0.95241 0.99499 0.91762 1.21898 0.95863 1.00894 1.01844 1.21243 0.93139 0.97483 1.02468 1.22035 0.97143 1.01383 0.97674 1.20062 0.81137 0.82292 0.87229 1.90673 1.37853 1.65916 1.46711 0.97900 0.92863 0.89323 0.93049 0.90265 0.92166 0.91515 0.90369 0.92630 0.93036 0.92868 0.91643 0.91399 0.90419 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 8.89 37.16 0.33 -3.73 16 2 C 0.27 6.91 2.68 -69.08 -0.18 6.73 16 3 H 0.04 1.06 7.59 -51.93 -0.39 0.66 16 4 C -0.49 -14.13 7.56 -34.44 -0.26 -14.39 16 5 H 0.06 1.68 7.46 -52.48 -0.39 1.29 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.90 -26.20 11.32 55.43 0.63 -25.57 16 8 Si 0.90 22.53 29.54 -169.99 -5.02 17.51 16 9 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 11 H -0.27 -7.02 7.11 56.52 0.40 -6.62 16 12 N -0.59 -12.63 2.41 -166.97 -0.40 -13.03 16 13 C 0.11 1.80 5.91 -3.67 -0.02 1.78 16 14 C -0.14 -1.92 4.98 -27.36 -0.14 -2.06 16 15 C -0.09 -1.10 2.21 -91.86 -0.20 -1.30 16 16 H 0.06 0.69 7.87 -51.92 -0.41 0.28 16 17 C -0.15 -1.57 9.03 37.16 0.34 -1.23 16 18 C -0.11 -1.46 4.91 -27.32 -0.13 -1.60 16 19 C -0.14 -2.22 5.57 -27.49 -0.15 -2.38 16 20 C 0.51 10.95 6.07 -11.25 -0.07 10.88 16 21 O -0.53 -14.16 14.09 5.56 0.08 -14.08 16 22 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 23 H 0.05 1.48 6.12 -51.93 -0.32 1.16 16 24 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 25 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.08 1.23 7.62 -51.93 -0.40 0.83 16 27 H 0.06 0.81 6.71 -51.93 -0.35 0.46 16 28 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 29 H 0.08 1.36 8.05 -51.93 -0.42 0.94 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.49 8.09 -51.93 -0.42 0.07 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.76 8.06 -51.93 -0.42 0.34 16 34 H 0.07 1.12 7.86 -51.93 -0.41 0.71 16 35 H 0.08 1.04 6.77 -51.93 -0.35 0.69 16 36 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 279.00 15.07 4.20 4.20 Total: -1.00 -31.94 279.00 -6.94 -38.88 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -5.83 Total: -2.20 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -0.59 Total: -5.71 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.23 Total: -38.60 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: 0.08 Total: -14.08 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.94 -6.94 -38.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261062186.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.295 kcal (2) G-P(sol) polarization free energy of solvation -31.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds