Wall clock time and date at job start Mon Mar 30 2020 02:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47003 * 2 1 4 4 C 1.50701 * 109.47183 * 120.00411 * 2 1 3 5 5 H 1.08004 * 119.99911 * 120.00313 * 4 2 1 6 6 C 1.37875 * 119.99838 * 299.99735 * 4 2 1 7 7 N 1.31516 * 119.99994 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99839 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47271 * 90.00263 * 8 6 4 10 10 H 1.48503 * 109.47043 * 210.00324 * 8 6 4 11 11 H 1.48501 * 109.47517 * 330.00231 * 8 6 4 12 12 N 1.46506 * 109.47143 * 240.00504 * 2 1 3 13 13 C 1.47190 * 119.78483 * 119.99695 * 12 2 1 14 14 C 1.52996 * 108.66349 * 108.03213 * 13 12 2 15 15 C 1.51773 * 110.87707 * 86.45958 * 14 13 12 16 16 H 1.09010 * 108.61904 * 53.98288 * 15 14 13 17 17 C 1.53003 * 108.61534 * 171.87997 * 15 14 13 18 18 C 1.51787 * 113.81694 * 293.00147 * 15 14 13 19 19 C 1.53059 * 110.74655 * 66.81385 * 18 15 14 20 20 C 1.33369 * 119.78197 * 299.99802 * 12 2 1 21 21 O 1.21280 * 119.89730 * 0.32218 * 20 12 2 22 22 H 1.09001 * 109.47325 * 60.00016 * 1 2 3 23 23 H 1.09002 * 109.46983 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47331 * 299.99437 * 1 2 3 25 25 H 0.97000 * 119.99953 * 179.97438 * 7 6 4 26 26 H 1.08996 * 109.60818 * 348.27748 * 13 12 2 27 27 H 1.09001 * 109.60216 * 227.77901 * 13 12 2 28 28 H 1.08997 * 109.19086 * 206.81952 * 14 13 12 29 29 H 1.08991 * 109.19681 * 326.14734 * 14 13 12 30 30 H 1.09001 * 109.46768 * 60.00161 * 17 15 14 31 31 H 1.08999 * 109.47691 * 180.02562 * 17 15 14 32 32 H 1.09001 * 109.47331 * 300.00561 * 17 15 14 33 33 H 1.08998 * 109.22694 * 187.13989 * 18 15 14 34 34 H 1.08998 * 109.21977 * 306.49144 * 18 15 14 35 35 H 1.09005 * 109.63514 * 34.78236 * 19 18 15 36 36 H 1.08998 * 109.63372 * 155.17999 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3225 -1.1197 4.0078 9 1 3.6305 -0.5442 4.4118 10 1 1.3445 -0.9493 5.1122 11 1 2.4881 -2.5656 3.7121 12 7 2.0183 -0.6905 -1.1963 13 6 2.8642 0.0295 -2.1620 14 6 4.2957 -0.4982 -2.0478 15 6 4.4928 -1.7214 -2.9244 16 1 4.1918 -1.4724 -3.9421 17 6 5.9795 -2.0831 -2.9311 18 6 3.7011 -2.9345 -2.4710 19 6 2.1984 -2.6926 -2.6328 20 6 1.6935 -1.9674 -1.4031 21 8 0.9911 -2.5496 -0.6040 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 0.7082 1.1607 3.4844 26 1 2.8486 1.0960 -1.9380 27 1 2.4915 -0.1401 -3.1722 28 1 4.9909 0.2815 -2.3589 29 1 4.4975 -0.7653 -1.0105 30 1 6.3053 -2.2995 -1.9136 31 1 6.1372 -2.9608 -3.5578 32 1 6.5552 -1.2464 -3.3267 33 1 3.9922 -3.7974 -3.0699 34 1 3.9214 -3.1354 -1.4226 35 1 2.0189 -2.0819 -3.5177 36 1 1.6829 -3.6474 -2.7361 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261062186.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:11 Heat of formation + Delta-G solvation = -70.142387 kcal Electronic energy + Delta-G solvation = -16692.146501 eV Core-core repulsion = 14174.847171 eV Total energy + Delta-G solvation = -2517.299330 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.18961 -37.93618 -36.65769 -34.61098 -32.29079 -31.66172 -28.91657 -27.27775 -25.40520 -24.57920 -23.04986 -20.93449 -19.53446 -18.50249 -17.81382 -17.09279 -16.17671 -15.84362 -15.22912 -15.15234 -14.70859 -14.44625 -14.23303 -13.77691 -13.44660 -13.21218 -13.05327 -12.95399 -12.81357 -12.61694 -12.47642 -12.30780 -12.20290 -11.98119 -11.57295 -11.33022 -11.31061 -11.13078 -10.59028 -10.07915 -9.25003 -8.13213 -6.22243 1.32562 1.35836 1.46244 2.05931 2.37579 2.58283 3.13811 3.70889 3.87086 3.96181 4.00236 4.39037 4.50239 4.60006 4.62231 4.71571 4.80504 4.85643 4.93773 4.96556 5.00753 5.05549 5.15012 5.19839 5.28153 5.33576 5.39142 5.44733 5.62115 5.63687 5.86910 6.11972 6.22538 6.77279 7.03914 7.39792 7.72817 8.90719 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029296 B = 0.009507 C = 0.008798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.521171 B = 2944.597980 C = 3181.635090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.271 3.729 3 H 0.030 0.970 4 C -0.507 4.507 5 H 0.033 0.967 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.951 3.049 9 H -0.267 1.267 10 H -0.278 1.278 11 H -0.286 1.286 12 N -0.598 5.598 13 C 0.105 3.895 14 C -0.130 4.130 15 C -0.088 4.088 16 H 0.097 0.903 17 C -0.144 4.144 18 C -0.102 4.102 19 C -0.128 4.128 20 C 0.492 3.508 21 O -0.598 6.598 22 H 0.026 0.974 23 H 0.029 0.971 24 H 0.064 0.936 25 H 0.263 0.737 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.035 0.965 30 H 0.036 0.964 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.029 0.971 35 H 0.113 0.887 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.489 -2.215 -14.339 16.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.169 3.831 3 H 0.048 0.952 4 C -0.546 4.546 5 H 0.051 0.949 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.778 3.222 9 H -0.192 1.192 10 H -0.204 1.204 11 H -0.211 1.211 12 N -0.329 5.329 13 C -0.017 4.017 14 C -0.168 4.168 15 C -0.106 4.106 16 H 0.115 0.885 17 C -0.202 4.202 18 C -0.140 4.140 19 C -0.168 4.168 20 C 0.281 3.719 21 O -0.479 6.479 22 H 0.045 0.955 23 H 0.048 0.952 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.099 0.901 27 H 0.116 0.884 28 H 0.113 0.887 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.048 0.952 35 H 0.131 0.869 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.069 -2.366 -13.791 16.152 hybrid contribution -0.055 -0.340 1.488 1.528 sum 8.014 -2.706 -12.303 14.930 Atomic orbital electron populations 1.21936 0.98704 0.99663 0.99677 1.18533 0.91005 0.91415 0.82114 0.95197 1.21385 1.30232 1.11156 0.91811 0.94913 1.25547 0.95655 0.95945 1.01409 1.69958 1.37786 1.24024 1.24045 0.85661 0.78586 0.78443 0.79550 1.19230 1.20368 1.21142 1.48261 1.49662 1.11453 1.23513 1.22026 0.90168 0.96737 0.92801 1.21833 0.96430 0.98778 0.99795 1.20774 0.96197 0.93310 1.00297 0.88490 1.21865 0.94715 1.02326 1.01259 1.21280 0.92020 0.99803 1.00887 1.22009 0.98055 1.01292 0.95430 1.21204 0.80026 0.82170 0.88496 1.90634 1.40711 1.67227 1.49368 0.95519 0.95151 0.91685 0.92798 0.90128 0.88392 0.88745 0.94580 0.94480 0.91288 0.91311 0.88388 0.95162 0.86853 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.58 8.89 71.98 0.64 -6.94 16 2 C 0.27 14.29 2.68 44.24 0.12 14.41 16 3 H 0.03 1.63 7.59 -2.39 -0.02 1.61 16 4 C -0.51 -30.08 7.56 25.60 0.19 -29.89 16 5 H 0.03 2.05 7.46 -2.91 -0.02 2.03 16 6 C 0.01 0.74 5.30 84.65 0.45 1.19 16 7 N -0.92 -54.56 11.32 21.45 0.24 -54.31 16 8 Si 0.95 47.22 29.54 68.60 2.03 49.24 16 9 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 10 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 11 H -0.29 -14.59 7.11 99.48 0.71 -13.89 16 12 N -0.60 -25.39 2.41 -801.34 -1.93 -27.31 16 13 C 0.10 3.10 5.91 86.25 0.51 3.61 16 14 C -0.13 -3.41 4.98 30.19 0.15 -3.26 16 15 C -0.09 -1.81 2.21 -11.59 -0.03 -1.84 16 16 H 0.10 1.48 7.87 -2.38 -0.02 1.46 16 17 C -0.14 -2.56 9.03 71.98 0.65 -1.91 16 18 C -0.10 -2.57 4.91 30.22 0.15 -2.42 16 19 C -0.13 -3.70 5.57 30.10 0.17 -3.53 16 20 C 0.49 21.35 6.07 88.11 0.53 21.89 16 21 O -0.60 -32.88 14.09 -3.03 -0.04 -32.92 16 22 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.03 1.73 6.12 -2.39 -0.01 1.71 16 24 H 0.06 3.77 6.07 -2.39 -0.01 3.75 16 25 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 26 H 0.08 2.35 7.62 -2.39 -0.02 2.33 16 27 H 0.10 2.19 6.71 -2.39 -0.02 2.17 16 28 H 0.09 1.96 8.10 -2.39 -0.02 1.94 16 29 H 0.04 1.25 8.05 -2.39 -0.02 1.23 16 30 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 1.00 8.09 -2.39 -0.02 0.98 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.10 1.87 8.06 -2.39 -0.02 1.85 16 34 H 0.03 0.98 7.86 -2.39 -0.02 0.97 16 35 H 0.11 2.48 6.77 -2.38 -0.02 2.46 16 36 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -73.15 279.00 4.87 -68.28 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: 1.04 Total: 5.72 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 3.54 Total: -8.69 kcal Atomic # 7 Polarization: -79.94 SS G_CDS: -1.69 Total: -81.63 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -0.04 Total: -32.92 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.24 kcal Total: -73.15 4.87 -68.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261062186.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.863 kcal (2) G-P(sol) polarization free energy of solvation -73.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds