Wall clock time and date at job start Mon Mar 30 2020 03:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21279 * 119.99848 * 2 1 4 4 N 1.34777 * 119.99701 * 179.97438 * 2 1 3 5 5 C 1.46499 * 120.00591 * 355.62933 * 4 2 1 6 6 C 1.46500 * 119.99625 * 175.62275 * 4 2 1 7 7 C 1.52997 * 109.46972 * 90.00331 * 6 4 2 8 8 H 1.09002 * 110.43401 * 52.45852 * 7 6 4 9 9 C 1.54259 * 110.60237 * 289.84149 * 7 6 4 10 10 C 1.53879 * 106.60193 * 217.65514 * 9 7 6 11 11 C 1.54265 * 106.59695 * 359.97438 * 10 9 7 12 12 H 1.08999 * 110.59659 * 264.87434 * 11 10 9 13 13 C 1.50696 * 110.48692 * 142.28684 * 11 10 9 14 14 H 1.08001 * 120.00141 * 245.22830 * 13 11 10 15 15 C 1.37882 * 119.99822 * 65.22334 * 13 11 10 16 16 N 1.31513 * 120.00227 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99897 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47267 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46937 * 120.00197 * 17 15 13 20 20 H 1.48500 * 109.47263 * 240.00261 * 17 15 13 21 21 C 1.54886 * 104.19525 * 23.61072 * 11 10 9 22 22 H 1.09000 * 109.46822 * 185.30120 * 1 2 3 23 23 H 1.08993 * 109.47418 * 305.30625 * 1 2 3 24 24 H 1.09002 * 109.46646 * 65.30811 * 1 2 3 25 25 H 1.08998 * 109.46768 * 275.44894 * 5 4 2 26 26 H 1.09005 * 109.46624 * 35.44956 * 5 4 2 27 27 H 1.08995 * 109.47375 * 155.44203 * 5 4 2 28 28 H 1.09000 * 109.47655 * 330.00627 * 6 4 2 29 29 H 1.09000 * 109.47747 * 210.00244 * 6 4 2 30 30 H 1.09008 * 110.03334 * 336.94069 * 9 7 6 31 31 H 1.09007 * 110.03467 * 98.37115 * 9 7 6 32 32 H 1.08998 * 110.03118 * 240.71353 * 10 9 7 33 33 H 1.09001 * 110.03292 * 119.28382 * 10 9 7 34 34 H 0.97006 * 119.99378 * 359.97438 * 16 15 13 35 35 H 1.09001 * 110.75972 * 80.37265 * 21 11 10 36 36 H 1.09004 * 110.75823 * 203.55700 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4517 -2.4341 0.0978 6 6 3.6427 -1.1691 -0.0963 7 6 4.2469 -1.1142 1.3082 8 1 3.8264 -1.9010 1.9344 9 6 4.0092 0.2694 1.9476 10 6 5.2798 0.6086 2.7467 11 6 6.2449 -0.5811 2.5656 12 1 6.1491 -1.2823 3.3946 13 6 7.6664 -0.0943 2.4498 14 1 8.2113 -0.2329 1.5278 15 6 8.2712 0.5283 3.5212 16 7 7.6078 0.6967 4.6442 17 14 10.0335 1.1312 3.3780 18 1 10.5536 0.8225 2.0218 19 1 10.0742 2.5987 3.6010 20 1 10.8733 0.4521 4.3972 21 6 5.7888 -1.2420 1.2411 22 1 -0.3633 -1.0233 0.0949 23 1 -0.3634 0.5939 0.8386 24 1 -0.3633 0.4293 -0.9337 25 1 1.2540 -2.6599 1.1456 26 1 0.5075 -2.3520 -0.4407 27 1 2.0509 -3.2328 -0.3394 28 1 3.9702 -0.3001 -0.6669 29 1 3.9725 -2.0787 -0.5983 30 1 3.8461 1.0167 1.1709 31 1 3.1481 0.2296 2.6148 32 1 5.0352 0.7333 3.8016 33 1 5.7332 1.5203 2.3578 34 1 6.6928 0.3833 4.7186 35 1 6.1840 -0.6992 0.3824 36 1 6.0916 -2.2886 1.2073 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261065451.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:37 Heat of formation + Delta-G solvation = -55.974895 kcal Electronic energy + Delta-G solvation = -16050.164836 eV Core-core repulsion = 13533.479854 eV Total energy + Delta-G solvation = -2516.684982 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.86750 -37.34024 -35.36717 -32.80499 -30.58588 -28.53267 -27.93796 -26.71353 -24.36417 -23.23637 -19.50975 -19.38933 -18.74863 -16.99924 -16.64528 -15.88824 -15.52247 -14.85642 -13.69265 -13.62754 -13.33788 -13.25222 -13.05693 -12.88756 -12.40083 -12.17105 -12.01879 -11.58922 -11.42220 -10.84180 -10.60443 -10.24374 -10.09833 -10.00510 -9.86599 -9.75969 -9.53103 -9.07389 -8.50786 -8.28277 -8.22101 -6.22632 -3.93084 2.71125 3.10770 3.49367 3.53654 3.66756 4.60327 4.62091 4.93238 4.99902 5.22666 5.29458 5.29781 5.46431 5.50691 5.55662 5.63190 5.71709 5.85184 6.02646 6.18820 6.39731 6.57992 6.64470 6.74871 6.85361 6.87226 6.96988 7.23417 7.37110 7.45705 7.52622 7.83174 8.29501 8.39835 8.57022 9.01769 9.79204 11.16194 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.053983 B = 0.006036 C = 0.005832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.559656 B = 4638.065871 C = 4800.108485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.506 3.494 3 O -0.534 6.534 4 N -0.617 5.617 5 C 0.078 3.922 6 C 0.123 3.877 7 C -0.108 4.108 8 H 0.060 0.940 9 C -0.117 4.117 10 C -0.113 4.113 11 C 0.033 3.967 12 H 0.017 0.983 13 C -0.591 4.591 14 H 0.048 0.952 15 C 0.017 3.983 16 N -0.917 5.917 17 Si 1.071 2.929 18 H -0.290 1.290 19 H -0.288 1.288 20 H -0.288 1.288 21 C -0.100 4.100 22 H 0.078 0.922 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.040 0.960 33 H 0.054 0.946 34 H 0.272 0.728 35 H 0.058 0.942 36 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.955 -6.532 -9.478 18.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.294 3.706 3 O -0.411 6.411 4 N -0.352 5.352 5 C -0.066 4.066 6 C 0.001 3.999 7 C -0.127 4.127 8 H 0.079 0.921 9 C -0.155 4.155 10 C -0.151 4.151 11 C 0.015 3.985 12 H 0.035 0.965 13 C -0.630 4.630 14 H 0.066 0.934 15 C -0.187 4.187 16 N -0.554 5.554 17 Si 0.900 3.100 18 H -0.216 1.216 19 H -0.215 1.215 20 H -0.215 1.215 21 C -0.138 4.138 22 H 0.097 0.903 23 H 0.110 0.890 24 H 0.109 0.891 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.423 -5.211 -8.655 16.012 hybrid contribution -1.340 -0.933 -0.699 1.776 sum -13.763 -6.144 -9.354 17.739 Atomic orbital electron populations 1.21986 0.92469 1.04263 1.04943 1.20733 0.90364 0.83459 0.76050 1.90715 1.70277 1.31079 1.48988 1.47981 1.07620 1.06154 1.73399 1.21824 0.97116 0.85860 1.01752 1.21712 0.77734 1.02407 0.98051 1.22397 0.97311 0.98363 0.94638 0.92112 1.22341 0.97621 0.96192 0.99308 1.22354 0.94317 1.00879 0.97544 1.19585 0.94717 0.92379 0.91849 0.96453 1.22059 0.97784 1.41893 1.01226 0.93358 1.25766 1.05318 0.94893 0.92714 1.70713 1.13206 1.44711 1.26761 0.83519 0.74840 0.76542 0.75058 1.21623 1.21471 1.21499 1.22445 0.91521 0.99144 1.00703 0.90313 0.89001 0.89107 0.92644 0.91148 0.90901 0.90021 0.91102 0.90664 0.94706 0.94145 0.92697 0.91632 0.92323 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 10.00 36.01 0.36 -1.26 16 2 C 0.51 7.20 7.37 -10.98 -0.08 7.12 16 3 O -0.53 -10.11 14.04 5.56 0.08 -10.03 16 4 N -0.62 -8.02 2.85 -181.57 -0.52 -8.54 16 5 C 0.08 0.66 10.00 59.85 0.60 1.26 16 6 C 0.12 1.87 4.99 -4.04 -0.02 1.85 16 7 C -0.11 -1.98 3.08 -88.98 -0.27 -2.26 16 8 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 9 C -0.12 -2.49 5.37 -25.61 -0.14 -2.62 16 10 C -0.11 -2.83 5.47 -25.61 -0.14 -2.97 16 11 C 0.03 0.87 2.38 -90.12 -0.21 0.65 16 12 H 0.02 0.48 7.93 -51.93 -0.41 0.07 16 13 C -0.59 -17.16 8.36 -34.44 -0.29 -17.45 16 14 H 0.05 1.39 7.77 -52.49 -0.41 0.99 16 15 C 0.02 0.50 5.35 -17.82 -0.10 0.40 16 16 N -0.92 -28.57 13.47 55.43 0.75 -27.82 16 17 Si 1.07 26.14 29.90 -169.99 -5.08 21.06 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 C -0.10 -2.13 5.71 -24.75 -0.14 -2.27 16 22 H 0.08 0.51 5.50 -51.93 -0.29 0.23 16 23 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.42 6.15 -51.93 -0.32 0.10 16 27 H 0.07 0.54 7.83 -51.93 -0.41 0.13 16 28 H 0.08 1.40 7.31 -51.93 -0.38 1.02 16 29 H 0.07 0.91 7.86 -51.93 -0.41 0.50 16 30 H 0.07 1.68 5.52 -51.92 -0.29 1.39 16 31 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.04 1.04 7.01 -51.93 -0.36 0.68 16 33 H 0.05 1.49 7.83 -51.93 -0.41 1.08 16 34 H 0.27 8.43 5.65 -40.82 -0.23 8.20 16 35 H 0.06 1.27 7.96 -51.93 -0.41 0.86 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 282.84 15.07 4.26 4.26 Total: -1.00 -33.92 282.84 -6.60 -40.52 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -5.65 Total: -1.90 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -0.43 Total: -17.55 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.23 Total: -36.36 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.08 Total: -10.03 kcal Atomic # 14 Polarization: 26.14 SS G_CDS: -5.08 Total: 21.06 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -33.92 -6.60 -40.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261065451.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.452 kcal (2) G-P(sol) polarization free energy of solvation -33.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds