Wall clock time and date at job start Mon Mar 30 2020 03:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21279 * 119.99848 * 2 1 4 4 N 1.34777 * 119.99701 * 179.97438 * 2 1 3 5 5 C 1.46499 * 120.00591 * 355.62933 * 4 2 1 6 6 C 1.46500 * 119.99625 * 175.62275 * 4 2 1 7 7 C 1.52997 * 109.46972 * 90.00331 * 6 4 2 8 8 H 1.09002 * 110.43401 * 52.45852 * 7 6 4 9 9 C 1.54259 * 110.60237 * 289.84149 * 7 6 4 10 10 C 1.53879 * 106.60193 * 217.65514 * 9 7 6 11 11 C 1.54265 * 106.59695 * 359.97438 * 10 9 7 12 12 H 1.08999 * 110.59659 * 264.87434 * 11 10 9 13 13 C 1.50696 * 110.48692 * 142.28684 * 11 10 9 14 14 H 1.08001 * 120.00141 * 245.22830 * 13 11 10 15 15 C 1.37882 * 119.99822 * 65.22334 * 13 11 10 16 16 N 1.31513 * 120.00227 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99897 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47267 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46937 * 120.00197 * 17 15 13 20 20 H 1.48500 * 109.47263 * 240.00261 * 17 15 13 21 21 C 1.54886 * 104.19525 * 23.61072 * 11 10 9 22 22 H 1.09000 * 109.46822 * 185.30120 * 1 2 3 23 23 H 1.08993 * 109.47418 * 305.30625 * 1 2 3 24 24 H 1.09002 * 109.46646 * 65.30811 * 1 2 3 25 25 H 1.08998 * 109.46768 * 275.44894 * 5 4 2 26 26 H 1.09005 * 109.46624 * 35.44956 * 5 4 2 27 27 H 1.08995 * 109.47375 * 155.44203 * 5 4 2 28 28 H 1.09000 * 109.47655 * 330.00627 * 6 4 2 29 29 H 1.09000 * 109.47747 * 210.00244 * 6 4 2 30 30 H 1.09008 * 110.03334 * 336.94069 * 9 7 6 31 31 H 1.09007 * 110.03467 * 98.37115 * 9 7 6 32 32 H 1.08998 * 110.03118 * 240.71353 * 10 9 7 33 33 H 1.09001 * 110.03292 * 119.28382 * 10 9 7 34 34 H 0.97006 * 119.99378 * 359.97438 * 16 15 13 35 35 H 1.09001 * 110.75972 * 80.37265 * 21 11 10 36 36 H 1.09004 * 110.75823 * 203.55700 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4517 -2.4341 0.0978 6 6 3.6427 -1.1691 -0.0963 7 6 4.2469 -1.1142 1.3082 8 1 3.8264 -1.9010 1.9344 9 6 4.0092 0.2694 1.9476 10 6 5.2798 0.6086 2.7467 11 6 6.2449 -0.5811 2.5656 12 1 6.1491 -1.2823 3.3946 13 6 7.6664 -0.0943 2.4498 14 1 8.2113 -0.2329 1.5278 15 6 8.2712 0.5283 3.5212 16 7 7.6078 0.6967 4.6442 17 14 10.0335 1.1312 3.3780 18 1 10.5536 0.8225 2.0218 19 1 10.0742 2.5987 3.6010 20 1 10.8733 0.4521 4.3972 21 6 5.7888 -1.2420 1.2411 22 1 -0.3633 -1.0233 0.0949 23 1 -0.3634 0.5939 0.8386 24 1 -0.3633 0.4293 -0.9337 25 1 1.2540 -2.6599 1.1456 26 1 0.5075 -2.3520 -0.4407 27 1 2.0509 -3.2328 -0.3394 28 1 3.9702 -0.3001 -0.6669 29 1 3.9725 -2.0787 -0.5983 30 1 3.8461 1.0167 1.1709 31 1 3.1481 0.2296 2.6148 32 1 5.0352 0.7333 3.8016 33 1 5.7332 1.5203 2.3578 34 1 6.6928 0.3833 4.7186 35 1 6.1840 -0.6992 0.3824 36 1 6.0916 -2.2886 1.2073 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261065451.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:37 Heat of formation + Delta-G solvation = -77.717309 kcal Electronic energy + Delta-G solvation = -16051.107658 eV Core-core repulsion = 13533.479854 eV Total energy + Delta-G solvation = -2517.627804 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.01913 -39.06792 -36.58167 -34.81025 -31.87283 -29.87301 -29.76507 -27.69777 -26.10364 -25.03014 -21.35980 -20.91198 -20.09216 -18.79562 -18.03084 -16.93159 -16.72883 -16.55708 -15.68374 -15.20826 -14.77499 -14.44359 -14.22502 -14.04322 -13.71184 -13.56014 -13.26335 -12.92571 -12.78238 -12.54895 -12.51537 -11.96741 -11.87367 -11.71366 -11.69296 -11.44516 -11.31911 -10.68934 -10.53248 -10.43239 -9.57151 -8.59501 -6.30978 1.50454 1.60454 1.66434 1.76357 2.15126 2.57375 3.20509 3.67729 3.86928 3.92198 3.94635 4.32447 4.35604 4.45016 4.48304 4.55289 4.63676 4.71106 4.76691 4.86829 4.88920 4.96895 4.98476 5.00963 5.11385 5.16666 5.24233 5.44666 5.51353 5.64420 5.71577 6.13503 6.25259 6.48552 6.67426 7.25569 7.50340 8.79438 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.053983 B = 0.006036 C = 0.005832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.559656 B = 4638.065871 C = 4800.108485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.492 3.508 3 O -0.593 6.593 4 N -0.617 5.617 5 C 0.069 3.931 6 C 0.129 3.871 7 C -0.093 4.093 8 H 0.075 0.925 9 C -0.104 4.104 10 C -0.104 4.104 11 C 0.021 3.979 12 H -0.006 1.006 13 C -0.606 4.606 14 H 0.046 0.954 15 C -0.036 4.036 16 N -0.942 5.942 17 Si 1.118 2.882 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.277 1.277 21 C -0.091 4.091 22 H 0.111 0.889 23 H 0.092 0.908 24 H 0.105 0.895 25 H 0.060 0.940 26 H 0.101 0.899 27 H 0.088 0.912 28 H 0.057 0.943 29 H 0.105 0.895 30 H 0.064 0.936 31 H 0.039 0.961 32 H 0.020 0.980 33 H 0.022 0.978 34 H 0.259 0.741 35 H 0.052 0.948 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.073 -8.282 -10.921 20.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.283 3.717 3 O -0.474 6.474 4 N -0.349 5.349 5 C -0.072 4.072 6 C 0.006 3.994 7 C -0.113 4.113 8 H 0.093 0.907 9 C -0.142 4.142 10 C -0.143 4.143 11 C 0.002 3.998 12 H 0.012 0.988 13 C -0.644 4.644 14 H 0.065 0.935 15 C -0.234 4.234 16 N -0.580 5.580 17 Si 0.940 3.060 18 H -0.195 1.195 19 H -0.210 1.210 20 H -0.203 1.203 21 C -0.129 4.129 22 H 0.130 0.870 23 H 0.110 0.890 24 H 0.123 0.877 25 H 0.079 0.921 26 H 0.119 0.881 27 H 0.107 0.893 28 H 0.076 0.924 29 H 0.123 0.877 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.039 0.961 33 H 0.041 0.959 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.583 -7.017 -10.112 18.330 hybrid contribution -1.025 -0.417 -0.234 1.131 sum -14.608 -7.433 -10.346 19.383 Atomic orbital electron populations 1.22001 0.88343 1.06603 1.05706 1.21726 0.92440 0.82857 0.74706 1.90690 1.71791 1.33231 1.51729 1.48113 1.06747 1.07713 1.72369 1.22161 0.98314 0.83904 1.02853 1.21482 0.79515 1.03033 0.95362 1.22282 0.95498 0.96497 0.96977 0.90681 1.22190 0.95410 0.98028 0.98528 1.22185 0.96065 0.99288 0.96754 1.19633 0.93907 0.92485 0.93773 0.98752 1.22463 0.99307 1.41530 1.01073 0.93550 1.27281 1.09104 0.94754 0.92248 1.70839 1.12925 1.46345 1.27930 0.82925 0.70382 0.76331 0.76322 1.19524 1.20950 1.20285 1.22311 0.93595 0.99553 0.97450 0.87001 0.88961 0.87690 0.92105 0.88052 0.89299 0.92418 0.87708 0.91728 0.94240 0.96135 0.95867 0.92996 0.92894 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 10.00 71.24 0.71 -1.84 16 2 C 0.49 13.19 7.37 87.66 0.65 13.84 16 3 O -0.59 -22.62 14.04 -3.03 -0.04 -22.66 16 4 N -0.62 -14.29 2.85 -846.76 -2.41 -16.71 16 5 C 0.07 0.85 10.00 127.77 1.28 2.13 16 6 C 0.13 3.65 4.99 86.38 0.43 4.08 16 7 C -0.09 -3.31 3.08 -9.73 -0.03 -3.34 16 8 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 9 C -0.10 -4.48 5.37 31.32 0.17 -4.32 16 10 C -0.10 -5.48 5.47 31.32 0.17 -5.31 16 11 C 0.02 1.10 2.38 -10.47 -0.02 1.07 16 12 H -0.01 -0.33 7.93 -2.39 -0.02 -0.34 16 13 C -0.61 -35.84 8.36 25.60 0.21 -35.62 16 14 H 0.05 2.70 7.77 -2.91 -0.02 2.67 16 15 C -0.04 -2.18 5.35 84.66 0.45 -1.73 16 16 N -0.94 -60.42 13.47 21.45 0.29 -60.13 16 17 Si 1.12 52.76 29.90 68.60 2.05 54.81 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 C -0.09 -3.81 5.71 31.88 0.18 -3.63 16 22 H 0.11 0.92 5.50 -2.39 -0.01 0.90 16 23 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.10 0.65 6.15 -2.38 -0.01 0.64 16 27 H 0.09 0.86 7.83 -2.39 -0.02 0.85 16 28 H 0.06 1.94 7.31 -2.39 -0.02 1.92 16 29 H 0.10 2.28 7.86 -2.39 -0.02 2.26 16 30 H 0.06 2.97 5.52 -2.38 -0.01 2.96 16 31 H 0.04 1.63 8.14 -2.38 -0.02 1.62 16 32 H 0.02 1.10 7.01 -2.39 -0.02 1.09 16 33 H 0.02 1.31 7.83 -2.39 -0.02 1.29 16 34 H 0.26 16.82 5.65 -92.70 -0.52 16.29 16 35 H 0.05 2.27 7.96 -2.39 -0.02 2.25 16 36 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 Total: -1.00 -77.20 282.84 5.38 -71.82 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: 1.29 Total: 7.52 kcal Atomic # 6 Polarization: -38.86 SS G_CDS: 4.20 Total: -34.66 kcal Atomic # 7 Polarization: -74.71 SS G_CDS: -2.12 Total: -76.83 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.04 Total: -22.66 kcal Atomic # 14 Polarization: 52.76 SS G_CDS: 2.05 Total: 54.81 kcal Total: -77.20 5.38 -71.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261065451.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.894 kcal (2) G-P(sol) polarization free energy of solvation -77.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds