Wall clock time and date at job start Mon Mar 30 2020 03:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21290 * 119.99357 * 2 1 4 4 N 1.34776 * 120.00522 * 179.97438 * 2 1 3 5 5 C 1.46497 * 119.99556 * 5.28501 * 4 2 1 6 6 C 1.46500 * 120.00123 * 185.28663 * 4 2 1 7 7 C 1.53000 * 109.46783 * 270.00247 * 6 4 2 8 8 H 1.08994 * 110.43729 * 52.45657 * 7 6 4 9 9 C 1.54891 * 110.48699 * 289.77116 * 7 6 4 10 10 C 1.54880 * 102.75182 * 203.38221 * 9 7 6 11 11 C 1.54265 * 104.19634 * 37.94349 * 10 9 7 12 12 H 1.09000 * 110.02933 * 95.72276 * 11 10 9 13 13 C 1.50704 * 110.03458 * 217.10631 * 11 10 9 14 14 H 1.08000 * 120.00192 * 118.54349 * 13 11 10 15 15 C 1.37876 * 119.99656 * 298.54477 * 13 11 10 16 16 N 1.31515 * 120.00320 * 0.02562 * 15 13 11 17 17 Si 1.86809 * 119.99615 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.46842 * 60.00406 * 17 15 13 19 19 H 1.48501 * 109.46887 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47242 * 300.00161 * 17 15 13 21 21 C 1.53871 * 106.59636 * 336.39185 * 11 10 9 22 22 H 1.08996 * 109.47268 * 264.66021 * 1 2 3 23 23 H 1.08996 * 109.47603 * 24.66661 * 1 2 3 24 24 H 1.09004 * 109.46896 * 144.66346 * 1 2 3 25 25 H 1.08996 * 109.47476 * 274.55989 * 5 4 2 26 26 H 1.09003 * 109.47405 * 34.56651 * 5 4 2 27 27 H 1.09002 * 109.46924 * 154.55881 * 5 4 2 28 28 H 1.08994 * 109.46926 * 150.00189 * 6 4 2 29 29 H 1.09000 * 109.46990 * 29.99606 * 6 4 2 30 30 H 1.09006 * 110.75153 * 85.06711 * 9 7 6 31 31 H 1.08996 * 110.75825 * 321.70198 * 9 7 6 32 32 H 1.09002 * 110.48788 * 279.26898 * 10 9 7 33 33 H 1.08995 * 110.49128 * 156.62279 * 10 9 7 34 34 H 0.97003 * 119.99749 * 180.02562 * 16 15 13 35 35 H 1.08999 * 110.03352 * 119.28515 * 21 11 10 36 36 H 1.09010 * 110.03312 * 240.71104 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0505 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 1.4532 -2.4332 -0.1158 6 6 3.6413 -1.1697 0.1174 7 6 4.2647 -1.1047 -1.2783 8 1 3.8499 -0.2690 -1.8419 9 6 4.0400 -2.4374 -2.0350 10 6 5.1842 -2.4350 -3.0788 11 6 6.3838 -1.8260 -2.3238 12 1 7.0122 -2.6196 -1.9194 13 6 7.1886 -0.9529 -3.2517 14 1 7.2993 0.1006 -3.0415 15 6 7.7835 -1.4991 -4.3692 16 7 7.6482 -2.7819 -4.6256 17 14 8.7805 -0.4166 -5.5198 18 1 9.9107 0.1910 -4.7725 19 1 9.3103 -1.2385 -6.6375 20 1 7.9125 0.6581 -6.0646 21 6 5.7991 -0.9803 -1.1790 22 1 -0.3633 -0.0956 1.0232 23 1 -0.3634 0.9338 -0.4289 24 1 -0.3633 -0.8384 -0.5944 25 1 1.1204 -2.7530 0.8716 26 1 0.5878 -2.2967 -0.7644 27 1 2.1099 -3.1920 -0.5413 28 1 3.9641 -2.0828 0.6174 29 1 3.9608 -0.3047 0.6986 30 1 3.0676 -2.4425 -2.5277 31 1 4.1359 -3.2866 -1.3586 32 1 4.9181 -1.8153 -3.9352 33 1 5.4112 -3.4520 -3.3985 34 1 8.0672 -3.1662 -5.4116 35 1 6.1434 -1.3633 -0.2183 36 1 6.0975 0.0618 -1.2946 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261065456.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:42 Heat of formation + Delta-G solvation = -55.839068 kcal Electronic energy + Delta-G solvation = -15943.591594 eV Core-core repulsion = 13426.912502 eV Total energy + Delta-G solvation = -2516.679092 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.75942 -37.36771 -35.18844 -32.56148 -30.63076 -28.62620 -28.09363 -26.64377 -24.64032 -23.05745 -19.73590 -18.90118 -18.74353 -16.74448 -16.46935 -15.96113 -15.60903 -14.49466 -14.01656 -13.81751 -13.23925 -13.09655 -12.77833 -12.67980 -12.35969 -12.21958 -12.05409 -11.56466 -11.35604 -10.95259 -10.66892 -10.51273 -10.08577 -10.00062 -9.66932 -9.62931 -9.48633 -9.15852 -8.65305 -8.41364 -8.29411 -5.93991 -3.95693 2.73603 3.17051 3.36792 3.40623 3.44357 4.50376 4.65651 4.99208 5.15407 5.23382 5.32811 5.36270 5.41052 5.57133 5.62787 5.72377 5.80201 5.90813 6.10731 6.26121 6.41896 6.48763 6.66985 6.84907 6.93998 6.96687 7.14360 7.34828 7.47026 7.51351 7.81338 7.96296 8.09635 8.29523 8.55360 9.07235 9.67616 11.15536 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.045673 B = 0.006120 C = 0.005810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.901060 B = 4574.057247 C = 4817.878358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.505 3.495 3 O -0.546 6.546 4 N -0.613 5.613 5 C 0.075 3.925 6 C 0.122 3.878 7 C -0.102 4.102 8 H 0.069 0.931 9 C -0.122 4.122 10 C -0.090 4.090 11 C 0.044 3.956 12 H 0.025 0.975 13 C -0.511 4.511 14 H 0.054 0.946 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.888 3.112 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.107 4.107 22 H 0.089 0.911 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.043 0.957 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.259 0.741 35 H 0.039 0.961 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.677 -1.277 8.746 16.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.294 3.706 3 O -0.423 6.423 4 N -0.346 5.346 5 C -0.068 4.068 6 C 0.000 4.000 7 C -0.122 4.122 8 H 0.088 0.912 9 C -0.159 4.159 10 C -0.129 4.129 11 C 0.026 3.974 12 H 0.043 0.957 13 C -0.549 4.549 14 H 0.072 0.928 15 C -0.141 4.141 16 N -0.531 5.531 17 Si 0.716 3.284 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.145 4.145 22 H 0.108 0.892 23 H 0.107 0.893 24 H 0.100 0.900 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.297 -0.867 8.619 15.870 hybrid contribution 0.523 0.384 -0.792 1.023 sum -12.775 -0.483 7.828 14.990 Atomic orbital electron populations 1.21964 0.92394 1.04815 1.04198 1.20762 0.90447 0.83385 0.76048 1.90727 1.70764 1.31125 1.49702 1.47950 1.07818 1.06185 1.72689 1.21891 0.97507 0.86231 1.01167 1.21702 0.77769 1.02228 0.98289 1.22333 0.97104 0.98485 0.94262 0.91244 1.22688 0.98903 0.95680 0.98663 1.22246 0.93711 1.00594 0.96304 1.19232 0.92895 0.93988 0.91282 0.95707 1.21301 1.30989 0.94834 1.07816 0.92805 1.24981 0.96391 0.94911 0.97781 1.69968 1.44634 1.11055 1.27425 0.86730 0.80603 0.80565 0.80533 1.20332 1.21396 1.20358 1.22272 0.92228 1.01023 0.98989 0.89243 0.89307 0.89978 0.92896 0.91287 0.90176 0.90846 0.90492 0.93841 0.93086 0.93128 0.92711 0.93180 0.94188 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 9.69 36.01 0.35 -1.26 16 2 C 0.51 7.30 7.77 -10.99 -0.09 7.22 16 3 O -0.55 -10.48 16.73 5.55 0.09 -10.39 16 4 N -0.61 -8.22 2.82 -181.57 -0.51 -8.73 16 5 C 0.08 0.70 9.81 59.85 0.59 1.29 16 6 C 0.12 1.89 4.70 -4.04 -0.02 1.87 16 7 C -0.10 -1.92 3.09 -88.96 -0.28 -2.20 16 8 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 9 C -0.12 -2.25 4.85 -24.74 -0.12 -2.37 16 10 C -0.09 -2.14 5.36 -25.08 -0.13 -2.27 16 11 C 0.04 1.13 2.84 -90.65 -0.26 0.87 16 12 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 13 C -0.51 -14.45 8.38 -34.44 -0.29 -14.74 16 14 H 0.05 1.52 7.33 -52.49 -0.38 1.13 16 15 C 0.06 1.72 5.32 -17.82 -0.09 1.62 16 16 N -0.89 -26.08 12.33 55.43 0.68 -25.39 16 17 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 C -0.11 -2.29 6.02 -25.62 -0.15 -2.44 16 22 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.08 0.58 6.09 -51.93 -0.32 0.27 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.52 6.17 -51.93 -0.32 0.20 16 27 H 0.08 0.79 6.37 -51.93 -0.33 0.45 16 28 H 0.07 1.01 7.95 -51.93 -0.41 0.59 16 29 H 0.08 1.28 7.50 -51.93 -0.39 0.89 16 30 H 0.04 0.74 8.09 -51.93 -0.42 0.32 16 31 H 0.05 0.86 7.55 -51.93 -0.39 0.47 16 32 H 0.05 1.30 7.85 -51.93 -0.41 0.89 16 33 H 0.05 1.36 7.93 -51.93 -0.41 0.95 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.04 0.77 7.84 -51.93 -0.41 0.37 16 36 H 0.05 1.25 7.37 -51.92 -0.38 0.86 16 LS Contribution 287.60 15.07 4.33 4.33 Total: -1.00 -32.18 287.60 -6.74 -38.92 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -5.82 Total: -3.20 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -0.49 Total: -12.40 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.17 Total: -34.12 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.18 -6.74 -38.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261065456.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.915 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds