Wall clock time and date at job start Mon Mar 30 2020 03:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21290 * 119.99357 * 2 1 4 4 N 1.34776 * 120.00522 * 179.97438 * 2 1 3 5 5 C 1.46497 * 119.99556 * 5.28501 * 4 2 1 6 6 C 1.46500 * 120.00123 * 185.28663 * 4 2 1 7 7 C 1.53000 * 109.46783 * 270.00247 * 6 4 2 8 8 H 1.08994 * 110.43729 * 52.45657 * 7 6 4 9 9 C 1.54891 * 110.48699 * 289.77116 * 7 6 4 10 10 C 1.54880 * 102.75182 * 203.38221 * 9 7 6 11 11 C 1.54265 * 104.19634 * 37.94349 * 10 9 7 12 12 H 1.09000 * 110.02933 * 95.72276 * 11 10 9 13 13 C 1.50704 * 110.03458 * 217.10631 * 11 10 9 14 14 H 1.08000 * 120.00192 * 118.54349 * 13 11 10 15 15 C 1.37876 * 119.99656 * 298.54477 * 13 11 10 16 16 N 1.31515 * 120.00320 * 0.02562 * 15 13 11 17 17 Si 1.86809 * 119.99615 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.46842 * 60.00406 * 17 15 13 19 19 H 1.48501 * 109.46887 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47242 * 300.00161 * 17 15 13 21 21 C 1.53871 * 106.59636 * 336.39185 * 11 10 9 22 22 H 1.08996 * 109.47268 * 264.66021 * 1 2 3 23 23 H 1.08996 * 109.47603 * 24.66661 * 1 2 3 24 24 H 1.09004 * 109.46896 * 144.66346 * 1 2 3 25 25 H 1.08996 * 109.47476 * 274.55989 * 5 4 2 26 26 H 1.09003 * 109.47405 * 34.56651 * 5 4 2 27 27 H 1.09002 * 109.46924 * 154.55881 * 5 4 2 28 28 H 1.08994 * 109.46926 * 150.00189 * 6 4 2 29 29 H 1.09000 * 109.46990 * 29.99606 * 6 4 2 30 30 H 1.09006 * 110.75153 * 85.06711 * 9 7 6 31 31 H 1.08996 * 110.75825 * 321.70198 * 9 7 6 32 32 H 1.09002 * 110.48788 * 279.26898 * 10 9 7 33 33 H 1.08995 * 110.49128 * 156.62279 * 10 9 7 34 34 H 0.97003 * 119.99749 * 180.02562 * 16 15 13 35 35 H 1.08999 * 110.03352 * 119.28515 * 21 11 10 36 36 H 1.09010 * 110.03312 * 240.71104 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0505 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 1.4532 -2.4332 -0.1158 6 6 3.6413 -1.1697 0.1174 7 6 4.2647 -1.1047 -1.2783 8 1 3.8499 -0.2690 -1.8419 9 6 4.0400 -2.4374 -2.0350 10 6 5.1842 -2.4350 -3.0788 11 6 6.3838 -1.8260 -2.3238 12 1 7.0122 -2.6196 -1.9194 13 6 7.1886 -0.9529 -3.2517 14 1 7.2993 0.1006 -3.0415 15 6 7.7835 -1.4991 -4.3692 16 7 7.6482 -2.7819 -4.6256 17 14 8.7805 -0.4166 -5.5198 18 1 9.9107 0.1910 -4.7725 19 1 9.3103 -1.2385 -6.6375 20 1 7.9125 0.6581 -6.0646 21 6 5.7991 -0.9803 -1.1790 22 1 -0.3633 -0.0956 1.0232 23 1 -0.3634 0.9338 -0.4289 24 1 -0.3633 -0.8384 -0.5944 25 1 1.1204 -2.7530 0.8716 26 1 0.5878 -2.2967 -0.7644 27 1 2.1099 -3.1920 -0.5413 28 1 3.9641 -2.0828 0.6174 29 1 3.9608 -0.3047 0.6986 30 1 3.0676 -2.4425 -2.5277 31 1 4.1359 -3.2866 -1.3586 32 1 4.9181 -1.8153 -3.9352 33 1 5.4112 -3.4520 -3.3985 34 1 8.0672 -3.1662 -5.4116 35 1 6.1434 -1.3633 -0.2183 36 1 6.0975 0.0618 -1.2946 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261065456.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:42 Heat of formation + Delta-G solvation = -76.059177 kcal Electronic energy + Delta-G solvation = -15944.468404 eV Core-core repulsion = 13426.912502 eV Total energy + Delta-G solvation = -2517.555902 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.90965 -39.00850 -36.45437 -34.55531 -31.91640 -29.93587 -29.78765 -27.69498 -26.40579 -24.66149 -21.30520 -20.59071 -20.05094 -18.55199 -17.76803 -17.18381 -16.72147 -16.51569 -15.59757 -15.36992 -14.55211 -14.25745 -14.13529 -13.88853 -13.56644 -13.46002 -13.12798 -13.01563 -12.95573 -12.66013 -12.52053 -12.38040 -11.74885 -11.61051 -11.46981 -11.29039 -11.14208 -10.76703 -10.75104 -10.46010 -9.55156 -8.13364 -6.22173 1.37772 1.39247 1.46974 1.67978 2.18177 2.41729 3.16640 3.75646 3.95920 4.00352 4.09189 4.34267 4.41987 4.54421 4.62169 4.68415 4.70634 4.77648 4.89467 4.94463 4.99653 5.07365 5.09013 5.17176 5.22519 5.29896 5.46472 5.57409 5.67230 5.70101 5.95030 5.99851 6.40722 6.51285 6.88646 7.24468 7.44354 8.95132 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.045673 B = 0.006120 C = 0.005810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.901060 B = 4574.057247 C = 4817.878358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.493 3.507 3 O -0.607 6.607 4 N -0.613 5.613 5 C 0.067 3.933 6 C 0.129 3.871 7 C -0.091 4.091 8 H 0.040 0.960 9 C -0.101 4.101 10 C -0.085 4.085 11 C 0.035 3.965 12 H -0.001 1.001 13 C -0.536 4.536 14 H 0.044 0.956 15 C 0.013 3.987 16 N -0.917 5.917 17 Si 0.949 3.051 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.275 1.275 21 C -0.102 4.102 22 H 0.114 0.886 23 H 0.085 0.915 24 H 0.110 0.890 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.019 0.981 33 H 0.035 0.965 34 H 0.260 0.740 35 H 0.061 0.939 36 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.513 -2.132 9.546 18.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.284 3.716 3 O -0.489 6.489 4 N -0.345 5.345 5 C -0.075 4.075 6 C 0.006 3.994 7 C -0.111 4.111 8 H 0.058 0.942 9 C -0.139 4.139 10 C -0.123 4.123 11 C 0.017 3.983 12 H 0.018 0.982 13 C -0.574 4.574 14 H 0.062 0.938 15 C -0.186 4.186 16 N -0.556 5.556 17 Si 0.775 3.225 18 H -0.196 1.196 19 H -0.205 1.205 20 H -0.201 1.201 21 C -0.140 4.140 22 H 0.133 0.867 23 H 0.104 0.896 24 H 0.128 0.872 25 H 0.099 0.901 26 H 0.109 0.891 27 H 0.097 0.903 28 H 0.119 0.881 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.038 0.962 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -15.160 -1.758 9.426 17.938 hybrid contribution 1.117 0.620 -1.041 1.648 sum -14.043 -1.138 8.385 16.396 Atomic orbital electron populations 1.21973 0.88050 1.05906 1.06316 1.21770 0.92580 0.82653 0.74644 1.90701 1.72329 1.33314 1.52540 1.48076 1.06937 1.07677 1.71777 1.22207 0.97785 0.83989 1.03475 1.21464 0.79498 1.02846 0.95567 1.22154 0.95053 0.97545 0.96320 0.94185 1.22550 0.97592 0.96355 0.97358 1.22037 0.95308 0.98404 0.96581 1.19266 0.93153 0.93563 0.92350 0.98250 1.21663 1.31949 0.94891 1.08941 0.93759 1.25723 0.97410 0.96224 0.99215 1.70075 1.45283 1.12363 1.27901 0.85753 0.79195 0.78924 0.78658 1.19643 1.20495 1.20085 1.22141 0.94332 0.99047 0.98481 0.86727 0.89617 0.87169 0.90104 0.89051 0.90281 0.88136 0.92151 0.91733 0.90313 0.96163 0.94588 0.93065 0.91991 0.94661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.69 71.24 0.69 -1.78 16 2 C 0.49 13.38 7.77 87.66 0.68 14.06 16 3 O -0.61 -23.49 16.73 -3.06 -0.05 -23.55 16 4 N -0.61 -14.74 2.82 -846.76 -2.39 -17.13 16 5 C 0.07 0.94 9.81 127.77 1.25 2.19 16 6 C 0.13 3.77 4.70 86.38 0.41 4.18 16 7 C -0.09 -3.37 3.09 -9.72 -0.03 -3.40 16 8 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 9 C -0.10 -3.57 4.85 31.88 0.15 -3.41 16 10 C -0.08 -4.09 5.36 31.67 0.17 -3.92 16 11 C 0.04 1.83 2.84 -10.82 -0.03 1.80 16 12 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 13 C -0.54 -31.30 8.38 25.60 0.21 -31.08 16 14 H 0.04 2.59 7.33 -2.91 -0.02 2.57 16 15 C 0.01 0.75 5.32 84.65 0.45 1.20 16 16 N -0.92 -54.66 12.33 21.45 0.26 -54.39 16 17 Si 0.95 45.52 29.54 68.60 2.03 47.54 16 18 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 21 C -0.10 -4.41 6.02 31.32 0.19 -4.22 16 22 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.11 1.04 6.09 -2.38 -0.01 1.02 16 25 H 0.08 0.75 8.14 -2.39 -0.02 0.74 16 26 H 0.09 0.90 6.17 -2.39 -0.01 0.89 16 27 H 0.08 1.17 6.37 -2.39 -0.02 1.16 16 28 H 0.10 2.40 7.95 -2.39 -0.02 2.39 16 29 H 0.06 1.98 7.50 -2.39 -0.02 1.96 16 30 H 0.06 2.03 8.09 -2.38 -0.02 2.01 16 31 H 0.08 2.39 7.55 -2.39 -0.02 2.37 16 32 H 0.02 1.05 7.85 -2.39 -0.02 1.03 16 33 H 0.04 1.82 7.93 -2.39 -0.02 1.80 16 34 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 35 H 0.06 2.37 7.84 -2.39 -0.02 2.36 16 36 H 0.03 1.63 7.37 -2.38 -0.02 1.62 16 Total: -1.00 -73.38 287.60 5.04 -68.35 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: 1.04 Total: 3.56 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: 4.15 Total: -24.38 kcal Atomic # 7 Polarization: -69.40 SS G_CDS: -2.12 Total: -71.52 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.05 Total: -23.55 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -73.38 5.04 -68.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261065456.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.712 kcal (2) G-P(sol) polarization free energy of solvation -73.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds