Wall clock time and date at job start Mon Mar 30 2020 03:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21279 * 119.99868 * 2 1 4 4 N 1.34773 * 119.99916 * 179.97438 * 2 1 3 5 5 C 1.46497 * 119.99918 * 359.97438 * 4 2 1 6 6 C 1.46497 * 119.99737 * 180.02562 * 4 2 1 7 7 H 1.09007 * 109.47056 * 299.17742 * 6 4 2 8 8 C 1.52998 * 109.47597 * 59.18006 * 6 4 2 9 9 C 1.53000 * 109.46754 * 59.99611 * 8 6 4 10 10 C 1.52995 * 109.47092 * 60.00710 * 9 8 6 11 11 C 1.53002 * 109.47095 * 299.99292 * 10 9 8 12 12 H 1.09000 * 109.47604 * 300.00579 * 11 10 9 13 13 C 1.50695 * 109.47443 * 179.97438 * 11 10 9 14 14 H 1.07994 * 120.00469 * 240.00453 * 13 11 10 15 15 C 1.37884 * 119.99587 * 60.00718 * 13 11 10 16 16 N 1.31509 * 120.00090 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99981 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47579 * 89.99253 * 17 15 13 19 19 H 1.48498 * 109.47295 * 209.99977 * 17 15 13 20 20 H 1.48502 * 109.47075 * 329.99557 * 17 15 13 21 21 C 1.53000 * 109.46896 * 60.00190 * 11 10 9 22 22 H 1.09000 * 109.47373 * 240.00412 * 1 2 3 23 23 H 1.09002 * 109.47361 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47411 * 120.00220 * 1 2 3 25 25 H 1.08993 * 109.47539 * 275.91827 * 5 4 2 26 26 H 1.09004 * 109.47198 * 35.92687 * 5 4 2 27 27 H 1.09003 * 109.46878 * 155.91640 * 5 4 2 28 28 H 1.08992 * 109.47472 * 179.97438 * 8 6 4 29 29 H 1.09001 * 109.47162 * 300.00445 * 8 6 4 30 30 H 1.09006 * 109.46970 * 180.02562 * 9 8 6 31 31 H 1.08997 * 109.47591 * 300.00060 * 9 8 6 32 32 H 1.08992 * 109.47516 * 59.99735 * 10 9 8 33 33 H 1.09007 * 109.47040 * 180.02562 * 10 9 8 34 34 H 0.96998 * 120.00027 * 179.97438 * 16 15 13 35 35 H 1.08998 * 109.47441 * 179.97438 * 21 11 10 36 36 H 1.09005 * 109.47110 * 59.99986 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4484 -2.4359 0.0017 6 6 3.6459 -1.1671 0.0011 7 1 4.0095 -0.6663 -0.8962 8 6 4.1555 -0.4278 1.2399 9 6 3.6449 -1.1308 2.4992 10 6 4.1550 -2.5731 2.5204 11 6 3.6454 -3.3125 1.2817 12 1 2.5554 -3.3125 1.2812 13 6 4.1482 -4.7330 1.3021 14 1 4.7694 -5.0976 0.4975 15 6 3.8152 -5.5671 2.3483 16 7 3.0591 -5.1229 3.3284 17 14 4.4390 -7.3276 2.3742 18 1 5.7470 -7.3792 3.0755 19 1 3.4611 -8.1889 3.0863 20 1 4.6049 -7.8145 0.9811 21 6 4.1558 -2.6095 0.0222 22 1 -0.3634 -0.5138 0.8900 23 1 -0.3634 1.0277 0.0005 24 1 -0.3634 -0.5138 -0.8899 25 1 1.1753 -2.6969 1.0240 26 1 0.5458 -2.3348 -0.6011 27 1 2.0791 -3.2199 -0.4174 28 1 5.2454 -0.4282 1.2405 29 1 3.7921 0.5997 1.2249 30 1 4.0076 -0.6039 3.3818 31 1 2.5550 -1.1308 2.4989 32 1 5.2449 -2.5732 2.5209 33 1 3.7909 -3.0741 3.4175 34 1 2.8245 -5.7099 4.0642 35 1 3.7932 -3.1365 -0.8603 36 1 5.2459 -2.6095 0.0226 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261076484.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:45 Heat of formation + Delta-G solvation = -36.745921 kcal Electronic energy + Delta-G solvation = -16809.705886 eV Core-core repulsion = 14293.854735 eV Total energy + Delta-G solvation = -2515.851151 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.02316 -37.34499 -34.11751 -32.77478 -30.22340 -30.06287 -28.24597 -26.06137 -24.69538 -21.51516 -21.09380 -19.44843 -18.12023 -16.62984 -16.10074 -15.33904 -15.21861 -14.68623 -14.10598 -13.23808 -13.13666 -13.07072 -12.57319 -12.39189 -12.07662 -11.89400 -11.61029 -11.31513 -11.21356 -11.08445 -10.93637 -10.68209 -10.36479 -10.10447 -9.80364 -9.36724 -9.24638 -8.91231 -8.51685 -8.24394 -8.02712 -6.00085 -4.05921 3.02717 3.27973 3.35489 3.37876 3.52884 4.41447 4.97031 5.28680 5.40521 5.47534 5.57954 5.63815 5.66800 5.82754 5.96949 6.04824 6.11822 6.33101 6.37659 6.42242 6.51185 6.62044 6.69994 6.77641 6.86385 7.09015 7.16462 7.29965 7.55736 7.74662 7.91093 8.00486 8.15485 8.45294 8.60515 8.97653 9.58224 11.04749 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.041211 B = 0.008352 C = 0.007942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.262632 B = 3351.530414 C = 3524.773642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.506 3.494 3 O -0.559 6.559 4 N -0.596 5.596 5 C 0.070 3.930 6 C 0.151 3.849 7 H 0.058 0.942 8 C -0.131 4.131 9 C -0.112 4.112 10 C -0.110 4.110 11 C 0.026 3.974 12 H 0.056 0.944 13 C -0.513 4.513 14 H 0.052 0.948 15 C 0.063 3.937 16 N -0.889 5.889 17 Si 0.887 3.113 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.118 4.118 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.096 0.904 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.038 0.962 31 H 0.047 0.953 32 H 0.030 0.970 33 H 0.089 0.911 34 H 0.259 0.741 35 H 0.053 0.947 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.060 5.180 -4.966 8.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.294 3.706 3 O -0.439 6.439 4 N -0.328 5.328 5 C -0.072 4.072 6 C 0.048 3.952 7 H 0.076 0.924 8 C -0.169 4.169 9 C -0.150 4.150 10 C -0.148 4.148 11 C 0.008 3.992 12 H 0.073 0.927 13 C -0.552 4.552 14 H 0.070 0.930 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.715 3.285 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.155 4.155 22 H 0.104 0.896 23 H 0.103 0.897 24 H 0.102 0.898 25 H 0.090 0.910 26 H 0.070 0.930 27 H 0.114 0.886 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.107 0.893 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.816 5.637 -4.804 8.331 hybrid contribution 0.399 -1.138 0.173 1.218 sum -3.417 4.498 -4.631 7.305 Atomic orbital electron populations 1.21926 0.92742 1.04518 1.03974 1.20658 0.90311 0.83344 0.76243 1.90626 1.70766 1.31387 1.51074 1.47947 1.06992 1.06092 1.71784 1.22283 0.96156 0.86452 1.02355 1.21106 0.78538 0.98190 0.97355 0.92439 1.21895 0.99924 0.99908 0.95214 1.21528 0.99885 0.98271 0.95310 1.21617 0.98089 0.91640 1.03442 1.19298 0.98351 0.92867 0.88684 0.92686 1.21226 1.31417 0.96008 1.06523 0.92954 1.24932 0.95104 0.98145 0.95654 1.69871 1.36941 1.35589 1.10407 0.86682 0.78629 0.85151 0.78030 1.20844 1.21333 1.20037 1.21975 1.00417 0.92022 1.01116 0.89551 0.89745 0.89813 0.91024 0.93013 0.88594 0.92189 0.91209 0.94317 0.93403 0.95164 0.89284 0.93109 0.92848 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 8.95 36.01 0.32 -1.77 16 2 C 0.51 8.56 7.49 -10.98 -0.08 8.48 16 3 O -0.56 -11.30 15.13 5.56 0.08 -11.21 16 4 N -0.60 -10.21 2.25 -173.93 -0.39 -10.60 16 5 C 0.07 1.10 8.00 59.85 0.48 1.58 16 6 C 0.15 2.78 2.95 -67.93 -0.20 2.58 16 7 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 8 C -0.13 -2.50 5.23 -26.73 -0.14 -2.64 16 9 C -0.11 -2.29 5.76 -26.73 -0.15 -2.44 16 10 C -0.11 -2.54 4.98 -26.73 -0.13 -2.68 16 11 C 0.03 0.59 1.44 -91.77 -0.13 0.46 16 12 H 0.06 1.28 3.66 -51.93 -0.19 1.09 16 13 C -0.51 -13.28 8.56 -34.44 -0.29 -13.57 16 14 H 0.05 1.35 7.74 -52.49 -0.41 0.95 16 15 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 16 N -0.89 -24.24 11.32 55.43 0.63 -23.62 16 17 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 C -0.12 -2.31 4.13 -26.73 -0.11 -2.42 16 22 H 0.09 0.97 8.11 -51.93 -0.42 0.55 16 23 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 24 H 0.08 0.84 7.42 -51.93 -0.39 0.45 16 25 H 0.07 1.25 6.70 -51.93 -0.35 0.90 16 26 H 0.05 0.64 6.69 -51.93 -0.35 0.29 16 27 H 0.10 1.64 4.95 -51.93 -0.26 1.38 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.07 1.39 6.11 -51.93 -0.32 1.07 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 1.00 7.60 -51.93 -0.39 0.60 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 34 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 35 H 0.05 1.00 6.90 -51.93 -0.36 0.64 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 271.43 15.07 4.09 4.09 Total: -1.00 -28.78 271.43 -6.56 -35.34 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -5.41 Total: 1.28 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -0.54 Total: -10.87 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.24 Total: -34.22 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.08 Total: -11.21 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.78 -6.56 -35.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261076484.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.404 kcal (2) G-P(sol) polarization free energy of solvation -28.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds