Wall clock time and date at job start Mon Mar 30 2020 03:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21279 * 119.99868 * 2 1 4 4 N 1.34773 * 119.99916 * 179.97438 * 2 1 3 5 5 C 1.46497 * 119.99918 * 359.97438 * 4 2 1 6 6 C 1.46497 * 119.99737 * 180.02562 * 4 2 1 7 7 H 1.09007 * 109.47056 * 299.17742 * 6 4 2 8 8 C 1.52998 * 109.47597 * 59.18006 * 6 4 2 9 9 C 1.53000 * 109.46754 * 59.99611 * 8 6 4 10 10 C 1.52995 * 109.47092 * 60.00710 * 9 8 6 11 11 C 1.53002 * 109.47095 * 299.99292 * 10 9 8 12 12 H 1.09000 * 109.47604 * 300.00579 * 11 10 9 13 13 C 1.50695 * 109.47443 * 179.97438 * 11 10 9 14 14 H 1.07994 * 120.00469 * 240.00453 * 13 11 10 15 15 C 1.37884 * 119.99587 * 60.00718 * 13 11 10 16 16 N 1.31509 * 120.00090 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99981 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47579 * 89.99253 * 17 15 13 19 19 H 1.48498 * 109.47295 * 209.99977 * 17 15 13 20 20 H 1.48502 * 109.47075 * 329.99557 * 17 15 13 21 21 C 1.53000 * 109.46896 * 60.00190 * 11 10 9 22 22 H 1.09000 * 109.47373 * 240.00412 * 1 2 3 23 23 H 1.09002 * 109.47361 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47411 * 120.00220 * 1 2 3 25 25 H 1.08993 * 109.47539 * 275.91827 * 5 4 2 26 26 H 1.09004 * 109.47198 * 35.92687 * 5 4 2 27 27 H 1.09003 * 109.46878 * 155.91640 * 5 4 2 28 28 H 1.08992 * 109.47472 * 179.97438 * 8 6 4 29 29 H 1.09001 * 109.47162 * 300.00445 * 8 6 4 30 30 H 1.09006 * 109.46970 * 180.02562 * 9 8 6 31 31 H 1.08997 * 109.47591 * 300.00060 * 9 8 6 32 32 H 1.08992 * 109.47516 * 59.99735 * 10 9 8 33 33 H 1.09007 * 109.47040 * 180.02562 * 10 9 8 34 34 H 0.96998 * 120.00027 * 179.97438 * 16 15 13 35 35 H 1.08998 * 109.47441 * 179.97438 * 21 11 10 36 36 H 1.09005 * 109.47110 * 59.99986 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4484 -2.4359 0.0017 6 6 3.6459 -1.1671 0.0011 7 1 4.0095 -0.6663 -0.8962 8 6 4.1555 -0.4278 1.2399 9 6 3.6449 -1.1308 2.4992 10 6 4.1550 -2.5731 2.5204 11 6 3.6454 -3.3125 1.2817 12 1 2.5554 -3.3125 1.2812 13 6 4.1482 -4.7330 1.3021 14 1 4.7694 -5.0976 0.4975 15 6 3.8152 -5.5671 2.3483 16 7 3.0591 -5.1229 3.3284 17 14 4.4390 -7.3276 2.3742 18 1 5.7470 -7.3792 3.0755 19 1 3.4611 -8.1889 3.0863 20 1 4.6049 -7.8145 0.9811 21 6 4.1558 -2.6095 0.0222 22 1 -0.3634 -0.5138 0.8900 23 1 -0.3634 1.0277 0.0005 24 1 -0.3634 -0.5138 -0.8899 25 1 1.1753 -2.6969 1.0240 26 1 0.5458 -2.3348 -0.6011 27 1 2.0791 -3.2199 -0.4174 28 1 5.2454 -0.4282 1.2405 29 1 3.7921 0.5997 1.2249 30 1 4.0076 -0.6039 3.3818 31 1 2.5550 -1.1308 2.4989 32 1 5.2449 -2.5732 2.5209 33 1 3.7909 -3.0741 3.4175 34 1 2.8245 -5.7099 4.0642 35 1 3.7932 -3.1365 -0.8603 36 1 5.2459 -2.6095 0.0226 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261076484.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:45 Heat of formation + Delta-G solvation = -52.764107 kcal Electronic energy + Delta-G solvation = -16810.400486 eV Core-core repulsion = 14293.854735 eV Total energy + Delta-G solvation = -2516.545752 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.45835 -38.88466 -35.67943 -34.57498 -31.86004 -31.59986 -29.52735 -27.55157 -26.53486 -23.06614 -22.80642 -21.03426 -19.55747 -18.44523 -17.51110 -16.83925 -16.73425 -16.40619 -15.71724 -14.87314 -14.66282 -14.48032 -14.05570 -13.86645 -13.49412 -13.28472 -13.03263 -12.88331 -12.83455 -12.71136 -12.49530 -12.44175 -12.10070 -11.83581 -11.63866 -11.13080 -10.82894 -10.63641 -10.28927 -10.14668 -9.44606 -8.01054 -6.12236 1.42802 1.46057 1.53588 1.73945 2.22761 2.47836 3.26022 3.74955 4.04974 4.10810 4.19376 4.41078 4.49364 4.55615 4.60941 4.73193 4.76748 4.81167 4.85528 4.96950 5.01292 5.07219 5.12683 5.18267 5.25374 5.41141 5.49054 5.67907 5.70833 5.76865 6.14679 6.23690 6.48329 6.61859 6.99713 7.29327 7.54163 9.01974 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.041211 B = 0.008352 C = 0.007942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.262632 B = 3351.530414 C = 3524.773642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.498 3.502 3 O -0.596 6.596 4 N -0.599 5.599 5 C 0.074 3.926 6 C 0.152 3.848 7 H 0.065 0.935 8 C -0.125 4.125 9 C -0.102 4.102 10 C -0.103 4.103 11 C 0.023 3.977 12 H 0.055 0.945 13 C -0.527 4.527 14 H 0.048 0.952 15 C 0.018 3.982 16 N -0.913 5.913 17 Si 0.942 3.058 18 H -0.284 1.284 19 H -0.286 1.286 20 H -0.269 1.269 21 C -0.106 4.106 22 H 0.098 0.902 23 H 0.092 0.908 24 H 0.112 0.888 25 H 0.052 0.948 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.041 0.959 32 H 0.018 0.982 33 H 0.057 0.943 34 H 0.258 0.742 35 H 0.063 0.937 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.852 5.172 -6.037 9.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.289 3.711 3 O -0.479 6.479 4 N -0.331 5.331 5 C -0.067 4.067 6 C 0.049 3.951 7 H 0.083 0.917 8 C -0.163 4.163 9 C -0.139 4.139 10 C -0.141 4.141 11 C 0.005 3.995 12 H 0.072 0.928 13 C -0.566 4.566 14 H 0.066 0.934 15 C -0.180 4.180 16 N -0.553 5.553 17 Si 0.769 3.231 18 H -0.211 1.211 19 H -0.212 1.212 20 H -0.193 1.193 21 C -0.144 4.144 22 H 0.116 0.884 23 H 0.111 0.889 24 H 0.130 0.870 25 H 0.070 0.930 26 H 0.112 0.888 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.037 0.963 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.617 5.615 -5.885 9.353 hybrid contribution 0.650 -1.132 0.514 1.403 sum -3.967 4.484 -5.371 8.043 Atomic orbital electron populations 1.21946 0.88760 1.05794 1.05817 1.21516 0.92232 0.82413 0.74962 1.90608 1.71971 1.32566 1.52734 1.48032 1.06462 1.06905 1.71693 1.22215 0.97322 0.85373 1.01830 1.20993 0.79858 0.97012 0.97254 0.91677 1.21825 1.00351 0.99353 0.94757 1.21387 0.99351 0.96649 0.96538 1.21461 0.97158 0.93179 1.02319 1.19305 0.98331 0.91872 0.89947 0.92775 1.21587 1.31082 0.97623 1.06260 0.93372 1.25575 0.95484 1.01434 0.95554 1.69994 1.37930 1.36533 1.10804 0.85804 0.77817 0.81333 0.78117 1.21079 1.21175 1.19342 1.21802 1.00099 0.92674 0.99829 0.88391 0.88922 0.86985 0.92963 0.88827 0.90023 0.91500 0.91728 0.93645 0.94017 0.96318 0.92438 0.93323 0.91858 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 8.95 71.24 0.64 -2.80 16 2 C 0.50 15.81 7.49 87.66 0.66 16.47 16 3 O -0.60 -23.32 15.13 -3.03 -0.05 -23.36 16 4 N -0.60 -19.45 2.25 -822.59 -1.85 -21.30 16 5 C 0.07 2.19 8.00 127.77 1.02 3.21 16 6 C 0.15 5.40 2.95 44.99 0.13 5.54 16 7 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 8 C -0.12 -4.64 5.23 30.59 0.16 -4.48 16 9 C -0.10 -4.11 5.76 30.59 0.18 -3.93 16 10 C -0.10 -4.82 4.98 30.59 0.15 -4.66 16 11 C 0.02 1.06 1.44 -11.54 -0.02 1.05 16 12 H 0.05 2.51 3.66 -2.39 -0.01 2.50 16 13 C -0.53 -27.23 8.56 25.60 0.22 -27.02 16 14 H 0.05 2.47 7.74 -2.91 -0.02 2.45 16 15 C 0.02 0.96 5.30 84.66 0.45 1.41 16 16 N -0.91 -50.25 11.32 21.45 0.24 -50.00 16 17 Si 0.94 42.18 29.54 68.60 2.03 44.21 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 21 C -0.11 -4.08 4.13 30.60 0.13 -3.95 16 22 H 0.10 1.87 8.11 -2.39 -0.02 1.85 16 23 H 0.09 1.82 8.12 -2.39 -0.02 1.80 16 24 H 0.11 1.73 7.42 -2.39 -0.02 1.71 16 25 H 0.05 1.76 6.70 -2.39 -0.02 1.74 16 26 H 0.09 1.96 6.69 -2.38 -0.02 1.94 16 27 H 0.08 2.66 4.95 -2.39 -0.01 2.64 16 28 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.06 2.51 6.11 -2.39 -0.01 2.50 16 30 H 0.04 1.74 8.14 -2.38 -0.02 1.73 16 31 H 0.04 1.72 7.60 -2.39 -0.02 1.70 16 32 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.06 3.06 6.07 -2.38 -0.01 3.05 16 34 H 0.26 13.69 8.31 -92.71 -0.77 12.91 16 35 H 0.06 2.29 6.90 -2.39 -0.02 2.27 16 36 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 Total: -1.00 -61.20 271.43 5.15 -56.05 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 1.06 Total: 13.58 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: 3.72 Total: -19.17 kcal Atomic # 7 Polarization: -69.69 SS G_CDS: -1.61 Total: -71.30 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.05 Total: -23.36 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -61.20 5.15 -56.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261076484.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.286 kcal (2) G-P(sol) polarization free energy of solvation -61.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds