Wall clock time and date at job start Mon Mar 30 2020 03:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21281 * 119.99964 * 2 1 4 4 N 1.34779 * 119.99979 * 179.97438 * 2 1 3 5 5 C 1.46499 * 120.00204 * 4.39169 * 4 2 1 6 6 C 1.46497 * 119.99903 * 184.38999 * 4 2 1 7 7 H 1.09004 * 109.47156 * 67.80907 * 6 4 2 8 8 C 1.52999 * 109.47106 * 307.80951 * 6 4 2 9 9 C 1.53001 * 109.47263 * 300.00065 * 8 6 4 10 10 C 1.53007 * 109.46868 * 299.99982 * 9 8 6 11 11 C 1.52999 * 109.47163 * 59.99958 * 10 9 8 12 12 H 1.09001 * 109.47001 * 59.99806 * 11 10 9 13 13 C 1.50698 * 109.47059 * 179.97438 * 11 10 9 14 14 H 1.07997 * 120.00106 * 120.00272 * 13 11 10 15 15 C 1.37883 * 119.99701 * 299.99673 * 13 11 10 16 16 N 1.31508 * 119.99968 * 0.02562 * 15 13 11 17 17 Si 1.86794 * 119.99648 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47340 * 60.00453 * 17 15 13 19 19 H 1.48508 * 109.47020 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47638 * 300.00271 * 17 15 13 21 21 C 1.52998 * 109.47120 * 187.81001 * 6 4 2 22 22 H 1.09008 * 109.46909 * 264.75144 * 1 2 3 23 23 H 1.08999 * 109.46946 * 24.74923 * 1 2 3 24 24 H 1.09001 * 109.47377 * 144.75262 * 1 2 3 25 25 H 1.08994 * 109.47478 * 204.14383 * 5 4 2 26 26 H 1.09005 * 109.47109 * 324.14277 * 5 4 2 27 27 H 1.08997 * 109.46914 * 84.14241 * 5 4 2 28 28 H 1.09002 * 109.47142 * 60.00153 * 8 6 4 29 29 H 1.09001 * 109.47001 * 180.02562 * 8 6 4 30 30 H 1.08999 * 109.46808 * 180.02562 * 9 8 6 31 31 H 1.08991 * 109.46685 * 59.99731 * 9 8 6 32 32 H 1.09001 * 109.47320 * 299.99959 * 10 9 8 33 33 H 1.08996 * 109.46415 * 179.97438 * 10 9 8 34 34 H 0.97002 * 120.00085 * 180.02562 * 16 15 13 35 35 H 1.09001 * 109.47222 * 180.02562 * 21 6 4 36 36 H 1.09004 * 109.47385 * 299.99710 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4517 -2.4341 -0.0961 6 6 3.6426 -1.1690 0.0976 7 1 3.9416 -0.8176 1.0852 8 6 4.2259 -0.2429 -0.9714 9 6 3.8063 -0.7361 -2.3576 10 6 4.3300 -2.1575 -2.5733 11 6 3.7467 -3.0836 -1.5042 12 1 2.6591 -3.0823 -1.5765 13 6 4.2621 -4.4837 -1.7170 14 1 4.8322 -4.9730 -0.9412 15 6 4.0056 -5.1399 -2.9022 16 7 3.3117 -4.5439 -3.8471 17 14 4.6438 -6.8756 -3.1657 18 1 4.0771 -7.7743 -2.1282 19 1 4.2366 -7.3538 -4.5114 20 1 6.1256 -6.8785 -3.0674 21 6 4.1663 -2.5903 -0.1181 22 1 -0.3633 -0.0940 1.0234 23 1 -0.3633 0.9333 -0.4302 24 1 -0.3634 -0.8393 -0.5931 25 1 2.0538 -3.2338 0.3352 26 1 0.5106 -2.3541 0.4481 27 1 1.2479 -2.6571 -1.1434 28 1 3.8528 0.7697 -0.8178 29 1 5.3135 -0.2446 -0.8994 30 1 4.2222 -0.0765 -3.1192 31 1 2.7188 -0.7348 -2.4298 32 1 5.4176 -2.1588 -2.5010 33 1 4.0306 -2.5090 -3.5606 34 1 3.1309 -5.0058 -4.6807 35 1 5.2539 -2.5917 -0.0453 36 1 3.7508 -3.2502 0.6436 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261076488.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:49 Heat of formation + Delta-G solvation = -54.122918 kcal Electronic energy + Delta-G solvation = -16823.663523 eV Core-core repulsion = 14307.058849 eV Total energy + Delta-G solvation = -2516.604674 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.46071 -38.79551 -35.73485 -34.58784 -31.80033 -31.59894 -29.47697 -27.55161 -26.52282 -23.10214 -22.79748 -21.02928 -19.53253 -18.46240 -17.52355 -16.82084 -16.75568 -16.39761 -15.72342 -14.85268 -14.65087 -14.47785 -14.08939 -13.84100 -13.52333 -13.25783 -13.05156 -12.87917 -12.80596 -12.71222 -12.52751 -12.41783 -12.11173 -11.87962 -11.62876 -11.14149 -10.85061 -10.60724 -10.20494 -10.16785 -9.42086 -8.01414 -6.13395 1.43814 1.45456 1.51701 1.73889 2.24085 2.47307 3.25404 3.74862 4.06086 4.11755 4.22633 4.41891 4.49535 4.56038 4.66890 4.70579 4.74631 4.79352 4.84828 4.98015 5.02660 5.07924 5.12679 5.22390 5.24919 5.42810 5.49231 5.67875 5.73082 5.77470 6.14017 6.23230 6.47201 6.63233 6.99018 7.31175 7.53306 9.01448 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.040610 B = 0.008423 C = 0.008010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.318038 B = 3323.519539 C = 3494.848935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.498 3.502 3 O -0.592 6.592 4 N -0.600 5.600 5 C 0.074 3.926 6 C 0.152 3.848 7 H 0.068 0.932 8 C -0.132 4.132 9 C -0.099 4.099 10 C -0.103 4.103 11 C 0.032 3.968 12 H 0.044 0.956 13 C -0.529 4.529 14 H 0.049 0.951 15 C 0.017 3.983 16 N -0.914 5.914 17 Si 0.944 3.056 18 H -0.270 1.270 19 H -0.289 1.289 20 H -0.278 1.278 21 C -0.107 4.107 22 H 0.115 0.885 23 H 0.091 0.909 24 H 0.095 0.905 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.042 0.958 31 H 0.037 0.963 32 H 0.019 0.981 33 H 0.055 0.945 34 H 0.257 0.743 35 H 0.058 0.942 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.278 4.235 7.454 10.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.289 3.711 3 O -0.475 6.475 4 N -0.332 5.332 5 C -0.068 4.068 6 C 0.049 3.951 7 H 0.085 0.915 8 C -0.170 4.170 9 C -0.137 4.137 10 C -0.142 4.142 11 C 0.014 3.986 12 H 0.062 0.938 13 C -0.567 4.567 14 H 0.068 0.932 15 C -0.182 4.182 16 N -0.554 5.554 17 Si 0.770 3.230 18 H -0.195 1.195 19 H -0.215 1.215 20 H -0.204 1.204 21 C -0.145 4.145 22 H 0.134 0.866 23 H 0.110 0.890 24 H 0.114 0.886 25 H 0.098 0.902 26 H 0.115 0.885 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.037 0.963 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.031 4.704 7.281 10.022 hybrid contribution 0.656 -1.066 -0.678 1.424 sum -4.375 3.638 6.602 8.716 Atomic orbital electron populations 1.21956 0.88824 1.05602 1.06096 1.21519 0.92202 0.82473 0.74904 1.90565 1.71563 1.32686 1.52651 1.48014 1.06697 1.07034 1.71479 1.22151 0.97458 0.85393 1.01757 1.21030 0.79722 0.96643 0.97729 0.91456 1.21960 1.00032 1.00332 0.94637 1.21352 0.99180 0.96981 0.96197 1.21471 0.97057 0.93232 1.02410 1.19082 0.97608 0.92084 0.89824 0.93804 1.21571 1.33908 1.00548 1.00652 0.93232 1.25605 0.95550 1.00902 0.96100 1.70001 1.40725 1.38186 1.06475 0.85840 0.78629 0.81428 0.77058 1.19479 1.21472 1.20418 1.21836 1.00072 0.93269 0.99317 0.86647 0.88988 0.88630 0.90192 0.88537 0.93177 0.90407 0.91823 0.93914 0.94424 0.96263 0.92608 0.93335 0.92304 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.47 9.22 71.24 0.66 -2.81 16 2 C 0.50 15.83 7.23 87.66 0.63 16.46 16 3 O -0.59 -23.05 14.53 -3.03 -0.04 -23.10 16 4 N -0.60 -19.46 2.30 -822.60 -1.90 -21.35 16 5 C 0.07 2.15 7.74 127.77 0.99 3.14 16 6 C 0.15 5.38 3.12 44.99 0.14 5.52 16 7 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 8 C -0.13 -4.98 5.09 30.59 0.16 -4.83 16 9 C -0.10 -4.15 5.76 30.60 0.18 -3.97 16 10 C -0.10 -4.95 4.98 30.60 0.15 -4.79 16 11 C 0.03 1.48 1.59 -11.54 -0.02 1.46 16 12 H 0.04 2.10 4.07 -2.39 -0.01 2.09 16 13 C -0.53 -27.56 8.56 25.60 0.22 -27.35 16 14 H 0.05 2.55 7.74 -2.91 -0.02 2.52 16 15 C 0.02 0.91 5.30 84.66 0.45 1.35 16 16 N -0.91 -51.08 11.32 21.45 0.24 -50.84 16 17 Si 0.94 42.46 29.54 68.60 2.03 44.48 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 C -0.11 -4.13 4.12 30.59 0.13 -4.00 16 22 H 0.12 1.79 8.14 -2.38 -0.02 1.77 16 23 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.09 1.77 6.85 -2.39 -0.02 1.75 16 25 H 0.08 2.47 5.38 -2.39 -0.01 2.46 16 26 H 0.10 1.96 6.78 -2.38 -0.02 1.95 16 27 H 0.05 1.71 6.42 -2.39 -0.02 1.69 16 28 H 0.08 3.09 5.53 -2.39 -0.01 3.08 16 29 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.04 1.62 7.36 -2.39 -0.02 1.60 16 32 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 3.03 6.07 -2.39 -0.01 3.02 16 34 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 35 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.07 2.35 6.60 -2.38 -0.02 2.34 16 Total: -1.00 -62.03 269.84 5.07 -56.96 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 1.06 Total: 13.65 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: 3.68 Total: -19.81 kcal Atomic # 7 Polarization: -70.54 SS G_CDS: -1.65 Total: -72.19 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.04 Total: -23.10 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -62.03 5.07 -56.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261076488.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.836 kcal (2) G-P(sol) polarization free energy of solvation -62.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds