Wall clock time and date at job start Mon Mar 30 2020 03:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47156 * 2 1 4 4 C 1.53007 * 109.47329 * 120.00090 * 2 1 3 5 5 H 1.09001 * 110.88475 * 303.81268 * 4 2 1 6 6 C 1.54629 * 110.96815 * 67.62230 * 4 2 1 7 7 C 1.51285 * 104.25861 * 142.69853 * 6 4 2 8 8 O 1.21274 * 124.94900 * 164.00588 * 7 6 4 9 9 N 1.34424 * 110.11021 * 344.14858 * 7 6 4 10 10 C 1.46500 * 124.34798 * 179.43672 * 9 7 6 11 11 H 1.09000 * 109.47175 * 179.69590 * 10 9 7 12 12 C 1.53006 * 109.46998 * 59.69721 * 10 9 7 13 13 C 1.50697 * 109.46896 * 299.69792 * 10 9 7 14 14 H 1.07994 * 120.00496 * 359.97438 * 13 10 9 15 15 C 1.37878 * 119.99687 * 179.97438 * 13 10 9 16 16 N 1.31518 * 120.00216 * 0.02562 * 15 13 10 17 17 Si 1.86797 * 120.00016 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.46954 * 60.00173 * 17 15 13 19 19 H 1.48503 * 109.47431 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47490 * 300.00258 * 17 15 13 21 21 C 1.46763 * 111.30013 * 359.16331 * 9 7 6 22 22 H 1.08998 * 109.47299 * 299.99565 * 1 2 3 23 23 H 1.09001 * 109.47302 * 59.99999 * 1 2 3 24 24 H 1.09002 * 109.46706 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47299 * 240.00435 * 2 1 3 26 26 H 1.09010 * 109.46945 * 60.00402 * 3 2 1 27 27 H 1.08995 * 109.47462 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47631 * 300.00429 * 3 2 1 29 29 H 1.08997 * 110.48305 * 261.59511 * 6 4 2 30 30 H 1.09004 * 110.48453 * 24.10917 * 6 4 2 31 31 H 1.09001 * 109.46801 * 60.00058 * 12 10 9 32 32 H 1.09001 * 109.46998 * 179.97438 * 12 10 9 33 33 H 1.09000 * 109.47050 * 299.99945 * 12 10 9 34 34 H 0.96999 * 120.00239 * 180.02562 * 16 15 13 35 35 H 1.09006 * 110.24027 * 136.28526 * 21 9 7 36 36 H 1.08997 * 110.25264 * 258.19623 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6353 -0.2662 2.1532 6 6 1.7062 -2.2300 1.1922 7 6 2.9133 -2.9023 1.8084 8 8 2.9441 -4.0486 2.2031 9 7 3.9460 -2.0431 1.8575 10 6 5.2650 -2.3666 2.4070 11 1 5.9177 -1.4980 2.3204 12 6 5.8685 -3.5375 1.6286 13 6 5.1249 -2.7472 3.8583 14 1 4.1510 -2.7476 4.3250 15 6 6.2403 -3.0949 4.5905 16 7 7.4265 -3.0939 4.0225 17 14 6.0669 -3.5659 6.3898 18 1 5.1769 -4.7489 6.5082 19 1 7.4038 -3.8940 6.9468 20 1 5.4820 -2.4289 7.1451 21 6 3.5843 -0.7415 1.2841 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.6766 1.9563 0.8901 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 0.8089 -2.4444 1.7726 30 1 1.5777 -2.5535 0.1592 31 1 5.9697 -3.2622 0.5788 32 1 6.8500 -3.7780 2.0371 33 1 5.2158 -4.4062 1.7151 34 1 8.2111 -3.3388 4.5375 35 1 3.9579 0.0653 1.9148 36 1 3.9870 -0.6484 0.2756 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261076992.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:18 Heat of formation + Delta-G solvation = -53.059952 kcal Electronic energy + Delta-G solvation = -16223.225630 eV Core-core repulsion = 13706.667050 eV Total energy + Delta-G solvation = -2516.558580 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.79087 -36.67561 -34.85526 -33.23038 -30.94569 -28.33771 -27.45709 -26.17015 -25.10813 -22.36252 -21.51083 -19.77763 -18.24227 -16.36572 -15.85843 -15.59837 -14.68382 -14.41605 -13.84946 -13.54646 -13.33163 -12.94761 -12.68421 -12.48722 -12.37588 -12.18430 -11.55265 -11.45258 -11.18301 -10.97124 -10.82631 -10.76931 -10.57649 -10.46750 -10.31460 -10.23068 -9.99520 -9.27418 -8.63105 -8.28250 -7.52018 -6.00206 -4.04630 3.35792 3.39101 3.44220 3.58793 4.13662 4.50236 4.68621 4.69757 4.83376 5.16219 5.31562 5.34767 5.45292 5.47556 5.59938 5.75749 5.80841 5.89749 5.94105 5.99832 6.08841 6.14119 6.21828 6.29090 6.47859 6.78034 6.99218 7.15095 7.29961 7.77145 7.85205 8.12797 8.17158 8.53363 8.94344 9.26971 9.61775 11.05435 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.038531 B = 0.007221 C = 0.007113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.509321 B = 3876.851929 C = 3935.643489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.149 4.149 4 C -0.096 4.096 5 H 0.086 0.914 6 C -0.153 4.153 7 C 0.510 3.490 8 O -0.531 6.531 9 N -0.601 5.601 10 C 0.278 3.722 11 H 0.043 0.957 12 C -0.152 4.152 13 C -0.508 4.508 14 H 0.058 0.942 15 C 0.061 3.939 16 N -0.896 5.896 17 Si 0.899 3.101 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.278 1.278 21 C 0.108 3.892 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.006 0.994 32 H 0.092 0.908 33 H 0.045 0.955 34 H 0.262 0.738 35 H 0.071 0.929 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.010 8.465 -8.160 15.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.103 4.103 3 C -0.206 4.206 4 C -0.115 4.115 5 H 0.105 0.895 6 C -0.194 4.194 7 C 0.296 3.704 8 O -0.409 6.409 9 N -0.334 5.334 10 C 0.179 3.821 11 H 0.061 0.939 12 C -0.211 4.211 13 C -0.547 4.547 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.536 5.536 17 Si 0.727 3.273 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.204 1.204 21 C -0.016 4.016 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.025 0.975 32 H 0.110 0.890 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.684 7.812 -7.861 14.717 hybrid contribution -0.003 -0.167 0.948 0.963 sum -9.687 7.644 -6.912 14.144 Atomic orbital electron populations 1.21840 0.95145 1.01896 1.01527 1.21111 0.95737 0.96201 0.97289 1.21865 1.01520 0.95704 1.01561 1.22218 0.95479 0.94900 0.98918 0.89548 1.22457 0.98924 0.95371 1.02621 1.20518 0.84990 0.86009 0.78918 1.90656 1.83559 1.17376 1.49264 1.48822 1.14071 1.11552 1.58961 1.18760 0.76510 0.94522 0.92305 0.93939 1.22114 1.03891 0.99740 0.95323 1.21279 0.93804 1.45448 0.94190 0.92407 1.24859 0.95090 0.95316 0.98694 1.69860 0.98222 1.49092 1.36386 0.86529 0.77058 0.79133 0.84548 1.20134 1.21240 1.20364 1.22010 0.93830 0.87562 0.98245 0.92664 0.92892 0.92476 0.90940 0.92597 0.92199 0.92894 0.89242 0.88998 0.97502 0.88992 0.93579 0.92795 0.91035 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.05 37.16 0.34 -0.97 16 2 C -0.08 -0.86 2.28 -90.62 -0.21 -1.07 16 3 C -0.15 -1.37 8.97 37.16 0.33 -1.04 16 4 C -0.10 -1.27 2.68 -88.98 -0.24 -1.51 16 5 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 6 C -0.15 -2.36 5.64 -26.74 -0.15 -2.52 16 7 C 0.51 11.24 7.33 -10.86 -0.08 11.16 16 8 O -0.53 -14.15 15.96 5.56 0.09 -14.06 16 9 N -0.60 -13.16 2.82 -166.16 -0.47 -13.62 16 10 C 0.28 7.23 2.86 -69.08 -0.20 7.03 16 11 H 0.04 1.13 8.07 -51.93 -0.42 0.71 16 12 C -0.15 -3.96 8.97 37.16 0.33 -3.63 16 13 C -0.51 -14.66 8.09 -34.44 -0.28 -14.94 16 14 H 0.06 1.73 7.69 -52.49 -0.40 1.33 16 15 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 16 N -0.90 -25.90 11.32 55.43 0.63 -25.28 16 17 Si 0.90 22.35 29.54 -169.99 -5.02 17.33 16 18 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C 0.11 1.74 5.79 -3.12 -0.02 1.73 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.51 7.55 -51.93 -0.39 0.12 16 25 H 0.07 0.74 8.06 -51.93 -0.42 0.32 16 26 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 27 H 0.06 0.57 7.16 -51.93 -0.37 0.20 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.09 1.26 7.84 -51.93 -0.41 0.85 16 31 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.09 2.55 6.07 -51.93 -0.32 2.24 16 33 H 0.05 1.27 6.75 -51.93 -0.35 0.92 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.06 0.87 7.70 -51.93 -0.40 0.47 16 LS Contribution 288.28 15.07 4.34 4.34 Total: -1.00 -32.00 288.28 -6.69 -38.69 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -6.00 Total: -3.30 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -0.26 Total: -4.10 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.16 Total: -38.90 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.09 Total: -14.06 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.00 -6.69 -38.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261076992.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.372 kcal (2) G-P(sol) polarization free energy of solvation -32.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds