Wall clock time and date at job start Mon Mar 30 2020 03:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47156 * 2 1 4 4 C 1.53007 * 109.47329 * 120.00090 * 2 1 3 5 5 H 1.09001 * 110.88475 * 303.81268 * 4 2 1 6 6 C 1.54629 * 110.96815 * 67.62230 * 4 2 1 7 7 C 1.51285 * 104.25861 * 142.69853 * 6 4 2 8 8 O 1.21274 * 124.94900 * 164.00588 * 7 6 4 9 9 N 1.34424 * 110.11021 * 344.14858 * 7 6 4 10 10 C 1.46500 * 124.34798 * 179.43672 * 9 7 6 11 11 H 1.09000 * 109.47175 * 179.69590 * 10 9 7 12 12 C 1.53006 * 109.46998 * 59.69721 * 10 9 7 13 13 C 1.50697 * 109.46896 * 299.69792 * 10 9 7 14 14 H 1.07994 * 120.00496 * 359.97438 * 13 10 9 15 15 C 1.37878 * 119.99687 * 179.97438 * 13 10 9 16 16 N 1.31518 * 120.00216 * 0.02562 * 15 13 10 17 17 Si 1.86797 * 120.00016 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.46954 * 60.00173 * 17 15 13 19 19 H 1.48503 * 109.47431 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47490 * 300.00258 * 17 15 13 21 21 C 1.46763 * 111.30013 * 359.16331 * 9 7 6 22 22 H 1.08998 * 109.47299 * 299.99565 * 1 2 3 23 23 H 1.09001 * 109.47302 * 59.99999 * 1 2 3 24 24 H 1.09002 * 109.46706 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47299 * 240.00435 * 2 1 3 26 26 H 1.09010 * 109.46945 * 60.00402 * 3 2 1 27 27 H 1.08995 * 109.47462 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47631 * 300.00429 * 3 2 1 29 29 H 1.08997 * 110.48305 * 261.59511 * 6 4 2 30 30 H 1.09004 * 110.48453 * 24.10917 * 6 4 2 31 31 H 1.09001 * 109.46801 * 60.00058 * 12 10 9 32 32 H 1.09001 * 109.46998 * 179.97438 * 12 10 9 33 33 H 1.09000 * 109.47050 * 299.99945 * 12 10 9 34 34 H 0.96999 * 120.00239 * 180.02562 * 16 15 13 35 35 H 1.09006 * 110.24027 * 136.28526 * 21 9 7 36 36 H 1.08997 * 110.25264 * 258.19623 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6353 -0.2662 2.1532 6 6 1.7062 -2.2300 1.1922 7 6 2.9133 -2.9023 1.8084 8 8 2.9441 -4.0486 2.2031 9 7 3.9460 -2.0431 1.8575 10 6 5.2650 -2.3666 2.4070 11 1 5.9177 -1.4980 2.3204 12 6 5.8685 -3.5375 1.6286 13 6 5.1249 -2.7472 3.8583 14 1 4.1510 -2.7476 4.3250 15 6 6.2403 -3.0949 4.5905 16 7 7.4265 -3.0939 4.0225 17 14 6.0669 -3.5659 6.3898 18 1 5.1769 -4.7489 6.5082 19 1 7.4038 -3.8940 6.9468 20 1 5.4820 -2.4289 7.1451 21 6 3.5843 -0.7415 1.2841 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.6766 1.9563 0.8901 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 0.8089 -2.4444 1.7726 30 1 1.5777 -2.5535 0.1592 31 1 5.9697 -3.2622 0.5788 32 1 6.8500 -3.7780 2.0371 33 1 5.2158 -4.4062 1.7151 34 1 8.2111 -3.3388 4.5375 35 1 3.9579 0.0653 1.9148 36 1 3.9870 -0.6484 0.2756 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261076992.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:18 Heat of formation + Delta-G solvation = -72.856355 kcal Electronic energy + Delta-G solvation = -16224.084067 eV Core-core repulsion = 13706.667050 eV Total energy + Delta-G solvation = -2517.417017 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.31543 -38.02363 -36.68116 -34.93479 -32.68951 -29.85058 -28.61672 -27.32107 -27.22425 -23.73683 -23.18441 -20.74695 -20.00941 -18.40005 -17.45901 -17.18433 -16.32897 -15.98485 -15.21732 -14.85206 -14.61501 -14.55718 -14.16362 -13.91559 -13.68695 -13.42947 -13.07723 -12.87525 -12.77075 -12.63784 -12.52800 -12.27454 -12.19198 -12.10234 -11.57947 -11.50601 -11.33602 -11.26170 -10.65853 -10.25640 -9.32152 -8.18259 -6.30591 1.34569 1.38538 1.45691 1.89362 2.34655 2.57409 3.08810 3.56443 3.58209 3.79587 4.20527 4.33620 4.49617 4.53958 4.67619 4.67975 4.76899 4.85411 4.85906 4.94066 4.99124 5.05094 5.11622 5.16404 5.28830 5.30162 5.38844 5.56090 5.58373 5.61953 5.77072 6.08354 6.13670 6.66487 6.78899 7.31971 7.59362 8.85448 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.038531 B = 0.007221 C = 0.007113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.509321 B = 3876.851929 C = 3935.643489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 C -0.149 4.149 4 C -0.081 4.081 5 H 0.091 0.909 6 C -0.137 4.137 7 C 0.490 3.510 8 O -0.591 6.591 9 N -0.611 5.611 10 C 0.279 3.721 11 H 0.033 0.967 12 C -0.138 4.138 13 C -0.529 4.529 14 H 0.037 0.963 15 C 0.018 3.982 16 N -0.914 5.914 17 Si 0.956 3.044 18 H -0.285 1.285 19 H -0.273 1.273 20 H -0.267 1.267 21 C 0.101 3.899 22 H 0.057 0.943 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.077 0.923 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.029 0.971 32 H 0.071 0.929 33 H 0.021 0.979 34 H 0.266 0.734 35 H 0.073 0.927 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.298 9.980 -8.866 17.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 C -0.206 4.206 4 C -0.099 4.099 5 H 0.109 0.891 6 C -0.177 4.177 7 C 0.279 3.721 8 O -0.472 6.472 9 N -0.343 5.343 10 C 0.177 3.823 11 H 0.051 0.949 12 C -0.196 4.196 13 C -0.568 4.568 14 H 0.055 0.945 15 C -0.181 4.181 16 N -0.553 5.553 17 Si 0.782 3.218 18 H -0.211 1.211 19 H -0.197 1.197 20 H -0.192 1.192 21 C -0.022 4.022 22 H 0.076 0.924 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.096 0.904 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.122 0.878 30 H 0.134 0.866 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.981 9.381 -8.591 16.805 hybrid contribution 0.421 -0.620 1.135 1.360 sum -10.561 8.761 -7.456 15.616 Atomic orbital electron populations 1.21835 0.93827 1.02206 1.02428 1.21081 0.96711 0.96355 0.95466 1.21867 1.01171 0.95115 1.02480 1.22229 0.92960 0.93714 1.01038 0.89111 1.22418 0.95892 0.95982 1.03395 1.21687 0.86788 0.85439 0.78190 1.90608 1.84818 1.19988 1.51785 1.48864 1.12803 1.13941 1.58642 1.18451 0.78701 0.93785 0.91321 0.94891 1.21905 1.02056 0.98993 0.96660 1.21441 0.93032 1.46369 0.95950 0.94508 1.25585 0.94856 0.95134 1.02570 1.69941 0.98621 1.49088 1.37680 0.85642 0.77418 0.78602 0.80151 1.21113 1.19730 1.19208 1.22344 0.96297 0.84742 0.98793 0.92428 0.91427 0.92492 0.90444 0.92403 0.92785 0.91344 0.87820 0.86591 0.95162 0.91043 0.95992 0.92458 0.90886 0.90310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.05 71.98 0.65 -1.38 16 2 C -0.08 -1.29 2.28 -10.79 -0.02 -1.32 16 3 C -0.15 -2.23 8.97 71.98 0.65 -1.59 16 4 C -0.08 -1.91 2.68 -9.73 -0.03 -1.94 16 5 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 6 C -0.14 -3.94 5.64 30.59 0.17 -3.76 16 7 C 0.49 21.67 7.33 87.90 0.64 22.31 16 8 O -0.59 -32.41 15.96 -3.01 -0.05 -32.46 16 9 N -0.61 -26.75 2.82 -798.19 -2.25 -29.00 16 10 C 0.28 14.76 2.86 44.25 0.13 14.88 16 11 H 0.03 1.79 8.07 -2.39 -0.02 1.77 16 12 C -0.14 -7.33 8.97 71.98 0.65 -6.68 16 13 C -0.53 -31.29 8.09 25.60 0.21 -31.08 16 14 H 0.04 2.27 7.69 -2.91 -0.02 2.25 16 15 C 0.02 1.03 5.30 84.65 0.45 1.48 16 16 N -0.91 -53.41 11.32 21.45 0.24 -53.17 16 17 Si 0.96 46.24 29.54 68.60 2.03 48.27 16 18 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 19 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 21 C 0.10 3.10 5.79 86.83 0.50 3.60 16 22 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.06 0.81 7.55 -2.39 -0.02 0.79 16 25 H 0.08 1.27 8.06 -2.39 -0.02 1.25 16 26 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.05 0.87 7.16 -2.39 -0.02 0.86 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.12 2.81 7.84 -2.38 -0.02 2.79 16 31 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 4.07 6.07 -2.39 -0.01 4.05 16 33 H 0.02 1.22 6.75 -2.39 -0.02 1.20 16 34 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 35 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 36 H 0.08 2.13 7.70 -2.39 -0.02 2.11 16 Total: -1.00 -71.08 288.28 4.99 -66.09 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: 1.03 Total: 5.74 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 3.99 Total: -5.47 kcal Atomic # 7 Polarization: -80.15 SS G_CDS: -2.01 Total: -82.16 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -0.05 Total: -32.46 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -71.08 4.99 -66.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261076992.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.771 kcal (2) G-P(sol) polarization free energy of solvation -71.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds