Wall clock time and date at job start Mon Mar 30 2020 03:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 C 1.50701 * 109.47097 * 120.00098 * 2 1 3 5 5 H 1.08001 * 120.00213 * 119.99401 * 4 2 1 6 6 C 1.37880 * 119.99755 * 300.00020 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99825 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47088 * 60.00147 * 8 6 4 10 10 H 1.48496 * 109.47117 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47600 * 300.00319 * 8 6 4 12 12 N 1.46506 * 109.47035 * 239.99826 * 2 1 3 13 13 C 1.45756 * 117.94164 * 120.00153 * 12 2 1 14 14 C 1.52928 * 110.48252 * 160.92500 * 13 12 2 15 15 C 1.53337 * 108.67411 * 50.75366 * 14 13 12 16 16 C 1.52999 * 109.67676 * 52.20122 * 15 14 13 17 17 C 1.53006 * 109.67258 * 172.73439 * 15 14 13 18 18 C 1.53068 * 108.42642 * 292.46881 * 15 14 13 19 19 C 1.33349 * 117.94751 * 299.73689 * 12 2 1 20 20 O 1.21277 * 118.24604 * 2.22774 * 19 12 2 21 21 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 22 22 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47060 * 300.00030 * 1 2 3 24 24 H 0.97003 * 119.99339 * 179.97438 * 7 6 4 25 25 H 1.08992 * 109.30234 * 281.23570 * 13 12 2 26 26 H 1.08999 * 109.30004 * 40.82189 * 13 12 2 27 27 H 1.08998 * 109.59894 * 170.50936 * 14 13 12 28 28 H 1.09001 * 109.60357 * 290.83133 * 14 13 12 29 29 H 1.08999 * 109.46920 * 59.99753 * 16 15 14 30 30 H 1.08997 * 109.47511 * 179.97438 * 16 15 14 31 31 H 1.09005 * 109.47350 * 299.99888 * 16 15 14 32 32 H 1.08993 * 109.46955 * 60.00226 * 17 15 14 33 33 H 1.09002 * 109.46718 * 179.97438 * 17 15 14 34 34 H 1.09001 * 109.46751 * 299.99528 * 17 15 14 35 35 H 1.09003 * 109.40100 * 169.03287 * 18 15 14 36 36 H 1.09006 * 109.39743 * 288.85548 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6033 8 14 2.3213 -1.1204 4.0079 9 1 3.8063 -1.1209 4.0082 10 1 1.8269 -0.4199 5.2204 11 1 1.8258 -2.5203 4.0078 12 7 2.0184 -0.6907 -1.1962 13 6 2.8530 0.0604 -2.1256 14 6 3.6413 -0.8916 -3.0261 15 6 2.6685 -1.9062 -3.6389 16 6 1.5027 -1.1678 -4.2996 17 6 3.3988 -2.7550 -4.6817 18 6 2.1401 -2.8068 -2.5197 19 6 1.6758 -1.9685 -1.3637 20 8 0.9460 -2.4796 -0.5409 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 0.7090 1.1613 3.4844 25 1 2.2208 0.6990 -2.7423 26 1 3.5512 0.6801 -1.5628 27 1 4.1273 -0.3251 -3.8204 28 1 4.3944 -1.4138 -2.4360 29 1 1.8844 -0.5138 -5.0836 30 1 0.8136 -1.8919 -4.7344 31 1 0.9796 -0.5716 -3.5519 32 1 4.2226 -3.2863 -4.2053 33 1 2.7045 -3.4751 -5.1147 34 1 3.7893 -2.1084 -5.4676 35 1 1.3080 -3.4018 -2.8962 36 1 2.9365 -3.4704 -2.1826 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261097673.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:30 Heat of formation + Delta-G solvation = -44.622697 kcal Electronic energy + Delta-G solvation = -16737.635936 eV Core-core repulsion = 14221.443222 eV Total energy + Delta-G solvation = -2516.192714 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.04430 -36.81125 -34.83003 -32.65722 -29.93643 -28.85983 -27.25242 -26.93296 -25.01651 -23.29284 -21.38443 -19.53441 -17.16338 -16.48295 -15.90626 -15.08460 -14.86798 -14.46331 -14.29438 -13.83569 -13.03397 -12.72595 -12.58962 -12.31437 -12.07247 -11.94964 -11.69467 -11.24756 -11.04279 -10.95804 -10.79244 -10.68719 -10.49674 -10.31965 -10.25209 -10.14476 -9.86284 -9.10931 -8.46017 -8.11139 -7.44694 -5.91190 -3.93354 3.39410 3.42873 3.48436 3.72008 4.11563 4.55346 4.76780 4.85302 4.90504 5.27940 5.40691 5.46227 5.51563 5.68449 5.75548 5.81441 5.84570 5.94196 6.06333 6.09942 6.12107 6.22142 6.32715 6.34508 6.52564 6.89979 7.11601 7.28579 7.35603 7.84424 8.00428 8.20569 8.34220 8.79244 9.04348 9.36833 9.70284 11.14724 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.042202 B = 0.008401 C = 0.008093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.320917 B = 3332.132037 C = 3458.873886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.267 3.733 3 H 0.039 0.961 4 C -0.494 4.494 5 H 0.055 0.945 6 C 0.059 3.941 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.592 5.592 13 C 0.115 3.885 14 C -0.124 4.124 15 C -0.068 4.068 16 C -0.145 4.145 17 C -0.138 4.138 18 C -0.127 4.127 19 C 0.507 3.493 20 O -0.535 6.535 21 H 0.000 1.000 22 H 0.057 0.943 23 H 0.087 0.913 24 H 0.260 0.740 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.088 0.912 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.794 -2.427 -13.782 14.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.166 3.834 3 H 0.057 0.943 4 C -0.533 4.533 5 H 0.073 0.927 6 C -0.142 4.142 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.324 5.324 13 C -0.009 4.009 14 C -0.161 4.161 15 C -0.068 4.068 16 C -0.202 4.202 17 C -0.195 4.195 18 C -0.167 4.167 19 C 0.294 3.706 20 O -0.413 6.413 21 H 0.019 0.981 22 H 0.076 0.924 23 H 0.105 0.895 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.334 -2.573 -13.213 14.142 hybrid contribution 0.414 -0.394 0.807 0.989 sum 4.748 -2.967 -12.406 13.611 Atomic orbital electron populations 1.22155 0.98031 1.01615 0.99535 1.18839 0.91695 0.91912 0.80924 0.94288 1.21206 1.30290 1.11736 0.90065 0.92693 1.24837 0.95367 0.95147 0.98809 1.69866 1.37367 1.23213 1.23433 0.86575 0.78822 0.79985 0.82107 1.20539 1.21372 1.20272 1.47690 1.49520 1.10892 1.24322 1.21254 0.93673 0.94295 0.91673 1.21943 0.97774 0.97498 0.98927 1.20637 0.95804 0.95480 0.94899 1.21943 0.97470 1.00248 1.00516 1.21841 1.00013 0.99439 0.98202 1.21815 1.02334 0.98271 0.94292 1.19633 0.81834 0.82393 0.86781 1.90680 1.36574 1.70101 1.43906 0.98095 0.92388 0.89483 0.93009 0.92713 0.91221 0.90730 0.91196 0.92660 0.92814 0.91684 0.92630 0.92649 0.92626 0.89382 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 8.86 37.16 0.33 -3.76 16 2 C 0.27 6.93 2.60 -69.08 -0.18 6.75 16 3 H 0.04 1.05 7.79 -51.93 -0.40 0.64 16 4 C -0.49 -14.31 7.42 -34.44 -0.26 -14.56 16 5 H 0.05 1.65 7.40 -52.49 -0.39 1.26 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.90 -26.42 11.32 55.43 0.63 -25.79 16 8 Si 0.90 22.65 29.54 -169.99 -5.02 17.63 16 9 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 12 N -0.59 -12.70 2.57 -168.69 -0.43 -13.14 16 13 C 0.12 1.88 5.47 -4.48 -0.02 1.86 16 14 C -0.12 -1.60 4.95 -26.59 -0.13 -1.73 16 15 C -0.07 -0.86 0.79 -154.30 -0.12 -0.98 16 16 C -0.14 -1.79 7.81 37.16 0.29 -1.50 16 17 C -0.14 -1.37 8.49 37.16 0.32 -1.05 16 18 C -0.13 -2.02 4.79 -28.11 -0.13 -2.16 16 19 C 0.51 11.01 6.16 -11.88 -0.07 10.94 16 20 O -0.54 -14.21 13.40 5.56 0.07 -14.14 16 21 H 0.00 0.00 8.14 -51.93 -0.42 -0.42 16 22 H 0.06 1.62 5.86 -51.93 -0.30 1.32 16 23 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 24 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.05 0.83 6.87 -51.93 -0.36 0.47 16 26 H 0.07 1.15 8.04 -51.93 -0.42 0.73 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.97 5.92 -51.93 -0.31 0.66 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 1.33 8.11 -51.93 -0.42 0.91 16 36 H 0.09 1.32 8.10 -51.93 -0.42 0.90 16 LS Contribution 278.38 15.07 4.20 4.20 Total: -1.00 -32.19 278.38 -6.49 -38.68 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -5.85 Total: -2.86 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -0.08 Total: -4.59 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.19 Total: -38.93 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: 0.07 Total: -14.14 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.19 -6.49 -38.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261097673.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.944 kcal (2) G-P(sol) polarization free energy of solvation -32.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds