Wall clock time and date at job start Mon Mar 30 2020 03:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 C 1.50701 * 109.47097 * 120.00098 * 2 1 3 5 5 H 1.08001 * 120.00213 * 119.99401 * 4 2 1 6 6 C 1.37880 * 119.99755 * 300.00020 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99825 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47088 * 60.00147 * 8 6 4 10 10 H 1.48496 * 109.47117 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47600 * 300.00319 * 8 6 4 12 12 N 1.46506 * 109.47035 * 239.99826 * 2 1 3 13 13 C 1.45756 * 117.94164 * 120.00153 * 12 2 1 14 14 C 1.52928 * 110.48252 * 160.92500 * 13 12 2 15 15 C 1.53337 * 108.67411 * 50.75366 * 14 13 12 16 16 C 1.52999 * 109.67676 * 52.20122 * 15 14 13 17 17 C 1.53006 * 109.67258 * 172.73439 * 15 14 13 18 18 C 1.53068 * 108.42642 * 292.46881 * 15 14 13 19 19 C 1.33349 * 117.94751 * 299.73689 * 12 2 1 20 20 O 1.21277 * 118.24604 * 2.22774 * 19 12 2 21 21 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 22 22 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47060 * 300.00030 * 1 2 3 24 24 H 0.97003 * 119.99339 * 179.97438 * 7 6 4 25 25 H 1.08992 * 109.30234 * 281.23570 * 13 12 2 26 26 H 1.08999 * 109.30004 * 40.82189 * 13 12 2 27 27 H 1.08998 * 109.59894 * 170.50936 * 14 13 12 28 28 H 1.09001 * 109.60357 * 290.83133 * 14 13 12 29 29 H 1.08999 * 109.46920 * 59.99753 * 16 15 14 30 30 H 1.08997 * 109.47511 * 179.97438 * 16 15 14 31 31 H 1.09005 * 109.47350 * 299.99888 * 16 15 14 32 32 H 1.08993 * 109.46955 * 60.00226 * 17 15 14 33 33 H 1.09002 * 109.46718 * 179.97438 * 17 15 14 34 34 H 1.09001 * 109.46751 * 299.99528 * 17 15 14 35 35 H 1.09003 * 109.40100 * 169.03287 * 18 15 14 36 36 H 1.09006 * 109.39743 * 288.85548 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6033 8 14 2.3213 -1.1204 4.0079 9 1 3.8063 -1.1209 4.0082 10 1 1.8269 -0.4199 5.2204 11 1 1.8258 -2.5203 4.0078 12 7 2.0184 -0.6907 -1.1962 13 6 2.8530 0.0604 -2.1256 14 6 3.6413 -0.8916 -3.0261 15 6 2.6685 -1.9062 -3.6389 16 6 1.5027 -1.1678 -4.2996 17 6 3.3988 -2.7550 -4.6817 18 6 2.1401 -2.8068 -2.5197 19 6 1.6758 -1.9685 -1.3637 20 8 0.9460 -2.4796 -0.5409 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 0.7090 1.1613 3.4844 25 1 2.2208 0.6990 -2.7423 26 1 3.5512 0.6801 -1.5628 27 1 4.1273 -0.3251 -3.8204 28 1 4.3944 -1.4138 -2.4360 29 1 1.8844 -0.5138 -5.0836 30 1 0.8136 -1.8919 -4.7344 31 1 0.9796 -0.5716 -3.5519 32 1 4.2226 -3.2863 -4.2053 33 1 2.7045 -3.4751 -5.1147 34 1 3.7893 -2.1084 -5.4676 35 1 1.3080 -3.4018 -2.8962 36 1 2.9365 -3.4704 -2.1826 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261097673.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:29 Heat of formation + Delta-G solvation = -64.920712 kcal Electronic energy + Delta-G solvation = -16738.516124 eV Core-core repulsion = 14221.443222 eV Total energy + Delta-G solvation = -2517.072901 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.55759 -38.21756 -36.67555 -34.59413 -31.68525 -30.32916 -28.36457 -28.09296 -27.25450 -24.63661 -23.22476 -20.96138 -18.70678 -18.34892 -17.52465 -16.92220 -16.36263 -16.04546 -15.68743 -15.15214 -14.54298 -14.48696 -14.16063 -13.71759 -13.42188 -13.19640 -12.96900 -12.87309 -12.75282 -12.64950 -12.45936 -12.29549 -12.20248 -11.95785 -11.82645 -11.48458 -11.32858 -11.13584 -10.58167 -10.02182 -9.25189 -8.12269 -6.21864 1.34448 1.38938 1.45813 2.04121 2.37664 2.56792 3.14750 3.73016 3.79993 3.83441 3.98861 4.41874 4.43095 4.60685 4.72966 4.73865 4.83922 4.84424 4.93640 4.95859 5.01395 5.08117 5.09709 5.16724 5.25068 5.31939 5.34682 5.46732 5.55799 5.62500 5.87438 6.09187 6.22569 6.76952 7.07161 7.40136 7.71627 8.91676 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.042202 B = 0.008401 C = 0.008093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.320917 B = 3332.132037 C = 3458.873886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.268 3.732 3 H 0.028 0.972 4 C -0.510 4.510 5 H 0.035 0.965 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.954 3.046 9 H -0.267 1.267 10 H -0.275 1.275 11 H -0.286 1.286 12 N -0.593 5.593 13 C 0.105 3.895 14 C -0.116 4.116 15 C -0.062 4.062 16 C -0.143 4.143 17 C -0.131 4.131 18 C -0.118 4.118 19 C 0.496 3.504 20 O -0.596 6.596 21 H 0.021 0.979 22 H 0.036 0.964 23 H 0.063 0.937 24 H 0.263 0.737 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.113 0.887 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.033 0.967 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.342 -2.697 -15.779 17.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.166 3.834 3 H 0.046 0.954 4 C -0.549 4.549 5 H 0.054 0.946 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.780 3.220 9 H -0.192 1.192 10 H -0.200 1.200 11 H -0.213 1.213 12 N -0.324 5.324 13 C -0.017 4.017 14 C -0.153 4.153 15 C -0.062 4.062 16 C -0.200 4.200 17 C -0.188 4.188 18 C -0.158 4.158 19 C 0.285 3.715 20 O -0.478 6.478 21 H 0.040 0.960 22 H 0.055 0.945 23 H 0.082 0.918 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.131 0.869 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.917 -2.819 -15.252 16.601 hybrid contribution -0.098 -0.276 1.405 1.435 sum 5.820 -3.095 -13.846 15.335 Atomic orbital electron populations 1.21941 0.98654 0.99993 0.99299 1.18525 0.91233 0.91394 0.82265 0.95441 1.21371 1.30445 1.11272 0.91778 0.94631 1.25578 0.95627 0.95920 1.01511 1.69962 1.37816 1.24015 1.24134 0.85673 0.78928 0.78254 0.79110 1.19225 1.20030 1.21251 1.47676 1.49801 1.11223 1.23709 1.21587 0.93621 0.95066 0.91467 1.21962 0.97183 0.97111 0.99081 1.20652 0.96027 0.95158 0.94384 1.21935 0.97320 1.00458 1.00304 1.21782 0.99935 0.99452 0.97613 1.21808 1.02896 0.97962 0.93138 1.20696 0.80731 0.82437 0.87633 1.90643 1.39327 1.71315 1.46503 0.96047 0.94541 0.91846 0.92790 0.91138 0.91685 0.86862 0.91628 0.90016 0.92149 0.94766 0.92176 0.91907 0.90473 0.88650 0.88453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.65 8.86 71.98 0.64 -7.01 16 2 C 0.27 14.32 2.60 44.25 0.11 14.43 16 3 H 0.03 1.52 7.79 -2.39 -0.02 1.50 16 4 C -0.51 -30.38 7.42 25.60 0.19 -30.19 16 5 H 0.04 2.20 7.40 -2.91 -0.02 2.18 16 6 C 0.01 0.69 5.30 84.66 0.45 1.14 16 7 N -0.92 -55.02 11.32 21.45 0.24 -54.77 16 8 Si 0.95 47.09 29.54 68.60 2.03 49.12 16 9 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 12 N -0.59 -25.67 2.57 -806.81 -2.07 -27.75 16 13 C 0.10 3.30 5.47 86.50 0.47 3.77 16 14 C -0.12 -2.62 4.95 30.68 0.15 -2.47 16 15 C -0.06 -1.36 0.79 -52.04 -0.04 -1.40 16 16 C -0.14 -3.10 7.81 71.98 0.56 -2.53 16 17 C -0.13 -1.98 8.49 71.98 0.61 -1.37 16 18 C -0.12 -3.59 4.79 29.70 0.14 -3.45 16 19 C 0.50 21.78 6.16 87.71 0.54 22.32 16 20 O -0.60 -32.84 13.40 -3.02 -0.04 -32.88 16 21 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 22 H 0.04 2.11 5.86 -2.39 -0.01 2.10 16 23 H 0.06 3.72 6.07 -2.39 -0.01 3.71 16 24 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 25 H 0.07 2.00 6.87 -2.39 -0.02 1.98 16 26 H 0.06 2.09 8.04 -2.39 -0.02 2.07 16 27 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.06 1.57 8.13 -2.39 -0.02 1.55 16 29 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.03 0.95 5.92 -2.38 -0.01 0.93 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.10 2.75 8.11 -2.39 -0.02 2.73 16 36 H 0.10 2.77 8.10 -2.38 -0.02 2.75 16 Total: -1.00 -72.37 278.38 5.02 -67.35 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: 1.04 Total: 5.70 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 3.83 Total: -6.76 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -1.83 Total: -82.52 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -0.04 Total: -32.88 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -72.37 5.02 -67.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261097673.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.427 kcal (2) G-P(sol) polarization free energy of solvation -72.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds