Wall clock time and date at job start Mon Mar 30 2020 03:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21286 * 119.99473 * 2 1 4 4 N 1.34775 * 120.00151 * 180.02562 * 2 1 3 5 5 C 1.46503 * 119.99738 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46733 * 179.97438 * 5 4 2 7 7 H 1.08998 * 109.47385 * 304.99759 * 6 5 4 8 8 C 1.52995 * 109.47124 * 65.00097 * 6 5 4 9 9 C 1.53003 * 109.47306 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47177 * 300.00242 * 9 8 6 11 11 C 1.53000 * 109.46922 * 59.99864 * 10 9 8 12 12 H 1.09007 * 109.46721 * 180.02562 * 11 10 9 13 13 C 1.50694 * 109.47355 * 59.99916 * 11 10 9 14 14 H 1.08000 * 120.00563 * 239.99848 * 13 11 10 15 15 C 1.37885 * 119.99902 * 60.00012 * 13 11 10 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.53000 * 109.46989 * 185.00113 * 6 5 4 22 22 H 1.09001 * 109.46473 * 239.99561 * 1 2 3 23 23 H 1.08995 * 109.47258 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.46813 * 120.00033 * 1 2 3 25 25 H 0.96994 * 119.99705 * 359.97438 * 4 2 1 26 26 H 1.09003 * 109.47149 * 60.00213 * 5 4 2 27 27 H 1.08996 * 109.47218 * 299.99469 * 5 4 2 28 28 H 1.09002 * 109.47384 * 299.99921 * 8 6 5 29 29 H 1.09007 * 109.47390 * 59.99827 * 8 6 5 30 30 H 1.08998 * 109.47015 * 60.00334 * 9 8 6 31 31 H 1.09000 * 109.47521 * 179.97438 * 9 8 6 32 32 H 1.08998 * 109.47223 * 299.99965 * 10 9 8 33 33 H 1.08995 * 109.47095 * 179.97438 * 10 9 8 34 34 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 35 35 H 1.08998 * 109.47339 * 60.00297 * 21 6 5 36 36 H 1.08998 * 109.47223 * 300.00302 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.6460 -1.1671 -0.0011 6 6 4.1560 -2.6096 -0.0010 7 1 3.7218 -3.1484 0.8411 8 6 3.7508 -3.2939 -1.3080 9 6 4.2613 -4.7362 -1.3082 10 6 5.7862 -4.7375 -1.1833 11 6 6.1914 -4.0532 0.1238 12 1 7.2778 -4.0537 0.2126 13 6 5.5914 -4.7985 1.2880 14 1 4.9137 -4.2940 1.9608 15 6 5.9076 -6.1246 1.4944 16 7 6.7325 -6.7391 0.6749 17 14 5.1644 -7.0482 2.9380 18 1 5.6594 -8.4484 2.9375 19 1 5.5583 -6.3840 4.2063 20 1 3.6844 -7.0469 2.8174 21 6 5.6809 -2.6113 0.1242 22 1 -0.3632 -0.5139 0.8900 23 1 -0.3633 1.0276 0.0005 24 1 -0.3633 -0.5138 -0.8900 25 1 1.6960 -2.0072 -0.0005 26 1 4.0096 -0.6534 0.8889 27 1 4.0089 -0.6531 -0.8911 28 1 2.6644 -3.2926 -1.3972 29 1 4.1851 -2.7550 -2.1501 30 1 3.8273 -5.2753 -0.4661 31 1 3.9722 -5.2239 -2.2391 32 1 6.2202 -4.1983 -2.0253 33 1 6.1499 -5.7650 -1.1829 34 1 6.9552 -7.6720 0.8203 35 1 5.9696 -2.1239 1.0554 36 1 6.1152 -2.0724 -0.7178 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261103111.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:53 Heat of formation + Delta-G solvation = -73.126571 kcal Electronic energy + Delta-G solvation = -16033.156156 eV Core-core repulsion = 13515.727422 eV Total energy + Delta-G solvation = -2517.428734 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.52280 -37.91661 -34.62329 -32.51578 -30.87492 -29.81779 -29.03566 -24.96412 -24.69889 -21.43413 -20.36756 -20.31688 -18.68643 -16.72470 -15.88745 -15.62336 -15.36958 -14.59412 -14.32756 -13.67929 -13.33343 -13.06528 -12.82921 -12.60492 -12.52598 -11.97269 -11.60795 -11.21987 -11.07516 -10.89223 -10.81000 -10.62259 -10.13129 -10.10619 -9.79561 -9.60219 -9.11889 -8.93460 -8.82647 -8.62020 -8.24694 -5.96853 -4.01636 2.74684 3.29495 3.35457 3.37423 3.43953 4.43315 4.87486 5.18311 5.28049 5.32647 5.34836 5.47236 5.59491 5.74053 5.97708 6.08465 6.17826 6.35026 6.45885 6.52579 6.57063 6.67357 6.76378 6.80334 6.84933 7.08535 7.18508 7.47578 7.57639 7.67017 7.74766 7.94217 8.17243 8.34801 8.48260 9.00613 9.61477 11.08883 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.033698 B = 0.006975 C = 0.006447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.706684 B = 4013.457948 C = 4341.995058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.504 3.496 3 O -0.556 6.556 4 N -0.724 5.724 5 C 0.119 3.881 6 C -0.089 4.089 7 H 0.085 0.915 8 C -0.103 4.103 9 C -0.103 4.103 10 C -0.109 4.109 11 C 0.045 3.955 12 H 0.025 0.975 13 C -0.503 4.503 14 H 0.054 0.946 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.884 3.116 18 H -0.289 1.289 19 H -0.279 1.279 20 H -0.279 1.279 21 C -0.097 4.097 22 H 0.086 0.914 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.401 0.599 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.041 0.959 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.031 0.969 32 H 0.013 0.987 33 H 0.089 0.911 34 H 0.259 0.741 35 H 0.048 0.952 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.906 6.227 -2.669 12.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.291 3.709 3 O -0.435 6.435 4 N -0.376 5.376 5 C -0.004 4.004 6 C -0.108 4.108 7 H 0.103 0.897 8 C -0.141 4.141 9 C -0.140 4.140 10 C -0.147 4.147 11 C 0.027 3.973 12 H 0.043 0.957 13 C -0.541 4.541 14 H 0.072 0.928 15 C -0.139 4.139 16 N -0.529 5.529 17 Si 0.712 3.288 18 H -0.214 1.214 19 H -0.204 1.204 20 H -0.204 1.204 21 C -0.135 4.135 22 H 0.105 0.895 23 H 0.107 0.893 24 H 0.104 0.896 25 H 0.236 0.764 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.032 0.968 33 H 0.107 0.893 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.372 6.799 -2.697 11.888 hybrid contribution -0.643 -1.061 0.795 1.473 sum -10.015 5.739 -1.902 11.698 Atomic orbital electron populations 1.21915 0.92223 1.05138 1.04130 1.20781 0.90488 0.83725 0.75920 1.90702 1.71014 1.31561 1.50220 1.46187 1.08297 1.08480 1.74636 1.21627 0.78442 0.98807 1.01541 1.21348 0.98149 0.92055 0.99198 0.89694 1.21514 0.98264 0.97717 0.96592 1.21370 0.98540 0.94379 0.99758 1.21516 0.93287 1.03528 0.96361 1.18660 0.96027 0.88961 0.93685 0.95669 1.21105 1.27113 0.95369 1.10500 0.92801 1.24938 0.95212 0.97750 0.96027 1.69862 1.34957 1.11251 1.36870 0.86790 0.79482 0.79012 0.83470 1.21427 1.20431 1.20442 1.21511 0.92678 1.00190 0.99125 0.89538 0.89294 0.89574 0.76434 0.91932 0.92108 0.94055 0.93377 0.91194 0.95014 0.96842 0.89260 0.93100 0.93368 0.94487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 10.32 36.01 0.37 -1.17 16 2 C 0.50 6.99 7.94 -10.98 -0.09 6.90 16 3 O -0.56 -10.22 17.09 5.55 0.09 -10.13 16 4 N -0.72 -9.69 5.28 -60.29 -0.32 -10.01 16 5 C 0.12 1.87 5.06 -4.04 -0.02 1.85 16 6 C -0.09 -1.54 2.00 -90.62 -0.18 -1.72 16 7 H 0.08 1.59 6.62 -51.93 -0.34 1.25 16 8 C -0.10 -1.73 5.08 -26.73 -0.14 -1.87 16 9 C -0.10 -2.04 5.70 -26.73 -0.15 -2.20 16 10 C -0.11 -2.47 5.24 -26.73 -0.14 -2.61 16 11 C 0.05 1.07 2.59 -91.80 -0.24 0.83 16 12 H 0.03 0.67 8.14 -51.92 -0.42 0.24 16 13 C -0.50 -12.89 6.61 -34.44 -0.23 -13.12 16 14 H 0.05 1.36 6.71 -52.49 -0.35 1.01 16 15 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 16 N -0.89 -24.68 11.32 55.43 0.63 -24.05 16 17 Si 0.88 20.63 29.54 -169.99 -5.02 15.61 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 C -0.10 -1.92 4.69 -26.75 -0.13 -2.05 16 22 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.09 0.77 8.12 -51.93 -0.42 0.35 16 24 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.40 4.47 7.65 -40.82 -0.31 4.16 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.04 0.59 7.18 -51.93 -0.37 0.22 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.52 7.22 -51.93 -0.37 1.15 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 34 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 284.37 15.07 4.29 4.29 Total: -1.00 -29.45 284.37 -7.22 -36.67 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -5.86 Total: 1.24 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -1.03 Total: -13.61 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: 0.31 Total: -34.06 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.45 -7.22 -36.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261103111.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.461 kcal (2) G-P(sol) polarization free energy of solvation -29.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds