Wall clock time and date at job start Mon Mar 30 2020 03:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21286 * 119.99473 * 2 1 4 4 N 1.34775 * 120.00151 * 180.02562 * 2 1 3 5 5 C 1.46503 * 119.99738 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.46733 * 179.97438 * 5 4 2 7 7 H 1.08998 * 109.47385 * 304.99759 * 6 5 4 8 8 C 1.52995 * 109.47124 * 65.00097 * 6 5 4 9 9 C 1.53003 * 109.47306 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47177 * 300.00242 * 9 8 6 11 11 C 1.53000 * 109.46922 * 59.99864 * 10 9 8 12 12 H 1.09007 * 109.46721 * 180.02562 * 11 10 9 13 13 C 1.50694 * 109.47355 * 59.99916 * 11 10 9 14 14 H 1.08000 * 120.00563 * 239.99848 * 13 11 10 15 15 C 1.37885 * 119.99902 * 60.00012 * 13 11 10 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.53000 * 109.46989 * 185.00113 * 6 5 4 22 22 H 1.09001 * 109.46473 * 239.99561 * 1 2 3 23 23 H 1.08995 * 109.47258 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.46813 * 120.00033 * 1 2 3 25 25 H 0.96994 * 119.99705 * 359.97438 * 4 2 1 26 26 H 1.09003 * 109.47149 * 60.00213 * 5 4 2 27 27 H 1.08996 * 109.47218 * 299.99469 * 5 4 2 28 28 H 1.09002 * 109.47384 * 299.99921 * 8 6 5 29 29 H 1.09007 * 109.47390 * 59.99827 * 8 6 5 30 30 H 1.08998 * 109.47015 * 60.00334 * 9 8 6 31 31 H 1.09000 * 109.47521 * 179.97438 * 9 8 6 32 32 H 1.08998 * 109.47223 * 299.99965 * 10 9 8 33 33 H 1.08995 * 109.47095 * 179.97438 * 10 9 8 34 34 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 35 35 H 1.08998 * 109.47339 * 60.00297 * 21 6 5 36 36 H 1.08998 * 109.47223 * 300.00302 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.6460 -1.1671 -0.0011 6 6 4.1560 -2.6096 -0.0010 7 1 3.7218 -3.1484 0.8411 8 6 3.7508 -3.2939 -1.3080 9 6 4.2613 -4.7362 -1.3082 10 6 5.7862 -4.7375 -1.1833 11 6 6.1914 -4.0532 0.1238 12 1 7.2778 -4.0537 0.2126 13 6 5.5914 -4.7985 1.2880 14 1 4.9137 -4.2940 1.9608 15 6 5.9076 -6.1246 1.4944 16 7 6.7325 -6.7391 0.6749 17 14 5.1644 -7.0482 2.9380 18 1 5.6594 -8.4484 2.9375 19 1 5.5583 -6.3840 4.2063 20 1 3.6844 -7.0469 2.8174 21 6 5.6809 -2.6113 0.1242 22 1 -0.3632 -0.5139 0.8900 23 1 -0.3633 1.0276 0.0005 24 1 -0.3633 -0.5138 -0.8900 25 1 1.6960 -2.0072 -0.0005 26 1 4.0096 -0.6534 0.8889 27 1 4.0089 -0.6531 -0.8911 28 1 2.6644 -3.2926 -1.3972 29 1 4.1851 -2.7550 -2.1501 30 1 3.8273 -5.2753 -0.4661 31 1 3.9722 -5.2239 -2.2391 32 1 6.2202 -4.1983 -2.0253 33 1 6.1499 -5.7650 -1.1829 34 1 6.9552 -7.6720 0.8203 35 1 5.9696 -2.1239 1.0554 36 1 6.1152 -2.0724 -0.7178 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261103111.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:52 Heat of formation + Delta-G solvation = -91.585591 kcal Electronic energy + Delta-G solvation = -16033.956599 eV Core-core repulsion = 13515.727422 eV Total energy + Delta-G solvation = -2518.229177 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.72032 -39.45425 -36.02783 -34.29845 -32.22830 -31.46089 -30.16367 -26.88787 -26.09671 -23.03077 -21.88611 -21.48457 -20.42379 -17.87554 -17.59040 -17.05854 -16.50806 -16.42710 -15.81008 -15.09030 -14.69524 -14.67238 -14.38189 -13.88707 -13.38584 -13.34440 -12.97901 -12.89189 -12.69203 -12.63661 -12.44580 -12.38419 -11.89553 -11.65023 -11.37289 -11.01595 -10.81735 -10.68764 -10.44791 -10.20741 -10.02343 -8.00211 -6.10763 1.43759 1.45225 1.51412 1.70353 2.39418 2.47802 3.27930 3.88993 4.01172 4.06410 4.15162 4.56151 4.56492 4.63903 4.71656 4.74530 4.86440 4.92290 4.96180 5.01974 5.07949 5.14216 5.19783 5.26366 5.43388 5.50445 5.58524 5.70733 5.80329 5.81658 6.01298 6.26850 6.48261 6.65272 6.99491 7.31985 7.55261 9.04386 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.033698 B = 0.006975 C = 0.006447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.706684 B = 4013.457948 C = 4341.995058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.499 3.501 3 O -0.608 6.608 4 N -0.717 5.717 5 C 0.130 3.870 6 C -0.076 4.076 7 H 0.073 0.927 8 C -0.096 4.096 9 C -0.097 4.097 10 C -0.107 4.107 11 C 0.039 3.961 12 H -0.015 1.015 13 C -0.505 4.505 14 H 0.056 0.944 15 C 0.013 3.987 16 N -0.920 5.920 17 Si 0.942 3.058 18 H -0.291 1.291 19 H -0.277 1.277 20 H -0.267 1.267 21 C -0.093 4.093 22 H 0.109 0.891 23 H 0.089 0.911 24 H 0.112 0.888 25 H 0.415 0.585 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.022 0.978 33 H 0.054 0.946 34 H 0.256 0.744 35 H 0.043 0.957 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.488 6.657 -2.803 14.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.288 3.712 3 O -0.490 6.490 4 N -0.369 5.369 5 C 0.006 3.994 6 C -0.095 4.095 7 H 0.091 0.909 8 C -0.133 4.133 9 C -0.135 4.135 10 C -0.145 4.145 11 C 0.021 3.979 12 H 0.003 0.997 13 C -0.544 4.544 14 H 0.074 0.926 15 C -0.185 4.185 16 N -0.560 5.560 17 Si 0.768 3.232 18 H -0.217 1.217 19 H -0.203 1.203 20 H -0.192 1.192 21 C -0.132 4.132 22 H 0.128 0.872 23 H 0.108 0.892 24 H 0.131 0.869 25 H 0.252 0.748 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.041 0.959 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.985 7.210 -2.829 14.270 hybrid contribution 0.226 -1.192 0.829 1.470 sum -11.759 6.018 -2.000 13.360 Atomic orbital electron populations 1.21923 0.87870 1.06049 1.06465 1.21701 0.92491 0.82690 0.74295 1.90686 1.72454 1.33320 1.52563 1.46096 1.07212 1.09368 1.74216 1.21297 0.80157 0.97052 1.00873 1.21146 0.95945 0.93146 0.99274 0.90868 1.21460 1.00342 0.95258 0.96266 1.21270 0.95946 0.96582 0.99687 1.21400 0.95767 1.01290 0.96006 1.18655 0.93671 0.91589 0.94006 0.99702 1.21374 1.26639 0.95513 1.10831 0.92583 1.25638 0.95754 0.98774 0.98291 1.70022 1.36328 1.11252 1.38443 0.85865 0.79267 0.77500 0.80536 1.21727 1.20280 1.19199 1.21405 0.94887 0.97420 0.99441 0.87229 0.89204 0.86935 0.74804 0.93164 0.92421 0.90674 0.92554 0.93299 0.93341 0.95903 0.92750 0.93460 0.93858 0.93384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 10.32 71.24 0.74 -1.53 16 2 C 0.50 12.56 7.94 87.66 0.70 13.25 16 3 O -0.61 -21.64 17.09 -3.05 -0.05 -21.69 16 4 N -0.72 -17.07 5.28 -463.04 -2.45 -19.52 16 5 C 0.13 3.86 5.06 86.38 0.44 4.29 16 6 C -0.08 -2.51 2.00 -10.79 -0.02 -2.53 16 7 H 0.07 2.61 6.62 -2.39 -0.02 2.60 16 8 C -0.10 -2.93 5.08 30.59 0.16 -2.78 16 9 C -0.10 -3.71 5.70 30.60 0.17 -3.54 16 10 C -0.11 -4.87 5.24 30.59 0.16 -4.71 16 11 C 0.04 1.90 2.59 -11.56 -0.03 1.87 16 12 H -0.02 -0.84 8.14 -2.38 -0.02 -0.86 16 13 C -0.51 -26.14 6.61 25.60 0.17 -25.97 16 14 H 0.06 2.82 6.71 -2.91 -0.02 2.80 16 15 C 0.01 0.71 5.30 84.66 0.45 1.16 16 16 N -0.92 -52.33 11.32 21.45 0.24 -52.09 16 17 Si 0.94 42.35 29.54 68.60 2.03 44.37 16 18 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 21 C -0.09 -3.67 4.69 30.58 0.14 -3.53 16 22 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.09 1.28 8.12 -2.39 -0.02 1.26 16 24 H 0.11 1.01 8.14 -2.39 -0.02 1.00 16 25 H 0.41 7.62 7.65 -92.71 -0.71 6.91 16 26 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.07 1.83 7.18 -2.39 -0.02 1.82 16 29 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.05 2.07 7.22 -2.39 -0.02 2.05 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.05 2.87 6.07 -2.39 -0.01 2.86 16 34 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 35 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -65.11 284.37 3.18 -61.93 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 0.34 Total: 11.02 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 3.07 Total: -24.02 kcal Atomic # 7 Polarization: -69.40 SS G_CDS: -2.20 Total: -71.61 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.05 Total: -21.69 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Total: -65.11 3.18 -61.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261103111.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.659 kcal (2) G-P(sol) polarization free energy of solvation -65.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds