Wall clock time and date at job start Mon Mar 30 2020 03:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21283 * 120.00363 * 2 1 4 4 N 1.34784 * 119.99988 * 180.02562 * 2 1 3 5 5 C 1.46493 * 119.99864 * 179.72721 * 4 2 1 6 6 C 1.53001 * 109.47084 * 180.02562 * 5 4 2 7 7 H 1.08999 * 109.47100 * 54.99323 * 6 5 4 8 8 C 1.53007 * 109.46806 * 294.99611 * 6 5 4 9 9 C 1.53001 * 109.46806 * 179.97438 * 8 6 5 10 10 C 1.52992 * 109.47193 * 60.00386 * 9 8 6 11 11 C 1.52999 * 109.47013 * 299.99726 * 10 9 8 12 12 H 1.09000 * 109.47027 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47062 * 300.00067 * 11 10 9 14 14 H 1.08001 * 120.00357 * 120.00160 * 13 11 10 15 15 C 1.37879 * 120.00506 * 300.00135 * 13 11 10 16 16 N 1.31510 * 120.00832 * 180.02562 * 15 13 11 17 17 Si 1.86811 * 119.99545 * 0.02562 * 15 13 11 18 18 H 1.48491 * 109.47235 * 89.99989 * 17 15 13 19 19 H 1.48499 * 109.47028 * 210.00181 * 17 15 13 20 20 H 1.48496 * 109.46769 * 329.99720 * 17 15 13 21 21 C 1.52992 * 109.47285 * 59.99996 * 11 10 9 22 22 H 1.09002 * 109.47054 * 240.00095 * 1 2 3 23 23 H 1.09005 * 109.47144 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47224 * 119.99583 * 1 2 3 25 25 H 0.97000 * 119.99339 * 0.02562 * 4 2 1 26 26 H 1.09007 * 109.47196 * 299.99538 * 5 4 2 27 27 H 1.09006 * 109.47678 * 59.99732 * 5 4 2 28 28 H 1.08999 * 109.47056 * 299.99739 * 8 6 5 29 29 H 1.08995 * 109.47177 * 60.00033 * 8 6 5 30 30 H 1.09001 * 109.46447 * 180.02562 * 9 8 6 31 31 H 1.08999 * 109.47100 * 299.99712 * 9 8 6 32 32 H 1.08999 * 109.47648 * 59.99661 * 10 9 8 33 33 H 1.09006 * 109.47175 * 180.02562 * 10 9 8 34 34 H 0.96994 * 120.00289 * 179.97438 * 16 15 13 35 35 H 1.09003 * 109.47316 * 180.02562 * 21 11 10 36 36 H 1.09001 * 109.47332 * 60.00321 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.6458 -1.1672 -0.0066 6 6 4.1558 -2.6097 -0.0065 7 1 3.7176 -3.1501 -0.8457 8 6 3.7565 -3.2918 1.3036 9 6 4.2660 -4.7345 1.3034 10 6 5.7901 -4.7371 1.1711 11 6 6.1895 -4.0550 -0.1390 12 1 7.2754 -4.0573 -0.2334 13 6 5.5832 -4.8017 -1.2991 14 1 4.9027 -4.2977 -1.9694 15 6 5.8974 -6.1283 -1.5051 16 7 5.3688 -6.7799 -2.5178 17 14 7.0740 -7.0004 -0.3454 18 1 6.3076 -7.6122 0.7696 19 1 7.8031 -8.0614 -1.0856 20 1 8.0468 -6.0208 0.2015 21 6 5.6800 -2.6124 -0.1388 22 1 -0.3633 -0.5138 0.8900 23 1 -0.3634 1.0277 0.0005 24 1 -0.3633 -0.5138 -0.8900 25 1 1.6958 -2.0073 -0.0013 26 1 4.0055 -0.6552 -0.8991 27 1 4.0129 -0.6516 0.8809 28 1 4.1946 -2.7515 2.1428 29 1 2.6706 -3.2903 1.3977 30 1 3.9811 -5.2204 2.2366 31 1 3.8274 -5.2745 0.4643 32 1 6.2287 -4.1970 2.0102 33 1 6.1531 -5.7649 1.1705 34 1 5.5901 -7.7130 -2.6628 35 1 5.9642 -2.1266 -1.0724 36 1 6.1185 -2.0723 0.7003 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261103113.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:56 Heat of formation + Delta-G solvation = -65.365172 kcal Electronic energy + Delta-G solvation = -16070.835367 eV Core-core repulsion = 13553.743192 eV Total energy + Delta-G solvation = -2517.092175 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.55667 -38.13832 -34.70664 -32.46682 -31.14955 -30.13635 -29.34485 -25.03401 -24.82098 -21.54831 -20.56542 -20.37554 -18.73241 -16.77158 -16.09783 -15.84981 -15.39543 -14.95033 -14.27853 -13.75028 -13.49828 -13.25896 -12.86860 -12.65650 -12.43076 -12.32019 -11.95839 -11.61078 -11.44464 -11.13332 -10.76067 -10.35863 -10.18464 -9.96555 -9.87477 -9.73045 -9.27216 -9.03856 -8.85634 -8.78833 -8.50595 -6.06775 -4.03949 2.74358 3.26717 3.38309 3.39914 3.42893 4.41769 4.87475 5.16400 5.23741 5.25807 5.30776 5.39180 5.46614 5.73642 5.87029 5.90037 6.06931 6.18500 6.23837 6.31155 6.32031 6.40920 6.51210 6.62002 6.62821 6.78377 6.97063 7.09718 7.22652 7.26959 7.47010 7.66311 7.81472 8.34130 8.53227 8.96725 9.57022 11.06201 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.045202 B = 0.006655 C = 0.006475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.296617 B = 4206.386308 C = 4323.235398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.505 3.495 3 O -0.557 6.557 4 N -0.725 5.725 5 C 0.120 3.880 6 C -0.092 4.092 7 H 0.092 0.908 8 C -0.101 4.101 9 C -0.108 4.108 10 C -0.118 4.118 11 C 0.008 3.992 12 H 0.027 0.973 13 C -0.502 4.502 14 H 0.075 0.925 15 C 0.069 3.931 16 N -0.904 5.904 17 Si 0.885 3.115 18 H -0.280 1.280 19 H -0.300 1.300 20 H -0.268 1.268 21 C -0.087 4.087 22 H 0.085 0.915 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.402 0.598 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.034 0.966 33 H 0.043 0.957 34 H 0.262 0.738 35 H 0.055 0.945 36 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.118 7.059 7.069 12.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.292 3.708 3 O -0.435 6.435 4 N -0.376 5.376 5 C -0.003 4.003 6 C -0.111 4.111 7 H 0.110 0.890 8 C -0.139 4.139 9 C -0.145 4.145 10 C -0.155 4.155 11 C -0.011 4.011 12 H 0.045 0.955 13 C -0.540 4.540 14 H 0.093 0.907 15 C -0.132 4.132 16 N -0.542 5.542 17 Si 0.716 3.284 18 H -0.207 1.207 19 H -0.228 1.228 20 H -0.193 1.193 21 C -0.125 4.125 22 H 0.104 0.896 23 H 0.107 0.893 24 H 0.106 0.894 25 H 0.237 0.763 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.682 7.646 6.974 12.318 hybrid contribution 0.387 -1.164 0.594 1.363 sum -6.294 6.481 7.568 11.786 Atomic orbital electron populations 1.21915 0.92169 1.05154 1.04185 1.20781 0.90508 0.83685 0.75856 1.90700 1.71010 1.31579 1.50226 1.46172 1.08207 1.08553 1.74689 1.21581 0.78621 0.98497 1.01609 1.21380 0.97864 0.92463 0.99375 0.88994 1.21468 0.98832 0.96837 0.96760 1.21378 0.96712 0.95683 1.00736 1.21839 0.95684 0.99392 0.98599 1.19186 0.96310 0.92038 0.93544 0.95512 1.21003 1.27570 0.95307 1.10138 0.90721 1.24998 0.95600 0.97558 0.95052 1.69893 1.44373 1.10375 1.29583 0.86881 0.81804 0.79229 0.80478 1.20739 1.22792 1.19279 1.21310 0.93006 0.98420 0.99730 0.89584 0.89291 0.89442 0.76349 0.91800 0.92107 0.93189 0.93435 0.94362 0.90087 0.94708 0.93909 0.92816 0.92607 0.94193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 10.32 36.00 0.37 -1.17 16 2 C 0.50 6.92 7.94 -10.98 -0.09 6.84 16 3 O -0.56 -10.12 17.09 5.56 0.09 -10.02 16 4 N -0.72 -9.53 5.28 -60.29 -0.32 -9.85 16 5 C 0.12 1.83 5.07 -4.04 -0.02 1.81 16 6 C -0.09 -1.54 2.00 -90.62 -0.18 -1.72 16 7 H 0.09 1.74 6.62 -51.93 -0.34 1.40 16 8 C -0.10 -1.60 5.08 -26.73 -0.14 -1.73 16 9 C -0.11 -2.00 5.70 -26.73 -0.15 -2.16 16 10 C -0.12 -2.43 4.94 -26.74 -0.13 -2.56 16 11 C 0.01 0.18 2.18 -91.78 -0.20 -0.02 16 12 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 13 C -0.50 -13.13 7.19 -34.44 -0.25 -13.38 16 14 H 0.07 2.10 6.95 -52.49 -0.36 1.74 16 15 C 0.07 1.90 5.45 -17.82 -0.10 1.81 16 16 N -0.90 -26.76 13.96 55.43 0.77 -25.98 16 17 Si 0.89 21.60 24.37 -169.99 -4.14 17.46 16 18 H -0.28 -6.68 6.87 56.52 0.39 -6.29 16 19 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 20 H -0.27 -6.31 6.53 56.52 0.37 -5.94 16 21 C -0.09 -1.62 4.69 -26.74 -0.13 -1.75 16 22 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.09 0.77 8.12 -51.93 -0.42 0.35 16 24 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.40 4.43 7.66 -40.82 -0.31 4.12 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.65 7.19 -51.93 -0.37 0.27 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.72 7.22 -51.93 -0.37 1.34 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.04 0.95 3.27 -51.93 -0.17 0.78 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 277.56 15.07 4.18 4.18 Total: -1.00 -30.93 277.56 -6.14 -37.07 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -5.72 Total: 1.19 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -1.01 Total: -14.04 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.46 Total: -35.83 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.14 Total: 17.46 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.93 -6.14 -37.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261103113.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.299 kcal (2) G-P(sol) polarization free energy of solvation -30.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds