Wall clock time and date at job start Mon Mar 30 2020 03:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21283 * 120.00363 * 2 1 4 4 N 1.34784 * 119.99988 * 180.02562 * 2 1 3 5 5 C 1.46493 * 119.99864 * 179.72721 * 4 2 1 6 6 C 1.53001 * 109.47084 * 180.02562 * 5 4 2 7 7 H 1.08999 * 109.47100 * 54.99323 * 6 5 4 8 8 C 1.53007 * 109.46806 * 294.99611 * 6 5 4 9 9 C 1.53001 * 109.46806 * 179.97438 * 8 6 5 10 10 C 1.52992 * 109.47193 * 60.00386 * 9 8 6 11 11 C 1.52999 * 109.47013 * 299.99726 * 10 9 8 12 12 H 1.09000 * 109.47027 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47062 * 300.00067 * 11 10 9 14 14 H 1.08001 * 120.00357 * 120.00160 * 13 11 10 15 15 C 1.37879 * 120.00506 * 300.00135 * 13 11 10 16 16 N 1.31510 * 120.00832 * 180.02562 * 15 13 11 17 17 Si 1.86811 * 119.99545 * 0.02562 * 15 13 11 18 18 H 1.48491 * 109.47235 * 89.99989 * 17 15 13 19 19 H 1.48499 * 109.47028 * 210.00181 * 17 15 13 20 20 H 1.48496 * 109.46769 * 329.99720 * 17 15 13 21 21 C 1.52992 * 109.47285 * 59.99996 * 11 10 9 22 22 H 1.09002 * 109.47054 * 240.00095 * 1 2 3 23 23 H 1.09005 * 109.47144 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47224 * 119.99583 * 1 2 3 25 25 H 0.97000 * 119.99339 * 0.02562 * 4 2 1 26 26 H 1.09007 * 109.47196 * 299.99538 * 5 4 2 27 27 H 1.09006 * 109.47678 * 59.99732 * 5 4 2 28 28 H 1.08999 * 109.47056 * 299.99739 * 8 6 5 29 29 H 1.08995 * 109.47177 * 60.00033 * 8 6 5 30 30 H 1.09001 * 109.46447 * 180.02562 * 9 8 6 31 31 H 1.08999 * 109.47100 * 299.99712 * 9 8 6 32 32 H 1.08999 * 109.47648 * 59.99661 * 10 9 8 33 33 H 1.09006 * 109.47175 * 180.02562 * 10 9 8 34 34 H 0.96994 * 120.00289 * 179.97438 * 16 15 13 35 35 H 1.09003 * 109.47316 * 180.02562 * 21 11 10 36 36 H 1.09001 * 109.47332 * 60.00321 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.6458 -1.1672 -0.0066 6 6 4.1558 -2.6097 -0.0065 7 1 3.7176 -3.1501 -0.8457 8 6 3.7565 -3.2918 1.3036 9 6 4.2660 -4.7345 1.3034 10 6 5.7901 -4.7371 1.1711 11 6 6.1895 -4.0550 -0.1390 12 1 7.2754 -4.0573 -0.2334 13 6 5.5832 -4.8017 -1.2991 14 1 4.9027 -4.2977 -1.9694 15 6 5.8974 -6.1283 -1.5051 16 7 5.3688 -6.7799 -2.5178 17 14 7.0740 -7.0004 -0.3454 18 1 6.3076 -7.6122 0.7696 19 1 7.8031 -8.0614 -1.0856 20 1 8.0468 -6.0208 0.2015 21 6 5.6800 -2.6124 -0.1388 22 1 -0.3633 -0.5138 0.8900 23 1 -0.3634 1.0277 0.0005 24 1 -0.3633 -0.5138 -0.8900 25 1 1.6958 -2.0073 -0.0013 26 1 4.0055 -0.6552 -0.8991 27 1 4.0129 -0.6516 0.8809 28 1 4.1946 -2.7515 2.1428 29 1 2.6706 -3.2903 1.3977 30 1 3.9811 -5.2204 2.2366 31 1 3.8274 -5.2745 0.4643 32 1 6.2287 -4.1970 2.0102 33 1 6.1531 -5.7649 1.1705 34 1 5.5901 -7.7130 -2.6628 35 1 5.9642 -2.1266 -1.0724 36 1 6.1185 -2.0723 0.7003 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261103113.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:56 Heat of formation + Delta-G solvation = -86.797574 kcal Electronic energy + Delta-G solvation = -16071.764746 eV Core-core repulsion = 13553.743192 eV Total energy + Delta-G solvation = -2518.021553 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.75566 -39.59866 -36.06627 -34.35376 -32.51418 -31.75393 -30.34272 -26.77430 -26.31333 -23.06254 -22.02546 -21.51911 -20.44620 -18.16609 -17.71230 -17.11528 -16.66149 -16.51040 -15.84874 -15.22898 -14.95034 -14.68484 -14.40495 -14.06969 -13.78995 -13.42918 -13.11195 -13.02863 -12.92031 -12.69274 -12.43547 -12.04280 -11.74887 -11.65475 -11.57485 -10.99845 -10.92040 -10.71321 -10.56870 -10.49403 -10.03673 -8.21671 -6.20799 1.31983 1.38239 1.47015 1.69195 2.37586 2.38739 3.15309 3.83371 3.97515 4.01684 4.06952 4.43571 4.46545 4.57456 4.61905 4.70299 4.77735 4.81027 4.86218 4.88214 4.93762 5.01590 5.12074 5.13767 5.27615 5.40588 5.51102 5.56786 5.62996 5.68329 5.77863 5.89142 6.41944 6.63434 6.84672 7.30218 7.42914 8.94677 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.045202 B = 0.006655 C = 0.006475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.296617 B = 4206.386308 C = 4323.235398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.500 3.500 3 O -0.607 6.607 4 N -0.718 5.718 5 C 0.131 3.869 6 C -0.082 4.082 7 H 0.063 0.937 8 C -0.095 4.095 9 C -0.107 4.107 10 C -0.121 4.121 11 C 0.003 3.997 12 H 0.017 0.983 13 C -0.489 4.489 14 H 0.041 0.959 15 C 0.013 3.987 16 N -0.953 5.953 17 Si 0.940 3.060 18 H -0.269 1.269 19 H -0.308 1.308 20 H -0.253 1.253 21 C -0.086 4.086 22 H 0.113 0.887 23 H 0.090 0.910 24 H 0.107 0.893 25 H 0.414 0.586 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.064 0.936 33 H 0.026 0.974 34 H 0.261 0.739 35 H 0.044 0.956 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.829 7.684 9.521 14.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.289 3.711 3 O -0.489 6.489 4 N -0.370 5.370 5 C 0.006 3.994 6 C -0.101 4.101 7 H 0.081 0.919 8 C -0.132 4.132 9 C -0.144 4.144 10 C -0.158 4.158 11 C -0.016 4.016 12 H 0.035 0.965 13 C -0.527 4.527 14 H 0.059 0.941 15 C -0.183 4.183 16 N -0.594 5.594 17 Si 0.769 3.231 18 H -0.195 1.195 19 H -0.237 1.237 20 H -0.177 1.177 21 C -0.125 4.125 22 H 0.131 0.869 23 H 0.109 0.891 24 H 0.125 0.875 25 H 0.251 0.749 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.410 8.263 9.446 14.574 hybrid contribution 0.585 -1.308 -0.233 1.452 sum -6.825 6.955 9.213 13.410 Atomic orbital electron populations 1.21925 0.87981 1.06073 1.06406 1.21674 0.92460 0.82688 0.74292 1.90681 1.72412 1.33259 1.52554 1.46120 1.07350 1.09339 1.74227 1.21300 0.80099 0.96927 1.01028 1.21184 0.96357 0.93282 0.99241 0.91909 1.21438 1.00621 0.94818 0.96324 1.21342 0.95180 0.97438 1.00477 1.21826 0.97313 0.98436 0.98208 1.19209 0.95450 0.93906 0.93062 0.96491 1.21247 1.25868 0.95133 1.10447 0.94123 1.25730 0.97456 0.98599 0.96534 1.70037 1.46739 1.10700 1.31959 0.85969 0.80142 0.78178 0.78770 1.19541 1.23653 1.17684 1.21277 0.94594 0.96230 1.00354 0.86868 0.89112 0.87458 0.74927 0.93479 0.91682 0.91254 0.90823 0.91939 0.93581 0.91713 0.95548 0.93036 0.93746 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 10.32 71.23 0.74 -1.65 16 2 C 0.50 12.75 7.94 87.65 0.70 13.45 16 3 O -0.61 -21.59 17.09 -3.04 -0.05 -21.64 16 4 N -0.72 -17.45 5.28 -463.05 -2.45 -19.89 16 5 C 0.13 3.79 5.07 86.38 0.44 4.23 16 6 C -0.08 -2.63 2.00 -10.79 -0.02 -2.66 16 7 H 0.06 2.40 6.62 -2.39 -0.02 2.39 16 8 C -0.09 -2.67 5.08 30.60 0.16 -2.52 16 9 C -0.11 -3.72 5.70 30.59 0.17 -3.54 16 10 C -0.12 -4.67 4.94 30.59 0.15 -4.52 16 11 C 0.00 0.11 2.18 -11.54 -0.03 0.09 16 12 H 0.02 0.77 7.20 -2.39 -0.02 0.76 16 13 C -0.49 -26.12 7.19 25.60 0.18 -25.93 16 14 H 0.04 2.40 6.95 -2.91 -0.02 2.38 16 15 C 0.01 0.72 5.45 84.66 0.46 1.18 16 16 N -0.95 -58.34 13.96 21.45 0.30 -58.04 16 17 Si 0.94 44.63 24.37 68.60 1.67 46.30 16 18 H -0.27 -12.18 6.87 99.48 0.68 -11.49 16 19 H -0.31 -14.89 7.11 99.48 0.71 -14.18 16 20 H -0.25 -11.24 6.53 99.48 0.65 -10.59 16 21 C -0.09 -3.13 4.69 30.59 0.14 -2.99 16 22 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.09 1.33 8.12 -2.38 -0.02 1.31 16 24 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.41 8.06 7.66 -92.71 -0.71 7.35 16 26 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 28 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.07 1.72 7.19 -2.39 -0.02 1.70 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16 31 H 0.05 1.92 7.22 -2.39 -0.02 1.90 16 32 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.03 1.11 3.27 -2.38 -0.01 1.10 16 34 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 35 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -68.95 277.56 2.83 -66.11 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.27 Total: 12.01 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: 3.09 Total: -24.86 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -2.15 Total: -77.93 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.05 Total: -21.64 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.67 Total: 46.30 kcal Total: -68.95 2.83 -66.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261103113.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.684 kcal (2) G-P(sol) polarization free energy of solvation -68.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds