Wall clock time and date at job start Mon Mar 30 2020 03:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.21283 * 120.00382 * 2 1 4 4 N 1.34784 * 120.00259 * 179.97438 * 2 1 3 5 5 C 1.46992 * 120.60795 * 0.02599 * 4 2 1 6 6 C 1.53196 * 108.73878 * 126.38575 * 5 4 2 7 7 C 1.53039 * 109.33748 * 54.61838 * 6 5 4 8 8 C 1.53042 * 109.54198 * 298.62051 * 7 6 5 9 9 H 1.08998 * 109.49465 * 301.41768 * 8 7 6 10 10 C 1.52996 * 109.50066 * 181.31673 * 8 7 6 11 11 H 1.09000 * 109.46768 * 300.00026 * 10 8 7 12 12 C 1.52993 * 109.47046 * 179.97438 * 10 8 7 13 13 C 1.50702 * 109.47035 * 60.00112 * 10 8 7 14 14 H 1.08001 * 120.00036 * 359.97438 * 13 10 8 15 15 C 1.37872 * 119.99718 * 180.02562 * 13 10 8 16 16 N 1.31506 * 120.00493 * 359.97438 * 15 13 10 17 17 Si 1.86806 * 119.99784 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.47083 * 59.99513 * 17 15 13 19 19 H 1.48499 * 109.47143 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47062 * 299.99468 * 17 15 13 21 21 C 1.46922 * 120.63264 * 179.97438 * 4 2 1 22 22 H 1.08998 * 109.47712 * 240.00168 * 1 2 3 23 23 H 1.09000 * 109.46975 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47360 * 119.99823 * 1 2 3 25 25 H 1.09001 * 109.63362 * 6.59761 * 5 4 2 26 26 H 1.08996 * 109.58160 * 246.14366 * 5 4 2 27 27 H 1.09002 * 109.49815 * 294.65150 * 6 5 4 28 28 H 1.09000 * 109.49595 * 174.58548 * 6 5 4 29 29 H 1.09006 * 109.46255 * 58.64043 * 7 6 5 30 30 H 1.08997 * 109.45914 * 178.59648 * 7 6 5 31 31 H 1.09000 * 109.47379 * 299.99677 * 12 10 8 32 32 H 1.08996 * 109.47749 * 59.99877 * 12 10 8 33 33 H 1.09000 * 109.47135 * 180.02562 * 12 10 8 34 34 H 0.97002 * 120.00377 * 180.02562 * 16 15 13 35 35 H 1.09004 * 109.58306 * 113.84962 * 21 4 2 36 36 H 1.08994 * 109.70589 * 353.48918 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4595 -2.4480 0.0005 6 6 1.9683 -3.2994 -1.1670 7 6 3.4897 -3.4343 -1.0705 8 6 4.1336 -2.0493 -1.1670 9 1 3.8496 -1.5810 -2.1093 10 6 5.6559 -2.1883 -1.1034 11 1 5.9390 -2.6555 -0.1602 12 6 6.2990 -0.8035 -1.2005 13 6 6.1306 -3.0435 -2.2499 14 1 5.4177 -3.4478 -2.9533 15 6 7.4748 -3.3106 -2.4003 16 7 8.3429 -2.8188 -1.5435 17 14 8.0631 -4.3713 -3.8210 18 1 7.6777 -3.7351 -5.1063 19 1 9.5407 -4.5061 -3.7594 20 1 7.4386 -5.7154 -3.7270 21 6 3.6500 -1.1834 0.0000 22 1 -0.3634 -0.5138 0.8900 23 1 -0.3633 1.0277 -0.0005 24 1 -0.3634 -0.5138 -0.8900 25 1 0.3912 -2.2666 -0.1179 26 1 1.6418 -2.9699 0.9399 27 1 1.7047 -2.8193 -2.1094 28 1 1.5118 -4.2882 -1.1222 29 1 3.7540 -3.8920 -0.1172 30 1 3.8511 -4.0605 -1.8862 31 1 6.0159 -0.3368 -2.1440 32 1 5.9557 -0.1845 -0.3716 33 1 7.3835 -0.9025 -1.1557 34 1 9.2886 -3.0064 -1.6495 35 1 4.0111 -1.6020 0.9394 36 1 4.0287 -0.1681 -0.1172 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261262546.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:22 Heat of formation + Delta-G solvation = -77.003158 kcal Electronic energy + Delta-G solvation = -16253.698584 eV Core-core repulsion = 13736.101748 eV Total energy + Delta-G solvation = -2517.596836 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.12869 -38.80020 -36.35463 -34.00307 -32.91699 -31.17544 -29.36340 -27.49116 -25.71102 -24.51065 -22.16754 -20.89710 -19.90471 -18.36224 -18.03063 -16.78603 -16.56532 -16.32843 -15.33091 -15.12585 -14.76752 -14.40998 -14.17242 -13.98598 -13.64203 -13.59266 -13.15765 -12.97995 -12.81202 -12.60992 -12.35332 -12.22842 -12.11993 -11.80266 -11.70619 -11.28388 -11.07499 -10.69615 -10.62361 -10.40782 -9.55426 -8.05953 -6.18942 1.41929 1.43435 1.50534 1.66765 2.13944 2.44936 3.21568 3.71006 3.96865 4.11157 4.16981 4.24641 4.45918 4.49632 4.59566 4.67407 4.71605 4.81470 4.86682 4.93919 4.96053 5.06885 5.16981 5.17776 5.25481 5.38850 5.49991 5.55017 5.63230 5.67240 5.97842 6.12298 6.39684 6.55321 6.91513 7.22229 7.48658 8.98964 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.042576 B = 0.007199 C = 0.006506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.494830 B = 3888.433650 C = 4302.664831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.494 3.506 3 O -0.611 6.611 4 N -0.611 5.611 5 C 0.104 3.896 6 C -0.129 4.129 7 C -0.105 4.105 8 C -0.076 4.076 9 H 0.040 0.960 10 C 0.049 3.951 11 H 0.001 0.999 12 C -0.130 4.130 13 C -0.519 4.519 14 H 0.057 0.943 15 C 0.008 3.992 16 N -0.921 5.921 17 Si 0.952 3.048 18 H -0.275 1.275 19 H -0.288 1.288 20 H -0.267 1.267 21 C 0.119 3.881 22 H 0.117 0.883 23 H 0.089 0.911 24 H 0.112 0.888 25 H 0.123 0.877 26 H 0.081 0.919 27 H 0.059 0.941 28 H 0.101 0.899 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.017 0.983 32 H 0.023 0.977 33 H 0.055 0.945 34 H 0.259 0.741 35 H 0.061 0.939 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.151 -2.081 2.884 17.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.286 3.714 3 O -0.494 6.494 4 N -0.343 5.343 5 C -0.017 4.017 6 C -0.167 4.167 7 C -0.143 4.143 8 C -0.095 4.095 9 H 0.059 0.941 10 C 0.030 3.970 11 H 0.019 0.981 12 C -0.188 4.188 13 C -0.557 4.557 14 H 0.076 0.924 15 C -0.189 4.189 16 N -0.562 5.562 17 Si 0.778 3.222 18 H -0.200 1.200 19 H -0.213 1.213 20 H -0.192 1.192 21 C -0.004 4.004 22 H 0.135 0.865 23 H 0.107 0.893 24 H 0.131 0.869 25 H 0.141 0.859 26 H 0.099 0.901 27 H 0.078 0.922 28 H 0.119 0.881 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.036 0.964 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.674 -1.556 2.931 17.001 hybrid contribution 1.292 -0.276 -0.745 1.517 sum -15.382 -1.832 2.185 15.644 Atomic orbital electron populations 1.21945 0.87353 1.06099 1.06499 1.21889 0.92791 0.82298 0.74469 1.90675 1.72424 1.33193 1.53112 1.48429 1.06519 1.07408 1.71919 1.22106 0.97839 0.82349 0.99392 1.21947 0.94857 1.01324 0.98558 1.21451 0.95338 0.95790 1.01683 1.21330 0.96285 0.95931 0.95978 0.94127 1.18599 0.90148 0.92678 0.95533 0.98127 1.21720 1.02603 0.97590 0.96888 1.21466 0.92267 1.30349 1.11649 0.92445 1.25754 0.97283 0.97359 0.98549 1.70023 1.02140 1.46150 1.37840 0.85711 0.76936 0.79656 0.79939 1.20020 1.21322 1.19211 1.21535 0.80011 1.00363 0.98463 0.86476 0.89258 0.86948 0.85860 0.90075 0.92209 0.88066 0.92703 0.92551 0.96362 0.95830 0.92661 0.93207 0.92091 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 8.67 71.23 0.62 -1.95 16 2 C 0.49 14.79 7.81 87.65 0.68 15.48 16 3 O -0.61 -25.17 16.50 -3.04 -0.05 -25.22 16 4 N -0.61 -17.91 2.97 -818.82 -2.44 -20.35 16 5 C 0.10 2.03 6.34 86.35 0.55 2.58 16 6 C -0.13 -2.96 6.08 30.67 0.19 -2.77 16 7 C -0.10 -3.57 4.94 30.62 0.15 -3.42 16 8 C -0.08 -3.11 1.88 -10.73 -0.02 -3.13 16 9 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 10 C 0.05 2.50 1.90 -11.54 -0.02 2.48 16 11 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 12 C -0.13 -6.75 8.62 71.98 0.62 -6.13 16 13 C -0.52 -28.33 7.82 25.60 0.20 -28.13 16 14 H 0.06 3.04 6.71 -2.91 -0.02 3.02 16 15 C 0.01 0.47 5.30 84.65 0.45 0.92 16 16 N -0.92 -54.24 11.32 21.44 0.24 -53.99 16 17 Si 0.95 43.76 29.54 68.60 2.03 45.79 16 18 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 21 C 0.12 4.51 5.19 86.35 0.45 4.96 16 22 H 0.12 1.17 7.94 -2.39 -0.02 1.15 16 23 H 0.09 1.46 8.12 -2.39 -0.02 1.44 16 24 H 0.11 1.26 7.69 -2.39 -0.02 1.24 16 25 H 0.12 1.37 5.94 -2.39 -0.01 1.36 16 26 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.06 2.13 6.58 -2.39 -0.02 2.11 16 31 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.02 1.10 6.56 -2.39 -0.02 1.09 16 33 H 0.05 3.14 6.07 -2.39 -0.01 3.13 16 34 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 35 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.06 2.66 5.62 -2.39 -0.01 2.65 16 Total: -1.00 -70.44 280.88 4.69 -65.75 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 1.05 Total: 7.14 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: 3.86 Total: -19.11 kcal Atomic # 7 Polarization: -72.15 SS G_CDS: -2.19 Total: -74.34 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.05 Total: -25.22 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -70.44 4.69 -65.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261262546.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.256 kcal (2) G-P(sol) polarization free energy of solvation -70.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds