Wall clock time and date at job start Mon Mar 30 2020 03:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21279 * 120.00086 * 2 1 4 4 N 1.34782 * 119.99723 * 179.97438 * 2 1 3 5 5 C 1.46927 * 120.62699 * 0.02562 * 4 2 1 6 6 C 1.53195 * 108.77285 * 233.58448 * 5 4 2 7 7 C 1.53045 * 109.31269 * 305.36760 * 6 5 4 8 8 C 1.53035 * 109.53751 * 61.36470 * 7 6 5 9 9 H 1.09000 * 109.49813 * 58.62068 * 8 7 6 10 10 C 1.53002 * 109.49707 * 178.68362 * 8 7 6 11 11 H 1.08999 * 109.46716 * 60.00358 * 10 8 7 12 12 C 1.52994 * 109.47008 * 299.99811 * 10 8 7 13 13 C 1.50702 * 109.46787 * 179.97438 * 10 8 7 14 14 H 1.07998 * 120.00174 * 35.10587 * 13 10 8 15 15 C 1.37887 * 119.99826 * 215.09372 * 13 10 8 16 16 N 1.31509 * 119.99633 * 183.15169 * 15 13 10 17 17 Si 1.86795 * 119.99966 * 3.15394 * 15 13 10 18 18 H 1.48496 * 109.47352 * 84.71082 * 17 15 13 19 19 H 1.48495 * 109.47167 * 204.71857 * 17 15 13 20 20 H 1.48510 * 109.47024 * 324.71495 * 17 15 13 21 21 C 1.46916 * 120.63142 * 179.97438 * 4 2 1 22 22 H 1.08989 * 109.47622 * 240.00318 * 1 2 3 23 23 H 1.09002 * 109.46779 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46904 * 119.99918 * 1 2 3 25 25 H 1.08997 * 109.58738 * 113.80213 * 5 4 2 26 26 H 1.08998 * 109.59042 * 353.37086 * 5 4 2 27 27 H 1.09003 * 109.49826 * 185.41912 * 6 5 4 28 28 H 1.09000 * 109.52563 * 65.33637 * 6 5 4 29 29 H 1.09007 * 109.45857 * 301.34430 * 7 6 5 30 30 H 1.08995 * 109.46109 * 181.38712 * 7 6 5 31 31 H 1.09002 * 109.47218 * 66.22700 * 12 10 8 32 32 H 1.09005 * 109.47139 * 186.22251 * 12 10 8 33 33 H 1.08998 * 109.47637 * 306.22303 * 12 10 8 34 34 H 0.97007 * 119.99489 * 180.02562 * 16 15 13 35 35 H 1.09001 * 109.58750 * 6.62070 * 21 4 2 36 36 H 1.08999 * 109.58526 * 246.20316 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.4602 -2.4476 0.0005 6 6 1.9682 -3.2994 1.1681 7 6 3.4897 -3.4344 1.0717 8 6 4.1335 -2.0494 1.1681 9 1 3.8500 -1.5812 2.1107 10 6 5.6559 -2.1885 1.1046 11 1 5.9389 -2.6556 0.1614 12 6 6.1377 -3.0566 2.2687 13 6 6.2892 -0.8243 1.1990 14 1 5.8405 -0.0623 1.8191 15 6 7.4417 -0.5490 0.4938 16 7 8.0287 0.6206 0.6242 17 14 8.1691 -1.8372 -0.6466 18 1 7.5023 -1.7589 -1.9711 19 1 9.6241 -1.5894 -0.8093 20 1 7.9589 -3.1878 -0.0658 21 6 3.6500 -1.1835 0.0000 22 1 -0.3634 -0.5137 0.8899 23 1 -0.3633 1.0277 -0.0005 24 1 -0.3633 -0.5138 -0.8900 25 1 1.6424 -2.9696 -0.9388 26 1 0.3920 -2.2657 0.1186 27 1 1.5117 -4.2881 1.1229 28 1 1.7046 -2.8197 2.1107 29 1 3.7539 -3.8922 0.1184 30 1 3.8511 -4.0605 1.8875 31 1 5.7685 -4.0741 2.1402 32 1 7.2275 -3.0653 2.2887 33 1 5.7603 -2.6490 3.2065 34 1 8.8393 0.8144 0.1278 35 1 4.0267 -0.1675 0.1175 36 1 4.0104 -1.6026 -0.9395 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261262565.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:24 Heat of formation + Delta-G solvation = -57.026214 kcal Electronic energy + Delta-G solvation = -16391.179496 eV Core-core repulsion = 13874.448926 eV Total energy + Delta-G solvation = -2516.730570 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.77667 -37.38221 -34.70626 -32.33583 -31.34644 -30.27098 -28.27245 -25.68057 -24.25416 -22.81873 -21.04391 -18.97871 -18.59910 -16.88188 -16.66387 -15.46572 -15.15366 -14.36360 -14.14734 -13.87914 -13.08942 -12.93390 -12.78383 -12.68346 -12.47595 -12.36569 -12.02207 -11.88046 -11.16056 -10.95846 -10.80399 -10.64548 -10.61512 -10.24297 -10.06157 -9.66357 -9.46443 -9.16641 -8.85384 -8.48377 -8.17470 -6.00164 -3.98656 2.97474 3.31292 3.39469 3.40695 3.41541 4.46796 4.81133 4.94338 5.11455 5.25786 5.28359 5.33856 5.41739 5.56983 5.60758 5.72762 5.87646 6.00747 6.06155 6.23612 6.25180 6.38785 6.44152 6.52817 6.73320 6.80811 6.89239 6.98383 7.11249 7.32645 7.49650 7.81462 7.85129 8.55631 8.59806 9.06205 9.62417 11.13506 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028845 B = 0.009413 C = 0.007925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.468445 B = 2973.907962 C = 3532.416283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.504 3.496 3 O -0.542 6.542 4 N -0.613 5.613 5 C 0.107 3.893 6 C -0.134 4.134 7 C -0.122 4.122 8 C -0.081 4.081 9 H 0.063 0.937 10 C 0.016 3.984 11 H 0.029 0.971 12 C -0.136 4.136 13 C -0.509 4.509 14 H 0.073 0.927 15 C 0.070 3.930 16 N -0.900 5.900 17 Si 0.874 3.126 18 H -0.277 1.277 19 H -0.291 1.291 20 H -0.265 1.265 21 C 0.123 3.877 22 H 0.083 0.917 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.023 0.977 32 H 0.043 0.957 33 H 0.041 0.959 34 H 0.262 0.738 35 H 0.108 0.892 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.389 -9.415 -1.328 17.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.292 3.708 3 O -0.419 6.419 4 N -0.347 5.347 5 C -0.016 4.016 6 C -0.172 4.172 7 C -0.159 4.159 8 C -0.100 4.100 9 H 0.082 0.918 10 C -0.004 4.004 11 H 0.047 0.953 12 C -0.194 4.194 13 C -0.546 4.546 14 H 0.091 0.909 15 C -0.131 4.131 16 N -0.538 5.538 17 Si 0.702 3.298 18 H -0.203 1.203 19 H -0.217 1.217 20 H -0.190 1.190 21 C 0.002 3.998 22 H 0.102 0.898 23 H 0.106 0.894 24 H 0.101 0.899 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.126 0.874 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.904 -8.723 -1.396 16.473 hybrid contribution 0.506 -0.756 -0.629 1.106 sum -13.398 -9.478 -2.025 16.536 Atomic orbital electron populations 1.21926 0.92780 1.04884 1.03538 1.20717 0.90244 0.83503 0.76376 1.90752 1.70626 1.30967 1.49605 1.48343 1.08259 1.05275 1.72848 1.21704 0.96146 0.84848 0.98908 1.21930 0.97619 0.99204 0.98467 1.21741 0.93564 0.98840 1.01780 1.21482 0.97578 0.93016 0.97921 0.91837 1.19130 0.90283 0.96522 0.94453 0.95251 1.22016 1.00460 0.96903 0.99986 1.20986 1.08971 0.96155 1.28537 0.90889 1.25053 0.96514 0.94997 0.96547 1.69913 1.19641 1.22004 1.42229 0.86916 0.78213 0.82906 0.81798 1.20302 1.21735 1.19011 1.21760 0.76075 1.04018 0.97933 0.89791 0.89415 0.89896 0.91714 0.90317 0.91470 0.91757 0.92444 0.91651 0.95835 0.93747 0.93971 0.92778 0.87358 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 8.67 36.01 0.31 -1.56 16 2 C 0.50 8.59 7.81 -10.98 -0.09 8.50 16 3 O -0.54 -12.18 16.50 5.56 0.09 -12.08 16 4 N -0.61 -10.04 2.97 -172.74 -0.51 -10.55 16 5 C 0.11 1.26 6.34 -3.71 -0.02 1.23 16 6 C -0.13 -1.59 6.08 -26.61 -0.16 -1.75 16 7 C -0.12 -1.84 4.85 -26.69 -0.13 -1.97 16 8 C -0.08 -1.56 1.91 -90.48 -0.17 -1.74 16 9 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 10 C 0.02 0.35 1.53 -91.77 -0.14 0.21 16 11 H 0.03 0.68 5.37 -51.93 -0.28 0.40 16 12 C -0.14 -2.82 8.64 37.15 0.32 -2.50 16 13 C -0.51 -14.15 7.72 -34.44 -0.27 -14.41 16 14 H 0.07 2.26 8.06 -52.49 -0.42 1.84 16 15 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 16 N -0.90 -28.00 13.96 55.43 0.77 -27.22 16 17 Si 0.87 21.66 26.94 -169.99 -4.58 17.08 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.27 -6.24 6.89 56.52 0.39 -5.85 16 21 C 0.12 2.48 5.36 -3.69 -0.02 2.46 16 22 H 0.08 0.74 7.69 -51.94 -0.40 0.34 16 23 H 0.09 0.94 8.12 -51.93 -0.42 0.52 16 24 H 0.08 0.71 7.94 -51.93 -0.41 0.29 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.08 0.69 5.93 -51.93 -0.31 0.38 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 30 H 0.06 0.96 6.50 -51.93 -0.34 0.62 16 31 H 0.02 0.41 6.75 -51.93 -0.35 0.06 16 32 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 35 H 0.11 2.66 6.31 -51.93 -0.33 2.33 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 281.96 15.07 4.25 4.25 Total: -1.00 -32.94 281.96 -6.23 -39.17 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -5.79 Total: -1.05 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -0.46 Total: -9.59 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.26 Total: -37.77 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.09 Total: -12.08 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.58 Total: 17.08 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.94 -6.23 -39.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261262565.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.858 kcal (2) G-P(sol) polarization free energy of solvation -32.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds