Wall clock time and date at job start Mon Mar 30 2020 03:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21279 * 120.00086 * 2 1 4 4 N 1.34782 * 119.99723 * 179.97438 * 2 1 3 5 5 C 1.46927 * 120.62699 * 0.02562 * 4 2 1 6 6 C 1.53195 * 108.77285 * 233.58448 * 5 4 2 7 7 C 1.53045 * 109.31269 * 305.36760 * 6 5 4 8 8 C 1.53035 * 109.53751 * 61.36470 * 7 6 5 9 9 H 1.09000 * 109.49813 * 58.62068 * 8 7 6 10 10 C 1.53002 * 109.49707 * 178.68362 * 8 7 6 11 11 H 1.08999 * 109.46716 * 60.00358 * 10 8 7 12 12 C 1.52994 * 109.47008 * 299.99811 * 10 8 7 13 13 C 1.50702 * 109.46787 * 179.97438 * 10 8 7 14 14 H 1.07998 * 120.00174 * 35.10587 * 13 10 8 15 15 C 1.37887 * 119.99826 * 215.09372 * 13 10 8 16 16 N 1.31509 * 119.99633 * 183.15169 * 15 13 10 17 17 Si 1.86795 * 119.99966 * 3.15394 * 15 13 10 18 18 H 1.48496 * 109.47352 * 84.71082 * 17 15 13 19 19 H 1.48495 * 109.47167 * 204.71857 * 17 15 13 20 20 H 1.48510 * 109.47024 * 324.71495 * 17 15 13 21 21 C 1.46916 * 120.63142 * 179.97438 * 4 2 1 22 22 H 1.08989 * 109.47622 * 240.00318 * 1 2 3 23 23 H 1.09002 * 109.46779 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46904 * 119.99918 * 1 2 3 25 25 H 1.08997 * 109.58738 * 113.80213 * 5 4 2 26 26 H 1.08998 * 109.59042 * 353.37086 * 5 4 2 27 27 H 1.09003 * 109.49826 * 185.41912 * 6 5 4 28 28 H 1.09000 * 109.52563 * 65.33637 * 6 5 4 29 29 H 1.09007 * 109.45857 * 301.34430 * 7 6 5 30 30 H 1.08995 * 109.46109 * 181.38712 * 7 6 5 31 31 H 1.09002 * 109.47218 * 66.22700 * 12 10 8 32 32 H 1.09005 * 109.47139 * 186.22251 * 12 10 8 33 33 H 1.08998 * 109.47637 * 306.22303 * 12 10 8 34 34 H 0.97007 * 119.99489 * 180.02562 * 16 15 13 35 35 H 1.09001 * 109.58750 * 6.62070 * 21 4 2 36 36 H 1.08999 * 109.58526 * 246.20316 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.4602 -2.4476 0.0005 6 6 1.9682 -3.2994 1.1681 7 6 3.4897 -3.4344 1.0717 8 6 4.1335 -2.0494 1.1681 9 1 3.8500 -1.5812 2.1107 10 6 5.6559 -2.1885 1.1046 11 1 5.9389 -2.6556 0.1614 12 6 6.1377 -3.0566 2.2687 13 6 6.2892 -0.8243 1.1990 14 1 5.8405 -0.0623 1.8191 15 6 7.4417 -0.5490 0.4938 16 7 8.0287 0.6206 0.6242 17 14 8.1691 -1.8372 -0.6466 18 1 7.5023 -1.7589 -1.9711 19 1 9.6241 -1.5894 -0.8093 20 1 7.9589 -3.1878 -0.0658 21 6 3.6500 -1.1835 0.0000 22 1 -0.3634 -0.5137 0.8899 23 1 -0.3633 1.0277 -0.0005 24 1 -0.3633 -0.5138 -0.8900 25 1 1.6424 -2.9696 -0.9388 26 1 0.3920 -2.2657 0.1186 27 1 1.5117 -4.2881 1.1229 28 1 1.7046 -2.8197 2.1107 29 1 3.7539 -3.8922 0.1184 30 1 3.8511 -4.0605 1.8875 31 1 5.7685 -4.0741 2.1402 32 1 7.2275 -3.0653 2.2887 33 1 5.7603 -2.6490 3.2065 34 1 8.8393 0.8144 0.1278 35 1 4.0267 -0.1675 0.1175 36 1 4.0104 -1.6026 -0.9395 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261262565.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:24 Heat of formation + Delta-G solvation = -80.181307 kcal Electronic energy + Delta-G solvation = -16392.183577 eV Core-core repulsion = 13874.448926 eV Total energy + Delta-G solvation = -2517.734651 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.12036 -38.86051 -36.33434 -34.20184 -32.81844 -31.58133 -29.57057 -27.49509 -25.73564 -24.24337 -22.42123 -20.69026 -19.88235 -18.96479 -17.98235 -16.78704 -16.53251 -16.29369 -15.45898 -15.14905 -14.78114 -14.36903 -14.28970 -14.13218 -13.98556 -13.58719 -13.25560 -12.98845 -12.93942 -12.63117 -12.41743 -12.20969 -11.97243 -11.78584 -11.59691 -11.53712 -11.06472 -10.76676 -10.75032 -10.61668 -9.54038 -8.26277 -6.29050 1.32892 1.34997 1.46225 1.67733 2.16599 2.35687 3.10456 3.72831 3.93070 4.07855 4.12900 4.22267 4.44220 4.46092 4.55731 4.66312 4.67499 4.72756 4.81197 4.95744 4.99272 5.06728 5.06826 5.11557 5.16611 5.24442 5.36841 5.44563 5.62557 5.63473 5.75781 5.79989 6.34501 6.57189 6.77977 7.26135 7.35130 8.92167 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028845 B = 0.009413 C = 0.007925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.468445 B = 2973.907962 C = 3532.416283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.488 3.512 3 O -0.616 6.616 4 N -0.613 5.613 5 C 0.099 3.901 6 C -0.128 4.128 7 C -0.117 4.117 8 C -0.073 4.073 9 H 0.038 0.962 10 C 0.011 3.989 11 H 0.036 0.964 12 C -0.130 4.130 13 C -0.505 4.505 14 H 0.015 0.985 15 C 0.001 3.999 16 N -0.959 5.959 17 Si 0.944 3.056 18 H -0.268 1.268 19 H -0.292 1.292 20 H -0.234 1.234 21 C 0.128 3.872 22 H 0.115 0.885 23 H 0.085 0.915 24 H 0.119 0.881 25 H 0.083 0.917 26 H 0.120 0.880 27 H 0.110 0.890 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.029 0.971 33 H 0.037 0.963 34 H 0.262 0.738 35 H 0.044 0.956 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.994 -13.744 -2.186 21.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.279 3.721 3 O -0.499 6.499 4 N -0.345 5.345 5 C -0.022 4.022 6 C -0.166 4.166 7 C -0.154 4.154 8 C -0.093 4.093 9 H 0.056 0.944 10 C -0.008 4.008 11 H 0.054 0.946 12 C -0.188 4.188 13 C -0.543 4.543 14 H 0.033 0.967 15 C -0.194 4.194 16 N -0.599 5.599 17 Si 0.768 3.232 18 H -0.193 1.193 19 H -0.218 1.218 20 H -0.157 1.157 21 C 0.005 3.995 22 H 0.134 0.866 23 H 0.104 0.896 24 H 0.137 0.863 25 H 0.101 0.899 26 H 0.138 0.862 27 H 0.128 0.872 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.563 -13.120 -2.239 21.248 hybrid contribution 1.261 0.674 -0.295 1.460 sum -15.301 -12.447 -2.534 19.886 Atomic orbital electron populations 1.21931 0.87025 1.05975 1.06617 1.22021 0.92940 0.82487 0.74662 1.90723 1.72580 1.33648 1.52936 1.48479 1.06633 1.07465 1.71926 1.22166 0.97849 0.82271 0.99892 1.21933 0.95030 1.01460 0.98203 1.21702 0.95886 0.94991 1.02859 1.21316 0.95654 0.96121 0.96183 0.94371 1.19172 0.92432 0.93535 0.95656 0.94636 1.21896 0.99565 0.98730 0.98627 1.21260 1.08624 0.97678 1.26738 0.96683 1.26061 0.97199 0.97469 0.98703 1.70106 1.20632 1.24919 1.44284 0.85781 0.76973 0.80980 0.79481 1.19333 1.21801 1.15725 1.21332 0.79342 1.00482 0.98329 0.86648 0.89609 0.86305 0.89887 0.86151 0.87177 0.92278 0.91254 0.90558 0.91518 0.95161 0.94337 0.92876 0.93714 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 8.67 71.24 0.62 -2.28 16 2 C 0.49 16.59 7.81 87.66 0.68 17.28 16 3 O -0.62 -29.62 16.50 -3.03 -0.05 -29.67 16 4 N -0.61 -19.39 2.97 -818.82 -2.43 -21.83 16 5 C 0.10 1.84 6.34 86.36 0.55 2.38 16 6 C -0.13 -2.38 6.08 30.67 0.19 -2.20 16 7 C -0.12 -3.07 4.85 30.62 0.15 -2.92 16 8 C -0.07 -2.84 1.91 -10.70 -0.02 -2.86 16 9 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 10 C 0.01 0.52 1.53 -11.54 -0.02 0.50 16 11 H 0.04 1.57 5.37 -2.39 -0.01 1.56 16 12 C -0.13 -5.20 8.64 71.98 0.62 -4.58 16 13 C -0.50 -29.82 7.72 25.60 0.20 -29.62 16 14 H 0.01 1.02 8.06 -2.91 -0.02 0.99 16 15 C 0.00 0.07 5.47 84.66 0.46 0.53 16 16 N -0.96 -63.38 13.96 21.45 0.30 -63.08 16 17 Si 0.94 45.21 26.94 68.60 1.85 47.06 16 18 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 19 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 20 H -0.23 -9.98 6.89 99.48 0.69 -9.29 16 21 C 0.13 5.34 5.36 86.38 0.46 5.80 16 22 H 0.12 1.46 7.69 -2.39 -0.02 1.44 16 23 H 0.08 1.67 8.12 -2.39 -0.02 1.65 16 24 H 0.12 1.40 7.94 -2.39 -0.02 1.38 16 25 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.12 1.29 5.93 -2.39 -0.01 1.28 16 27 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.08 1.86 6.50 -2.39 -0.02 1.85 16 31 H 0.07 2.09 6.75 -2.39 -0.02 2.08 16 32 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.26 16.27 8.31 -92.70 -0.77 15.49 16 35 H 0.04 2.41 6.31 -2.39 -0.02 2.40 16 36 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -82.05 281.96 4.58 -77.47 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 1.02 Total: 8.00 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: 3.89 Total: -17.95 kcal Atomic # 7 Polarization: -82.78 SS G_CDS: -2.13 Total: -84.91 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -0.05 Total: -29.67 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.85 Total: 47.06 kcal Total: -82.05 4.58 -77.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261262565.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.710 kcal (2) G-P(sol) polarization free energy of solvation -82.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds