Wall clock time and date at job start Mon Mar 30 2020 03:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21274 * 120.00071 * 2 1 4 4 N 1.34779 * 119.99628 * 180.02562 * 2 1 3 5 5 C 1.46922 * 120.62821 * 180.02562 * 4 2 1 6 6 C 1.53195 * 108.77322 * 233.58208 * 5 4 2 7 7 C 1.53031 * 109.31362 * 305.35977 * 6 5 4 8 8 C 1.52996 * 109.46178 * 181.38437 * 7 6 5 9 9 H 1.08994 * 109.47405 * 300.00265 * 8 7 6 10 10 C 1.52996 * 109.47068 * 60.00585 * 8 7 6 11 11 C 1.50702 * 109.47159 * 180.02562 * 8 7 6 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 8 7 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 8 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 8 16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11 19 19 C 1.53045 * 109.53514 * 61.36533 * 7 6 5 20 20 C 1.46924 * 120.63301 * 359.97361 * 4 2 1 21 21 H 1.08995 * 109.47482 * 239.99860 * 1 2 3 22 22 H 1.09002 * 109.47064 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47478 * 119.99449 * 1 2 3 24 24 H 1.08999 * 109.59204 * 113.79207 * 5 4 2 25 25 H 1.09007 * 109.70521 * 353.43825 * 5 4 2 26 26 H 1.09004 * 109.49362 * 185.41154 * 6 5 4 27 27 H 1.08999 * 109.52423 * 65.33604 * 6 5 4 28 28 H 1.09001 * 109.46710 * 301.36441 * 7 6 5 29 29 H 1.09001 * 109.47094 * 180.02562 * 10 8 7 30 30 H 1.09003 * 109.46851 * 300.00074 * 10 8 7 31 31 H 1.09003 * 109.47532 * 60.00149 * 10 8 7 32 32 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 33 33 H 1.09008 * 109.49681 * 58.58685 * 19 7 6 34 34 H 1.09007 * 109.49896 * 178.68118 * 19 7 6 35 35 H 1.09001 * 109.58908 * 246.20522 * 20 4 2 36 36 H 1.09002 * 109.58416 * 6.63072 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.6499 -1.1835 0.0000 6 6 4.1339 -2.0492 -1.1675 7 6 3.4901 -3.4341 -1.0716 8 6 3.9978 -4.3127 -2.2166 9 1 3.7346 -3.8549 -3.1701 10 6 5.5185 -4.4493 -2.1190 11 6 3.3635 -5.6765 -2.1227 12 1 2.6675 -5.8947 -1.3262 13 6 3.6669 -6.6438 -3.0573 14 7 4.5141 -6.3780 -4.0274 15 14 2.8748 -8.3318 -2.9452 16 1 1.6067 -8.3358 -3.7181 17 1 3.7989 -9.3504 -3.5052 18 1 2.5888 -8.6511 -1.5235 19 6 1.9687 -3.2991 -1.1685 20 6 1.4602 -2.4476 -0.0005 21 1 -0.3634 -0.5138 0.8899 22 1 -0.3633 1.0277 0.0005 23 1 -0.3634 -0.5137 -0.8900 24 1 4.0105 -1.6024 0.9395 25 1 4.0287 -0.1680 -0.1164 26 1 5.2184 -2.1481 -1.1219 27 1 3.8507 -1.5808 -2.1102 28 1 3.7537 -3.8920 -0.1182 29 1 5.8803 -5.0749 -2.9350 30 1 5.9770 -3.4627 -2.1871 31 1 5.7818 -4.9072 -1.1655 32 1 4.7279 -7.0587 -4.6847 33 1 1.7054 -2.8188 -2.1109 34 1 1.5121 -4.2880 -1.1236 35 1 1.6424 -2.9695 0.9389 36 1 0.3920 -2.2657 -0.1186 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261273866.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:12 Heat of formation + Delta-G solvation = -58.266922 kcal Electronic energy + Delta-G solvation = -16154.730656 eV Core-core repulsion = 13637.946284 eV Total energy + Delta-G solvation = -2516.784372 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.89207 -37.45944 -34.66648 -32.33055 -31.13829 -29.87907 -28.56854 -25.34967 -24.42396 -22.52638 -21.05282 -19.36383 -18.55356 -16.84394 -16.26417 -15.58391 -15.29092 -14.66057 -13.66119 -13.64156 -13.30981 -13.17609 -13.01808 -12.60219 -12.30313 -12.00562 -11.75626 -11.69595 -11.09397 -10.89652 -10.82091 -10.65394 -10.34165 -10.06985 -10.03254 -9.71482 -9.50274 -9.14220 -8.66378 -8.34776 -8.28976 -5.97961 -4.04259 2.77277 3.24772 3.28294 3.35964 3.37728 4.42386 4.72490 5.10149 5.24585 5.31072 5.34777 5.43452 5.51630 5.55856 5.68174 5.72807 5.87758 6.02596 6.09692 6.39487 6.40760 6.53812 6.70987 6.84045 6.88195 6.99883 7.08536 7.23992 7.40086 7.63147 7.73568 8.00929 8.16828 8.32672 8.46282 8.99342 9.60353 11.07848 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.042869 B = 0.006836 C = 0.006169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.000940 B = 4095.084310 C = 4537.564644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.509 3.491 3 O -0.561 6.561 4 N -0.606 5.606 5 C 0.110 3.890 6 C -0.131 4.131 7 C -0.075 4.075 8 C 0.049 3.951 9 H 0.024 0.976 10 C -0.138 4.138 11 C -0.509 4.509 12 H 0.056 0.944 13 C 0.060 3.940 14 N -0.890 5.890 15 Si 0.887 3.113 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.275 1.275 19 C -0.121 4.121 20 C 0.103 3.897 21 H 0.085 0.915 22 H 0.087 0.913 23 H 0.088 0.912 24 H 0.062 0.938 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.009 0.991 31 H 0.023 0.977 32 H 0.259 0.741 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.127 6.809 7.178 11.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.298 3.702 3 O -0.441 6.441 4 N -0.340 5.340 5 C -0.012 4.012 6 C -0.169 4.169 7 C -0.094 4.094 8 C 0.030 3.970 9 H 0.042 0.958 10 C -0.196 4.196 11 C -0.547 4.547 12 H 0.074 0.926 13 C -0.141 4.141 14 N -0.530 5.530 15 Si 0.715 3.285 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.200 1.200 19 C -0.159 4.159 20 C -0.020 4.020 21 H 0.104 0.896 22 H 0.106 0.894 23 H 0.107 0.893 24 H 0.080 0.920 25 H 0.102 0.898 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.028 0.972 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.725 7.266 7.025 11.616 hybrid contribution -0.403 -1.180 -0.053 1.248 sum -6.128 6.086 6.972 11.100 Atomic orbital electron populations 1.21922 0.92311 1.04891 1.04108 1.20759 0.90550 0.83188 0.75736 1.90668 1.70886 1.31266 1.51235 1.48230 1.07378 1.06132 1.72214 1.21666 0.79027 1.01444 0.99061 1.22076 1.00920 0.96566 0.97309 1.21187 0.93265 0.93773 1.01154 1.18663 0.92364 0.93575 0.92350 0.95833 1.21846 0.98746 0.97760 1.01228 1.21202 1.25378 0.96849 1.11297 0.92618 1.24974 0.95196 0.98467 0.95471 1.69896 1.34184 1.33984 1.14889 0.86678 0.79186 0.84460 0.78148 1.20814 1.21353 1.20003 1.21928 0.97728 0.99821 0.96385 1.21970 0.95981 0.83788 1.00230 0.89629 0.89431 0.89332 0.92005 0.89835 0.90746 0.92227 0.92502 0.90221 0.97180 0.95782 0.93135 0.92289 0.89584 0.91597 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 8.67 36.01 0.31 -1.46 16 2 C 0.51 7.65 7.81 -10.99 -0.09 7.57 16 3 O -0.56 -10.56 16.50 5.56 0.09 -10.47 16 4 N -0.61 -8.99 2.97 -172.75 -0.51 -9.50 16 5 C 0.11 1.71 6.43 -3.71 -0.02 1.68 16 6 C -0.13 -2.24 5.04 -26.61 -0.13 -2.37 16 7 C -0.08 -1.43 1.70 -90.58 -0.15 -1.58 16 8 C 0.05 1.16 1.89 -91.77 -0.17 0.98 16 9 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 10 C -0.14 -3.24 8.62 37.16 0.32 -2.92 16 11 C -0.51 -13.18 7.81 -34.44 -0.27 -13.45 16 12 H 0.06 1.40 6.71 -52.49 -0.35 1.05 16 13 C 0.06 1.61 5.31 -17.82 -0.09 1.51 16 14 N -0.89 -25.11 11.33 55.43 0.63 -24.48 16 15 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 C -0.12 -2.02 5.13 -26.59 -0.14 -2.16 16 20 C 0.10 1.36 6.34 -3.70 -0.02 1.34 16 21 H 0.09 0.70 7.94 -51.93 -0.41 0.29 16 22 H 0.09 0.85 8.12 -51.93 -0.42 0.43 16 23 H 0.09 0.80 7.69 -51.93 -0.40 0.40 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.08 1.35 7.01 -51.93 -0.36 0.98 16 26 H 0.07 1.26 6.36 -51.93 -0.33 0.93 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.08 2.10 6.08 -51.93 -0.32 1.78 16 30 H 0.01 0.20 6.40 -51.93 -0.33 -0.13 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.06 1.04 8.14 -51.92 -0.42 0.61 16 34 H 0.09 1.52 6.57 -51.92 -0.34 1.18 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.83 5.93 -51.93 -0.31 0.52 16 LS Contribution 280.53 15.07 4.23 4.23 Total: -1.00 -29.87 280.53 -6.72 -36.59 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -5.67 Total: -1.18 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -0.46 Total: -10.86 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: 0.11 Total: -33.98 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.87 -6.72 -36.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261273866.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.681 kcal (2) G-P(sol) polarization free energy of solvation -29.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds