Wall clock time and date at job start Mon Mar 30 2020 03:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21274 * 120.00071 * 2 1 4 4 N 1.34779 * 119.99628 * 180.02562 * 2 1 3 5 5 C 1.46922 * 120.62821 * 180.02562 * 4 2 1 6 6 C 1.53195 * 108.77322 * 233.58208 * 5 4 2 7 7 C 1.53031 * 109.31362 * 305.35977 * 6 5 4 8 8 C 1.52996 * 109.46178 * 181.38437 * 7 6 5 9 9 H 1.08994 * 109.47405 * 300.00265 * 8 7 6 10 10 C 1.52996 * 109.47068 * 60.00585 * 8 7 6 11 11 C 1.50702 * 109.47159 * 180.02562 * 8 7 6 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 8 7 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 8 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 8 16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11 19 19 C 1.53045 * 109.53514 * 61.36533 * 7 6 5 20 20 C 1.46924 * 120.63301 * 359.97361 * 4 2 1 21 21 H 1.08995 * 109.47482 * 239.99860 * 1 2 3 22 22 H 1.09002 * 109.47064 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47478 * 119.99449 * 1 2 3 24 24 H 1.08999 * 109.59204 * 113.79207 * 5 4 2 25 25 H 1.09007 * 109.70521 * 353.43825 * 5 4 2 26 26 H 1.09004 * 109.49362 * 185.41154 * 6 5 4 27 27 H 1.08999 * 109.52423 * 65.33604 * 6 5 4 28 28 H 1.09001 * 109.46710 * 301.36441 * 7 6 5 29 29 H 1.09001 * 109.47094 * 180.02562 * 10 8 7 30 30 H 1.09003 * 109.46851 * 300.00074 * 10 8 7 31 31 H 1.09003 * 109.47532 * 60.00149 * 10 8 7 32 32 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 33 33 H 1.09008 * 109.49681 * 58.58685 * 19 7 6 34 34 H 1.09007 * 109.49896 * 178.68118 * 19 7 6 35 35 H 1.09001 * 109.58908 * 246.20522 * 20 4 2 36 36 H 1.09002 * 109.58416 * 6.63072 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.6499 -1.1835 0.0000 6 6 4.1339 -2.0492 -1.1675 7 6 3.4901 -3.4341 -1.0716 8 6 3.9978 -4.3127 -2.2166 9 1 3.7346 -3.8549 -3.1701 10 6 5.5185 -4.4493 -2.1190 11 6 3.3635 -5.6765 -2.1227 12 1 2.6675 -5.8947 -1.3262 13 6 3.6669 -6.6438 -3.0573 14 7 4.5141 -6.3780 -4.0274 15 14 2.8748 -8.3318 -2.9452 16 1 1.6067 -8.3358 -3.7181 17 1 3.7989 -9.3504 -3.5052 18 1 2.5888 -8.6511 -1.5235 19 6 1.9687 -3.2991 -1.1685 20 6 1.4602 -2.4476 -0.0005 21 1 -0.3634 -0.5138 0.8899 22 1 -0.3633 1.0277 0.0005 23 1 -0.3634 -0.5137 -0.8900 24 1 4.0105 -1.6024 0.9395 25 1 4.0287 -0.1680 -0.1164 26 1 5.2184 -2.1481 -1.1219 27 1 3.8507 -1.5808 -2.1102 28 1 3.7537 -3.8920 -0.1182 29 1 5.8803 -5.0749 -2.9350 30 1 5.9770 -3.4627 -2.1871 31 1 5.7818 -4.9072 -1.1655 32 1 4.7279 -7.0587 -4.6847 33 1 1.7054 -2.8188 -2.1109 34 1 1.5121 -4.2880 -1.1236 35 1 1.6424 -2.9695 0.9389 36 1 0.3920 -2.2657 -0.1186 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261273866.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:12 Heat of formation + Delta-G solvation = -75.956217 kcal Electronic energy + Delta-G solvation = -16155.497721 eV Core-core repulsion = 13637.946284 eV Total energy + Delta-G solvation = -2517.551437 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.11061 -38.88385 -36.27532 -34.05045 -32.41534 -31.33306 -29.81740 -27.27022 -25.87665 -23.87310 -22.55856 -20.94142 -19.84786 -18.26547 -18.00178 -16.75041 -16.60333 -16.40960 -15.09068 -15.04193 -14.82192 -14.63561 -14.29388 -13.95671 -13.47350 -13.42385 -13.00157 -12.95706 -12.89540 -12.65341 -12.44510 -12.22323 -12.07186 -11.90977 -11.57831 -11.26936 -10.94984 -10.72318 -10.50591 -10.36443 -9.57422 -8.02350 -6.14876 1.43928 1.45701 1.54438 1.64755 2.13914 2.47423 3.25925 3.70253 3.97970 4.08993 4.17662 4.26029 4.44991 4.48650 4.59962 4.65368 4.73921 4.81661 4.88809 4.97259 5.02703 5.05837 5.11152 5.21764 5.37400 5.41668 5.49158 5.57199 5.65905 5.71989 6.06301 6.21103 6.44851 6.51501 6.98179 7.18886 7.53259 9.02607 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.042869 B = 0.006836 C = 0.006169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.000940 B = 4095.084310 C = 4537.564644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.501 3.499 3 O -0.607 6.607 4 N -0.610 5.610 5 C 0.114 3.886 6 C -0.122 4.122 7 C -0.069 4.069 8 C 0.046 3.954 9 H -0.013 1.013 10 C -0.131 4.131 11 C -0.515 4.515 12 H 0.064 0.936 13 C 0.006 3.994 14 N -0.924 5.924 15 Si 0.949 3.051 16 H -0.278 1.278 17 H -0.292 1.292 18 H -0.264 1.264 19 C -0.117 4.117 20 C 0.111 3.889 21 H 0.115 0.885 22 H 0.091 0.909 23 H 0.105 0.895 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.042 0.958 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.029 0.971 31 H 0.027 0.973 32 H 0.256 0.744 33 H 0.044 0.956 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.960 6.595 8.921 13.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.292 3.708 3 O -0.489 6.489 4 N -0.342 5.342 5 C -0.008 4.008 6 C -0.160 4.160 7 C -0.087 4.087 8 C 0.027 3.973 9 H 0.005 0.995 10 C -0.188 4.188 11 C -0.553 4.553 12 H 0.082 0.918 13 C -0.192 4.192 14 N -0.565 5.565 15 Si 0.776 3.224 16 H -0.204 1.204 17 H -0.218 1.218 18 H -0.188 1.188 19 C -0.156 4.156 20 C -0.011 4.011 21 H 0.133 0.867 22 H 0.110 0.890 23 H 0.123 0.877 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.579 7.039 8.782 13.569 hybrid contribution 0.206 -1.098 -0.629 1.282 sum -7.373 5.941 8.153 12.495 Atomic orbital electron populations 1.21961 0.88256 1.06043 1.06205 1.21660 0.92500 0.82297 0.74365 1.90650 1.72221 1.32799 1.53267 1.48359 1.07064 1.06910 1.71852 1.21543 0.80067 1.00457 0.98762 1.21945 1.00827 0.95763 0.97449 1.21045 0.95082 0.93648 0.98974 1.18645 0.92462 0.93611 0.92551 0.99505 1.21715 0.98912 0.98220 0.99988 1.21597 1.25025 0.97673 1.11043 0.91813 1.25770 0.95858 1.02167 0.95381 1.70055 1.35727 1.34967 1.15752 0.85684 0.78124 0.80045 0.78560 1.20361 1.21798 1.18793 1.21836 0.95950 1.00169 0.97600 1.22024 0.97596 0.82399 0.99081 0.86701 0.88994 0.87688 0.90329 0.90762 0.90790 0.93950 0.92171 0.93420 0.95224 0.95387 0.93456 0.93708 0.90363 0.89880 0.86748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 8.67 71.24 0.62 -2.15 16 2 C 0.50 13.92 7.81 87.66 0.68 14.60 16 3 O -0.61 -22.30 16.50 -3.01 -0.05 -22.35 16 4 N -0.61 -16.57 2.97 -818.85 -2.43 -19.00 16 5 C 0.11 3.37 6.43 86.36 0.56 3.93 16 6 C -0.12 -4.10 5.04 30.67 0.15 -3.95 16 7 C -0.07 -2.56 1.70 -10.77 -0.02 -2.57 16 8 C 0.05 2.19 1.89 -11.54 -0.02 2.17 16 9 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 10 C -0.13 -6.21 8.62 71.98 0.62 -5.59 16 11 C -0.52 -26.63 7.81 25.60 0.20 -26.43 16 12 H 0.06 3.13 6.71 -2.91 -0.02 3.11 16 13 C 0.01 0.31 5.31 84.66 0.45 0.76 16 14 N -0.92 -53.35 11.33 21.45 0.24 -53.10 16 15 Si 0.95 42.34 29.54 68.60 2.03 44.36 16 16 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 17 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 18 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 19 C -0.12 -3.75 5.13 30.68 0.16 -3.59 16 20 C 0.11 2.54 6.34 86.37 0.55 3.09 16 21 H 0.11 1.29 7.94 -2.39 -0.02 1.27 16 22 H 0.09 1.50 8.12 -2.39 -0.02 1.48 16 23 H 0.10 1.46 7.69 -2.39 -0.02 1.44 16 24 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.07 2.35 7.01 -2.38 -0.02 2.34 16 26 H 0.07 2.46 6.36 -2.38 -0.02 2.45 16 27 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.05 2.57 6.08 -2.39 -0.01 2.56 16 30 H 0.03 1.24 6.40 -2.39 -0.02 1.22 16 31 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.26 14.21 8.31 -92.70 -0.77 13.44 16 33 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.08 2.62 6.57 -2.38 -0.02 2.61 16 35 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.11 1.85 5.93 -2.39 -0.01 1.83 16 Total: -1.00 -65.69 280.53 4.78 -60.91 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 1.05 Total: 8.92 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: 3.95 Total: -19.74 kcal Atomic # 7 Polarization: -69.91 SS G_CDS: -2.19 Total: -72.10 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.05 Total: -22.35 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -65.69 4.78 -60.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261273866.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.048 kcal (2) G-P(sol) polarization free energy of solvation -65.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds