Wall clock time and date at job start Mon Mar 30 2020 03:07:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 H 1.08996 * 109.47399 * 2 1
4 4 C 1.50701 * 109.46821 * 239.99904 * 2 1 3
5 5 H 1.07999 * 119.99996 * 239.99846 * 4 2 1
6 6 C 1.37871 * 119.99990 * 60.00434 * 4 2 1
7 7 N 1.31516 * 120.00066 * 359.97438 * 6 4 2
8 8 Si 1.86800 * 120.00198 * 179.97438 * 6 4 2
9 9 H 1.48503 * 109.46994 * 89.99698 * 8 6 4
10 10 H 1.48503 * 109.47351 * 209.99912 * 8 6 4
11 11 H 1.48501 * 109.46953 * 330.00247 * 8 6 4
12 12 N 1.46899 * 109.46921 * 120.00101 * 2 1 3
13 13 C 1.46896 * 111.00061 * 274.99742 * 12 2 1
14 14 H 1.08998 * 110.54235 * 31.59383 * 13 12 2
15 15 C 1.54817 * 110.48814 * 154.21385 * 13 12 2
16 16 C 1.54994 * 102.12502 * 139.57746 * 15 13 12
17 17 O 1.44385 * 103.48866 * 322.95681 * 16 15 13
18 18 C 1.43745 * 106.97602 * 40.06258 * 17 16 15
19 19 H 1.09000 * 109.87928 * 92.90719 * 18 17 16
20 20 C 1.52999 * 109.87901 * 214.06487 * 18 17 16
21 21 C 1.52998 * 117.49935 * 10.61560 * 20 18 17
22 22 C 1.53002 * 117.49637 * 301.95786 * 20 18 17
23 23 H 1.09002 * 109.47018 * 300.00112 * 1 2 3
24 24 H 1.08992 * 109.46680 * 59.99951 * 1 2 3
25 25 H 1.08999 * 109.46744 * 179.97438 * 1 2 3
26 26 H 0.97001 * 120.00055 * 180.02562 * 7 6 4
27 27 H 1.00903 * 110.99634 * 151.04607 * 12 2 1
28 28 H 1.08996 * 110.90768 * 21.35521 * 15 13 12
29 29 H 1.09005 * 110.90170 * 257.79073 * 15 13 12
30 30 H 1.08993 * 110.62392 * 81.45721 * 16 15 13
31 31 H 1.09000 * 110.61459 * 204.46239 * 16 15 13
32 32 H 1.08999 * 115.54892 * 156.29089 * 20 18 17
33 33 H 1.08996 * 117.50195 * 0.02562 * 21 20 18
34 34 H 1.09004 * 117.49957 * 145.02411 * 21 20 18
35 35 H 1.09003 * 117.50031 * 214.98472 * 22 20 18
36 36 H 1.08999 * 117.50173 * 359.97438 * 22 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.6532 -1.5885 -1.1314
6 6 1.6993 -0.2394 -2.4827
7 7 0.9429 0.8297 -2.6034
8 14 2.3224 -1.1195 -4.0080
9 1 1.3447 -2.1615 -4.4123
10 1 2.4873 -0.1402 -5.1121
11 1 3.6307 -1.7567 -3.7120
12 7 2.0197 -0.6925 1.1994
13 6 2.0825 0.2225 2.3469
14 1 1.3005 0.9786 2.2764
15 6 1.9579 -0.5639 3.6746
16 6 2.9957 0.1524 4.5759
17 8 4.0730 0.4643 3.6666
18 6 3.4709 0.8880 2.4320
19 1 3.3629 1.9726 2.4253
20 6 4.3353 0.4410 1.2514
21 6 5.4738 -0.5392 1.5406
22 6 5.7868 0.9236 1.2159
23 1 -0.3633 0.5139 0.8900
24 1 -0.3632 0.5138 -0.8899
25 1 -0.3633 -1.0277 -0.0005
26 1 0.7082 1.1609 -3.4844
27 1 2.9174 -1.1205 1.0287
28 1 2.2233 -1.6115 3.5325
29 1 0.9537 -0.4716 4.0885
30 1 2.5733 1.0643 4.9977
31 1 3.3415 -0.5133 5.3667
32 1 3.8147 0.3410 0.2989
33 1 5.6069 -0.8660 2.5718
34 1 5.7027 -1.2839 0.7782
35 1 6.2213 1.1407 0.2401
36 1 6.1258 1.5598 2.0335
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000300371464.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:07:17
Heat of formation + Delta-G solvation = -15.542944 kcal
Electronic energy + Delta-G solvation = -16535.089736 eV
Core-core repulsion = 14020.158016 eV
Total energy + Delta-G solvation = -2514.931721 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-39.74932 -36.06889 -35.42129 -32.71380 -30.52963 -28.81569 -26.51367 -25.21469
-23.17018 -21.94364 -21.01068 -20.03724 -19.03193 -16.86503 -15.96879 -15.72254
-15.19302 -14.78512 -14.23787 -13.79375 -13.58170 -13.04415 -12.66005 -11.82950
-11.78251 -11.57126 -11.17524 -11.12996 -11.02383 -10.89191 -10.72128 -10.39534
-10.28223 -10.11619 -9.86556 -9.80311 -9.65020 -9.26719 -8.84941 -8.50109
-7.25397 -6.06222 -4.13077 3.27705 3.34520 3.37230 4.14525 4.23795
4.37348 4.98689 5.03612 5.19625 5.27005 5.31435 5.40260 5.49961
5.57255 5.82628 5.85023 5.97063 6.01071 6.06456 6.18409 6.30731
6.42203 6.47492 6.59918 6.76031 6.86596 7.11887 7.19464 7.26482
7.49808 7.75278 7.86494 8.24999 8.38755 8.65120 8.98727 9.53556
10.99765
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.030862 B = 0.009111 C = 0.007677
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 907.044972 B = 3072.326790 C = 3646.479481
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C 0.209 3.791
3 H 0.004 0.996
4 C -0.519 4.519
5 H 0.059 0.941
6 C 0.064 3.936
7 N -0.887 5.887
8 Si 0.894 3.106
9 H -0.280 1.280
10 H -0.287 1.287
11 H -0.274 1.274
12 N -0.679 5.679
13 C 0.066 3.934
14 H 0.082 0.918
15 C -0.143 4.143
16 C 0.044 3.956
17 O -0.376 6.376
18 C 0.079 3.921
19 H 0.063 0.937
20 C -0.168 4.168
21 C -0.166 4.166
22 C -0.179 4.179
23 H 0.003 0.997
24 H 0.080 0.920
25 H 0.031 0.969
26 H 0.261 0.739
27 H 0.342 0.658
28 H 0.081 0.919
29 H 0.073 0.927
30 H 0.053 0.947
31 H 0.086 0.914
32 H 0.145 0.855
33 H 0.098 0.902
34 H 0.089 0.911
35 H 0.089 0.911
36 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.327 -0.169 9.769 10.686
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C 0.102 3.898
3 H 0.021 0.979
4 C -0.558 4.558
5 H 0.078 0.922
6 C -0.138 4.138
7 N -0.526 5.526
8 Si 0.722 3.278
9 H -0.206 1.206
10 H -0.213 1.213
11 H -0.199 1.199
12 N -0.313 5.313
13 C -0.046 4.046
14 H 0.100 0.900
15 C -0.182 4.182
16 C -0.033 4.033
17 O -0.295 6.295
18 C 0.020 3.980
19 H 0.081 0.919
20 C -0.186 4.186
21 C -0.203 4.203
22 C -0.216 4.216
23 H 0.022 0.978
24 H 0.099 0.901
25 H 0.050 0.950
26 H 0.071 0.929
27 H 0.163 0.837
28 H 0.100 0.900
29 H 0.092 0.908
30 H 0.072 0.928
31 H 0.104 0.896
32 H 0.163 0.837
33 H 0.116 0.884
34 H 0.108 0.892
35 H 0.107 0.893
36 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges 3.848 -0.321 9.807 10.539
hybrid contribution 0.741 0.216 -1.147 1.383
sum 4.589 -0.105 8.659 9.801
Atomic orbital electron populations
1.21740 0.97981 0.99366 0.99292 1.19140 0.92532 0.92488 0.85627
0.97875 1.21228 1.31623 1.12560 0.90387 0.92249 1.24906 0.94979
0.94918 0.99013 1.69894 1.36428 1.22762 1.23505 0.86557 0.79272
0.79376 0.82563 1.20622 1.21280 1.19896 1.60781 1.33157 1.31655
1.05665 1.22884 0.94460 0.94399 0.92889 0.90012 1.23148 0.99039
1.01031 0.94965 1.23499 0.88236 0.98378 0.93151 1.88809 1.30029
1.87214 1.23412 1.22945 0.93630 0.97860 0.83613 0.91894 1.22901
0.90412 1.04742 1.00590 1.22806 1.02608 0.92390 1.02453 1.22851
0.98838 0.97755 1.02145 0.97801 0.90102 0.94963 0.92892 0.83670
0.90032 0.90785 0.92841 0.89601 0.83748 0.88352 0.89229 0.89252
0.89428
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.08 9.18 37.16 0.34 -2.74 16
2 C 0.21 5.13 1.33 -68.86 -0.09 5.04 16
3 H 0.00 0.10 7.34 -51.93 -0.38 -0.28 16
4 C -0.52 -13.80 7.88 -34.44 -0.27 -14.07 16
5 H 0.06 1.57 7.62 -52.49 -0.40 1.17 16
6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16
7 N -0.89 -24.85 11.32 55.43 0.63 -24.22 16
8 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16
9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16
11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16
12 N -0.68 -14.25 5.88 -99.30 -0.58 -14.83 16
13 C 0.07 1.19 3.12 -66.13 -0.21 0.98 16
14 H 0.08 1.53 7.22 -51.93 -0.37 1.15 16
15 C -0.14 -2.13 6.87 -24.72 -0.17 -2.30 16
16 C 0.04 0.59 7.72 38.21 0.29 0.89 16
17 O -0.38 -6.13 9.58 -35.23 -0.34 -6.47 16
18 C 0.08 1.37 3.79 -26.11 -0.10 1.27 16
19 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16
20 C -0.17 -3.05 3.95 -90.62 -0.36 -3.41 16
21 C -0.17 -2.69 9.72 -26.70 -0.26 -2.95 16
22 C -0.18 -2.87 10.18 -26.69 -0.27 -3.14 16
23 H 0.00 0.07 7.51 -51.93 -0.39 -0.32 16
24 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16
25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16
26 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16
27 H 0.34 7.18 5.63 -39.29 -0.22 6.96 16
28 H 0.08 1.26 8.06 -51.93 -0.42 0.84 16
29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16
30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16
31 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16
32 H 0.15 3.09 4.63 -51.93 -0.24 2.85 16
33 H 0.10 1.57 7.10 -51.93 -0.37 1.20 16
34 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16
35 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16
36 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16
LS Contribution 281.32 15.07 4.24 4.24
Total: -1.00 -27.34 281.32 -7.89 -35.23
By element:
Atomic # 1 Polarization: 14.51 SS G_CDS: -5.63 Total: 8.88 kcal
Atomic # 6 Polarization: -17.61 SS G_CDS: -1.19 Total: -18.80 kcal
Atomic # 7 Polarization: -39.10 SS G_CDS: 0.04 Total: -39.05 kcal
Atomic # 8 Polarization: -6.13 SS G_CDS: -0.34 Total: -6.47 kcal
Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal
Total LS contribution 4.24 Total: 4.24 kcal
Total: -27.34 -7.89 -35.23 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000300371464.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.690 kcal
(2) G-P(sol) polarization free energy of solvation -27.343 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.653 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.233 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.543 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds