Wall clock time and date at job start Mon Mar 30 2020 03:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47399 * 2 1 4 4 C 1.50701 * 109.46821 * 239.99904 * 2 1 3 5 5 H 1.07999 * 119.99996 * 239.99846 * 4 2 1 6 6 C 1.37871 * 119.99990 * 60.00434 * 4 2 1 7 7 N 1.31516 * 120.00066 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00198 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46994 * 89.99698 * 8 6 4 10 10 H 1.48503 * 109.47351 * 209.99912 * 8 6 4 11 11 H 1.48501 * 109.46953 * 330.00247 * 8 6 4 12 12 N 1.46899 * 109.46921 * 120.00101 * 2 1 3 13 13 C 1.46896 * 111.00061 * 274.99742 * 12 2 1 14 14 H 1.08998 * 110.54235 * 31.59383 * 13 12 2 15 15 C 1.54817 * 110.48814 * 154.21385 * 13 12 2 16 16 C 1.54994 * 102.12502 * 139.57746 * 15 13 12 17 17 O 1.44385 * 103.48866 * 322.95681 * 16 15 13 18 18 C 1.43745 * 106.97602 * 40.06258 * 17 16 15 19 19 H 1.09000 * 109.87928 * 92.90719 * 18 17 16 20 20 C 1.52999 * 109.87901 * 214.06487 * 18 17 16 21 21 C 1.52998 * 117.49935 * 10.61560 * 20 18 17 22 22 C 1.53002 * 117.49637 * 301.95786 * 20 18 17 23 23 H 1.09002 * 109.47018 * 300.00112 * 1 2 3 24 24 H 1.08992 * 109.46680 * 59.99951 * 1 2 3 25 25 H 1.08999 * 109.46744 * 179.97438 * 1 2 3 26 26 H 0.97001 * 120.00055 * 180.02562 * 7 6 4 27 27 H 1.00903 * 110.99634 * 151.04607 * 12 2 1 28 28 H 1.08996 * 110.90768 * 21.35521 * 15 13 12 29 29 H 1.09005 * 110.90170 * 257.79073 * 15 13 12 30 30 H 1.08993 * 110.62392 * 81.45721 * 16 15 13 31 31 H 1.09000 * 110.61459 * 204.46239 * 16 15 13 32 32 H 1.08999 * 115.54892 * 156.29089 * 20 18 17 33 33 H 1.08996 * 117.50195 * 0.02562 * 21 20 18 34 34 H 1.09004 * 117.49957 * 145.02411 * 21 20 18 35 35 H 1.09003 * 117.50031 * 214.98472 * 22 20 18 36 36 H 1.08999 * 117.50173 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.3447 -2.1615 -4.4123 10 1 2.4873 -0.1402 -5.1121 11 1 3.6307 -1.7567 -3.7120 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3469 14 1 1.3005 0.9786 2.2764 15 6 1.9579 -0.5639 3.6746 16 6 2.9957 0.1524 4.5759 17 8 4.0730 0.4643 3.6666 18 6 3.4709 0.8880 2.4320 19 1 3.3629 1.9726 2.4253 20 6 4.3353 0.4410 1.2514 21 6 5.4738 -0.5392 1.5406 22 6 5.7868 0.9236 1.2159 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7082 1.1609 -3.4844 27 1 2.9174 -1.1205 1.0287 28 1 2.2233 -1.6115 3.5325 29 1 0.9537 -0.4716 4.0885 30 1 2.5733 1.0643 4.9977 31 1 3.3415 -0.5133 5.3667 32 1 3.8147 0.3410 0.2989 33 1 5.6069 -0.8660 2.5718 34 1 5.7027 -1.2839 0.7782 35 1 6.2213 1.1407 0.2401 36 1 6.1258 1.5598 2.0335 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300371464.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:17 Heat of formation + Delta-G solvation = -15.542944 kcal Electronic energy + Delta-G solvation = -16535.089736 eV Core-core repulsion = 14020.158016 eV Total energy + Delta-G solvation = -2514.931721 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.74932 -36.06889 -35.42129 -32.71380 -30.52963 -28.81569 -26.51367 -25.21469 -23.17018 -21.94364 -21.01068 -20.03724 -19.03193 -16.86503 -15.96879 -15.72254 -15.19302 -14.78512 -14.23787 -13.79375 -13.58170 -13.04415 -12.66005 -11.82950 -11.78251 -11.57126 -11.17524 -11.12996 -11.02383 -10.89191 -10.72128 -10.39534 -10.28223 -10.11619 -9.86556 -9.80311 -9.65020 -9.26719 -8.84941 -8.50109 -7.25397 -6.06222 -4.13077 3.27705 3.34520 3.37230 4.14525 4.23795 4.37348 4.98689 5.03612 5.19625 5.27005 5.31435 5.40260 5.49961 5.57255 5.82628 5.85023 5.97063 6.01071 6.06456 6.18409 6.30731 6.42203 6.47492 6.59918 6.76031 6.86596 7.11887 7.19464 7.26482 7.49808 7.75278 7.86494 8.24999 8.38755 8.65120 8.98727 9.53556 10.99765 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.030862 B = 0.009111 C = 0.007677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.044972 B = 3072.326790 C = 3646.479481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.209 3.791 3 H 0.004 0.996 4 C -0.519 4.519 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.679 5.679 13 C 0.066 3.934 14 H 0.082 0.918 15 C -0.143 4.143 16 C 0.044 3.956 17 O -0.376 6.376 18 C 0.079 3.921 19 H 0.063 0.937 20 C -0.168 4.168 21 C -0.166 4.166 22 C -0.179 4.179 23 H 0.003 0.997 24 H 0.080 0.920 25 H 0.031 0.969 26 H 0.261 0.739 27 H 0.342 0.658 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.145 0.855 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.327 -0.169 9.769 10.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.102 3.898 3 H 0.021 0.979 4 C -0.558 4.558 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.722 3.278 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.313 5.313 13 C -0.046 4.046 14 H 0.100 0.900 15 C -0.182 4.182 16 C -0.033 4.033 17 O -0.295 6.295 18 C 0.020 3.980 19 H 0.081 0.919 20 C -0.186 4.186 21 C -0.203 4.203 22 C -0.216 4.216 23 H 0.022 0.978 24 H 0.099 0.901 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.163 0.837 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.163 0.837 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.848 -0.321 9.807 10.539 hybrid contribution 0.741 0.216 -1.147 1.383 sum 4.589 -0.105 8.659 9.801 Atomic orbital electron populations 1.21740 0.97981 0.99366 0.99292 1.19140 0.92532 0.92488 0.85627 0.97875 1.21228 1.31623 1.12560 0.90387 0.92249 1.24906 0.94979 0.94918 0.99013 1.69894 1.36428 1.22762 1.23505 0.86557 0.79272 0.79376 0.82563 1.20622 1.21280 1.19896 1.60781 1.33157 1.31655 1.05665 1.22884 0.94460 0.94399 0.92889 0.90012 1.23148 0.99039 1.01031 0.94965 1.23499 0.88236 0.98378 0.93151 1.88809 1.30029 1.87214 1.23412 1.22945 0.93630 0.97860 0.83613 0.91894 1.22901 0.90412 1.04742 1.00590 1.22806 1.02608 0.92390 1.02453 1.22851 0.98838 0.97755 1.02145 0.97801 0.90102 0.94963 0.92892 0.83670 0.90032 0.90785 0.92841 0.89601 0.83748 0.88352 0.89229 0.89252 0.89428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 9.18 37.16 0.34 -2.74 16 2 C 0.21 5.13 1.33 -68.86 -0.09 5.04 16 3 H 0.00 0.10 7.34 -51.93 -0.38 -0.28 16 4 C -0.52 -13.80 7.88 -34.44 -0.27 -14.07 16 5 H 0.06 1.57 7.62 -52.49 -0.40 1.17 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.85 11.32 55.43 0.63 -24.22 16 8 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.68 -14.25 5.88 -99.30 -0.58 -14.83 16 13 C 0.07 1.19 3.12 -66.13 -0.21 0.98 16 14 H 0.08 1.53 7.22 -51.93 -0.37 1.15 16 15 C -0.14 -2.13 6.87 -24.72 -0.17 -2.30 16 16 C 0.04 0.59 7.72 38.21 0.29 0.89 16 17 O -0.38 -6.13 9.58 -35.23 -0.34 -6.47 16 18 C 0.08 1.37 3.79 -26.11 -0.10 1.27 16 19 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 20 C -0.17 -3.05 3.95 -90.62 -0.36 -3.41 16 21 C -0.17 -2.69 9.72 -26.70 -0.26 -2.95 16 22 C -0.18 -2.87 10.18 -26.69 -0.27 -3.14 16 23 H 0.00 0.07 7.51 -51.93 -0.39 -0.32 16 24 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.34 7.18 5.63 -39.29 -0.22 6.96 16 28 H 0.08 1.26 8.06 -51.93 -0.42 0.84 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.15 3.09 4.63 -51.93 -0.24 2.85 16 33 H 0.10 1.57 7.10 -51.93 -0.37 1.20 16 34 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 35 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 36 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 281.32 15.07 4.24 4.24 Total: -1.00 -27.34 281.32 -7.89 -35.23 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -5.63 Total: 8.88 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -1.19 Total: -18.80 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.04 Total: -39.05 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.34 Total: -6.47 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -27.34 -7.89 -35.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300371464.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.690 kcal (2) G-P(sol) polarization free energy of solvation -27.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds