Wall clock time and date at job start Mon Mar 30 2020 03:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47399 * 2 1 4 4 C 1.50701 * 109.46821 * 239.99904 * 2 1 3 5 5 H 1.07999 * 119.99996 * 239.99846 * 4 2 1 6 6 C 1.37871 * 119.99990 * 60.00434 * 4 2 1 7 7 N 1.31516 * 120.00066 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00198 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46994 * 89.99698 * 8 6 4 10 10 H 1.48503 * 109.47351 * 209.99912 * 8 6 4 11 11 H 1.48501 * 109.46953 * 330.00247 * 8 6 4 12 12 N 1.46899 * 109.46921 * 120.00101 * 2 1 3 13 13 C 1.46896 * 111.00061 * 274.99742 * 12 2 1 14 14 H 1.08998 * 110.54235 * 31.59383 * 13 12 2 15 15 C 1.54817 * 110.48814 * 154.21385 * 13 12 2 16 16 C 1.54994 * 102.12502 * 139.57746 * 15 13 12 17 17 O 1.44385 * 103.48866 * 322.95681 * 16 15 13 18 18 C 1.43745 * 106.97602 * 40.06258 * 17 16 15 19 19 H 1.09000 * 109.87928 * 92.90719 * 18 17 16 20 20 C 1.52999 * 109.87901 * 214.06487 * 18 17 16 21 21 C 1.52998 * 117.49935 * 10.61560 * 20 18 17 22 22 C 1.53002 * 117.49637 * 301.95786 * 20 18 17 23 23 H 1.09002 * 109.47018 * 300.00112 * 1 2 3 24 24 H 1.08992 * 109.46680 * 59.99951 * 1 2 3 25 25 H 1.08999 * 109.46744 * 179.97438 * 1 2 3 26 26 H 0.97001 * 120.00055 * 180.02562 * 7 6 4 27 27 H 1.00903 * 110.99634 * 151.04607 * 12 2 1 28 28 H 1.08996 * 110.90768 * 21.35521 * 15 13 12 29 29 H 1.09005 * 110.90170 * 257.79073 * 15 13 12 30 30 H 1.08993 * 110.62392 * 81.45721 * 16 15 13 31 31 H 1.09000 * 110.61459 * 204.46239 * 16 15 13 32 32 H 1.08999 * 115.54892 * 156.29089 * 20 18 17 33 33 H 1.08996 * 117.50195 * 0.02562 * 21 20 18 34 34 H 1.09004 * 117.49957 * 145.02411 * 21 20 18 35 35 H 1.09003 * 117.50031 * 214.98472 * 22 20 18 36 36 H 1.08999 * 117.50173 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.3447 -2.1615 -4.4123 10 1 2.4873 -0.1402 -5.1121 11 1 3.6307 -1.7567 -3.7120 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3469 14 1 1.3005 0.9786 2.2764 15 6 1.9579 -0.5639 3.6746 16 6 2.9957 0.1524 4.5759 17 8 4.0730 0.4643 3.6666 18 6 3.4709 0.8880 2.4320 19 1 3.3629 1.9726 2.4253 20 6 4.3353 0.4410 1.2514 21 6 5.4738 -0.5392 1.5406 22 6 5.7868 0.9236 1.2159 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7082 1.1609 -3.4844 27 1 2.9174 -1.1205 1.0287 28 1 2.2233 -1.6115 3.5325 29 1 0.9537 -0.4716 4.0885 30 1 2.5733 1.0643 4.9977 31 1 3.3415 -0.5133 5.3667 32 1 3.8147 0.3410 0.2989 33 1 5.6069 -0.8660 2.5718 34 1 5.7027 -1.2839 0.7782 35 1 6.2213 1.1407 0.2401 36 1 6.1258 1.5598 2.0335 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300371464.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:16 Heat of formation + Delta-G solvation = -32.344568 kcal Electronic energy + Delta-G solvation = -16535.818310 eV Core-core repulsion = 14020.158016 eV Total energy + Delta-G solvation = -2515.660294 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.09910 -37.49154 -37.04235 -34.56427 -32.10018 -30.29371 -28.15538 -27.24467 -24.49384 -23.24607 -22.33803 -21.86631 -20.50061 -18.66661 -17.46065 -17.18770 -16.63527 -16.50641 -15.65028 -15.30951 -15.14923 -14.65575 -14.26135 -13.55561 -13.26487 -13.11070 -12.84756 -12.76098 -12.53975 -12.40177 -12.29657 -12.20587 -12.04881 -11.78550 -11.55539 -11.13088 -10.96512 -10.85710 -10.61736 -10.50630 -8.97215 -8.12803 -6.25920 1.41097 1.42513 1.51754 2.40959 2.86865 2.93779 3.16007 3.58427 3.71269 3.83841 4.04556 4.13447 4.22224 4.32713 4.48894 4.52067 4.68579 4.78501 4.79752 4.85737 4.90018 5.04411 5.07617 5.15253 5.21462 5.23866 5.31491 5.39604 5.51195 5.69033 5.87538 5.99069 6.23738 6.51598 6.79880 7.02712 7.44405 8.92592 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.030862 B = 0.009111 C = 0.007677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.044972 B = 3072.326790 C = 3646.479481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.220 3.780 3 H -0.026 1.026 4 C -0.530 4.530 5 H 0.056 0.944 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.956 3.044 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.268 1.268 12 N -0.676 5.676 13 C 0.058 3.942 14 H 0.070 0.930 15 C -0.135 4.135 16 C 0.045 3.955 17 O -0.383 6.383 18 C 0.088 3.912 19 H 0.058 0.942 20 C -0.190 4.190 21 C -0.153 4.153 22 C -0.167 4.167 23 H 0.021 0.979 24 H 0.057 0.943 25 H 0.026 0.974 26 H 0.262 0.738 27 H 0.341 0.659 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.158 -0.846 10.957 12.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.111 3.889 3 H -0.008 1.008 4 C -0.569 4.569 5 H 0.074 0.926 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.781 3.219 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.192 1.192 12 N -0.309 5.309 13 C -0.054 4.054 14 H 0.089 0.911 15 C -0.174 4.174 16 C -0.031 4.031 17 O -0.302 6.302 18 C 0.028 3.972 19 H 0.076 0.924 20 C -0.208 4.208 21 C -0.190 4.190 22 C -0.204 4.204 23 H 0.040 0.960 24 H 0.075 0.925 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.162 0.838 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.088 0.912 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.683 -1.004 11.019 12.015 hybrid contribution 0.477 0.446 -1.456 1.596 sum 5.161 -0.558 9.563 10.881 Atomic orbital electron populations 1.21587 0.98086 0.98799 0.98968 1.18870 0.92290 0.90967 0.86729 1.00841 1.21491 1.31443 1.12446 0.91480 0.92588 1.25652 0.95221 0.95602 1.01801 1.70015 1.37423 1.23961 1.24055 0.85594 0.78901 0.78270 0.79100 1.20295 1.21040 1.19223 1.60741 1.33134 1.31928 1.05082 1.22995 0.94766 0.94419 0.93225 0.91136 1.23103 1.00692 1.00321 0.93243 1.23725 0.87066 0.99541 0.92777 1.88791 1.31036 1.87223 1.23138 1.22704 0.92974 0.97401 0.84114 0.92416 1.22688 0.91340 1.07306 0.99489 1.22820 1.00796 0.92449 1.02890 1.22908 0.96868 0.97885 1.02789 0.96047 0.92470 0.95434 0.92911 0.83769 0.90502 0.89116 0.91170 0.86853 0.87324 0.87635 0.88943 0.88837 0.88332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.77 9.18 71.98 0.66 -5.11 16 2 C 0.22 10.99 1.33 44.17 0.06 11.05 16 3 H -0.03 -1.43 7.34 -2.39 -0.02 -1.45 16 4 C -0.53 -28.59 7.88 25.60 0.20 -28.39 16 5 H 0.06 2.99 7.62 -2.91 -0.02 2.97 16 6 C 0.02 0.91 5.30 84.65 0.45 1.36 16 7 N -0.92 -52.22 11.32 21.45 0.24 -51.97 16 8 Si 0.96 43.25 29.54 68.60 2.03 45.28 16 9 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 12 N -0.68 -28.42 5.88 -468.07 -2.75 -31.17 16 13 C 0.06 2.04 3.12 45.94 0.14 2.18 16 14 H 0.07 2.63 7.22 -2.39 -0.02 2.61 16 15 C -0.14 -3.71 6.87 31.90 0.22 -3.49 16 16 C 0.05 1.06 7.72 72.66 0.56 1.62 16 17 O -0.38 -11.59 9.58 -148.98 -1.43 -13.01 16 18 C 0.09 2.98 3.79 31.00 0.12 3.10 16 19 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 20 C -0.19 -6.85 3.95 -10.79 -0.04 -6.89 16 21 C -0.15 -4.74 9.72 30.62 0.30 -4.45 16 22 C -0.17 -5.18 10.18 30.62 0.31 -4.86 16 23 H 0.02 0.94 7.51 -2.39 -0.02 0.92 16 24 H 0.06 3.11 6.07 -2.39 -0.01 3.10 16 25 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 27 H 0.34 14.39 5.63 -89.69 -0.51 13.88 16 28 H 0.08 2.20 8.06 -2.39 -0.02 2.18 16 29 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.11 4.78 4.63 -2.39 -0.01 4.77 16 33 H 0.11 3.14 7.10 -2.39 -0.02 3.12 16 34 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 35 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 36 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -58.17 281.32 1.62 -56.55 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: 0.55 Total: 28.22 kcal Atomic # 6 Polarization: -36.86 SS G_CDS: 2.98 Total: -33.89 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -2.51 Total: -83.14 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -1.43 Total: -13.01 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -58.17 1.62 -56.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300371464.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.201 kcal (2) G-P(sol) polarization free energy of solvation -58.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds