Wall clock time and date at job start Mon Mar 30 2020 03:07:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 H 1.08996 * 109.47399 * 2 1
4 4 C 1.50701 * 109.46821 * 239.99904 * 2 1 3
5 5 H 1.07999 * 119.99996 * 239.99846 * 4 2 1
6 6 C 1.37871 * 119.99990 * 60.00434 * 4 2 1
7 7 N 1.31516 * 120.00066 * 359.97438 * 6 4 2
8 8 Si 1.86800 * 120.00198 * 179.97438 * 6 4 2
9 9 H 1.48503 * 109.46994 * 89.99698 * 8 6 4
10 10 H 1.48503 * 109.47351 * 209.99912 * 8 6 4
11 11 H 1.48501 * 109.46953 * 330.00247 * 8 6 4
12 12 N 1.46899 * 109.46921 * 120.00101 * 2 1 3
13 13 C 1.46896 * 111.00061 * 274.99742 * 12 2 1
14 14 H 1.08998 * 110.54235 * 31.59383 * 13 12 2
15 15 C 1.54817 * 110.48814 * 154.21385 * 13 12 2
16 16 C 1.54994 * 102.12502 * 139.57746 * 15 13 12
17 17 O 1.44385 * 103.48866 * 322.95681 * 16 15 13
18 18 C 1.43745 * 106.97602 * 40.06258 * 17 16 15
19 19 H 1.09000 * 109.87928 * 92.90719 * 18 17 16
20 20 C 1.52999 * 109.87901 * 214.06487 * 18 17 16
21 21 C 1.52998 * 117.49935 * 10.61560 * 20 18 17
22 22 C 1.53002 * 117.49637 * 301.95786 * 20 18 17
23 23 H 1.09002 * 109.47018 * 300.00112 * 1 2 3
24 24 H 1.08992 * 109.46680 * 59.99951 * 1 2 3
25 25 H 1.08999 * 109.46744 * 179.97438 * 1 2 3
26 26 H 0.97001 * 120.00055 * 180.02562 * 7 6 4
27 27 H 1.00903 * 110.99634 * 151.04607 * 12 2 1
28 28 H 1.08996 * 110.90768 * 21.35521 * 15 13 12
29 29 H 1.09005 * 110.90170 * 257.79073 * 15 13 12
30 30 H 1.08993 * 110.62392 * 81.45721 * 16 15 13
31 31 H 1.09000 * 110.61459 * 204.46239 * 16 15 13
32 32 H 1.08999 * 115.54892 * 156.29089 * 20 18 17
33 33 H 1.08996 * 117.50195 * 0.02562 * 21 20 18
34 34 H 1.09004 * 117.49957 * 145.02411 * 21 20 18
35 35 H 1.09003 * 117.50031 * 214.98472 * 22 20 18
36 36 H 1.08999 * 117.50173 * 359.97438 * 22 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.6532 -1.5885 -1.1314
6 6 1.6993 -0.2394 -2.4827
7 7 0.9429 0.8297 -2.6034
8 14 2.3224 -1.1195 -4.0080
9 1 1.3447 -2.1615 -4.4123
10 1 2.4873 -0.1402 -5.1121
11 1 3.6307 -1.7567 -3.7120
12 7 2.0197 -0.6925 1.1994
13 6 2.0825 0.2225 2.3469
14 1 1.3005 0.9786 2.2764
15 6 1.9579 -0.5639 3.6746
16 6 2.9957 0.1524 4.5759
17 8 4.0730 0.4643 3.6666
18 6 3.4709 0.8880 2.4320
19 1 3.3629 1.9726 2.4253
20 6 4.3353 0.4410 1.2514
21 6 5.4738 -0.5392 1.5406
22 6 5.7868 0.9236 1.2159
23 1 -0.3633 0.5139 0.8900
24 1 -0.3632 0.5138 -0.8899
25 1 -0.3633 -1.0277 -0.0005
26 1 0.7082 1.1609 -3.4844
27 1 2.9174 -1.1205 1.0287
28 1 2.2233 -1.6115 3.5325
29 1 0.9537 -0.4716 4.0885
30 1 2.5733 1.0643 4.9977
31 1 3.3415 -0.5133 5.3667
32 1 3.8147 0.3410 0.2989
33 1 5.6069 -0.8660 2.5718
34 1 5.7027 -1.2839 0.7782
35 1 6.2213 1.1407 0.2401
36 1 6.1258 1.5598 2.0335
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000300371464.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:07:16
Heat of formation + Delta-G solvation = -32.344568 kcal
Electronic energy + Delta-G solvation = -16535.818310 eV
Core-core repulsion = 14020.158016 eV
Total energy + Delta-G solvation = -2515.660294 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-41.09910 -37.49154 -37.04235 -34.56427 -32.10018 -30.29371 -28.15538 -27.24467
-24.49384 -23.24607 -22.33803 -21.86631 -20.50061 -18.66661 -17.46065 -17.18770
-16.63527 -16.50641 -15.65028 -15.30951 -15.14923 -14.65575 -14.26135 -13.55561
-13.26487 -13.11070 -12.84756 -12.76098 -12.53975 -12.40177 -12.29657 -12.20587
-12.04881 -11.78550 -11.55539 -11.13088 -10.96512 -10.85710 -10.61736 -10.50630
-8.97215 -8.12803 -6.25920 1.41097 1.42513 1.51754 2.40959 2.86865
2.93779 3.16007 3.58427 3.71269 3.83841 4.04556 4.13447 4.22224
4.32713 4.48894 4.52067 4.68579 4.78501 4.79752 4.85737 4.90018
5.04411 5.07617 5.15253 5.21462 5.23866 5.31491 5.39604 5.51195
5.69033 5.87538 5.99069 6.23738 6.51598 6.79880 7.02712 7.44405
8.92592
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.030862 B = 0.009111 C = 0.007677
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 907.044972 B = 3072.326790 C = 3646.479481
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C 0.220 3.780
3 H -0.026 1.026
4 C -0.530 4.530
5 H 0.056 0.944
6 C 0.017 3.983
7 N -0.915 5.915
8 Si 0.956 3.044
9 H -0.277 1.277
10 H -0.285 1.285
11 H -0.268 1.268
12 N -0.676 5.676
13 C 0.058 3.942
14 H 0.070 0.930
15 C -0.135 4.135
16 C 0.045 3.955
17 O -0.383 6.383
18 C 0.088 3.912
19 H 0.058 0.942
20 C -0.190 4.190
21 C -0.153 4.153
22 C -0.167 4.167
23 H 0.021 0.979
24 H 0.057 0.943
25 H 0.026 0.974
26 H 0.262 0.738
27 H 0.341 0.659
28 H 0.076 0.924
29 H 0.090 0.910
30 H 0.070 0.930
31 H 0.113 0.887
32 H 0.109 0.891
33 H 0.105 0.895
34 H 0.092 0.908
35 H 0.093 0.907
36 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.158 -0.846 10.957 12.140
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C 0.111 3.889
3 H -0.008 1.008
4 C -0.569 4.569
5 H 0.074 0.926
6 C -0.183 4.183
7 N -0.555 5.555
8 Si 0.781 3.219
9 H -0.203 1.203
10 H -0.210 1.210
11 H -0.192 1.192
12 N -0.309 5.309
13 C -0.054 4.054
14 H 0.089 0.911
15 C -0.174 4.174
16 C -0.031 4.031
17 O -0.302 6.302
18 C 0.028 3.972
19 H 0.076 0.924
20 C -0.208 4.208
21 C -0.190 4.190
22 C -0.204 4.204
23 H 0.040 0.960
24 H 0.075 0.925
25 H 0.046 0.954
26 H 0.071 0.929
27 H 0.162 0.838
28 H 0.095 0.905
29 H 0.109 0.891
30 H 0.088 0.912
31 H 0.131 0.869
32 H 0.127 0.873
33 H 0.124 0.876
34 H 0.111 0.889
35 H 0.112 0.888
36 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges 4.683 -1.004 11.019 12.015
hybrid contribution 0.477 0.446 -1.456 1.596
sum 5.161 -0.558 9.563 10.881
Atomic orbital electron populations
1.21587 0.98086 0.98799 0.98968 1.18870 0.92290 0.90967 0.86729
1.00841 1.21491 1.31443 1.12446 0.91480 0.92588 1.25652 0.95221
0.95602 1.01801 1.70015 1.37423 1.23961 1.24055 0.85594 0.78901
0.78270 0.79100 1.20295 1.21040 1.19223 1.60741 1.33134 1.31928
1.05082 1.22995 0.94766 0.94419 0.93225 0.91136 1.23103 1.00692
1.00321 0.93243 1.23725 0.87066 0.99541 0.92777 1.88791 1.31036
1.87223 1.23138 1.22704 0.92974 0.97401 0.84114 0.92416 1.22688
0.91340 1.07306 0.99489 1.22820 1.00796 0.92449 1.02890 1.22908
0.96868 0.97885 1.02789 0.96047 0.92470 0.95434 0.92911 0.83769
0.90502 0.89116 0.91170 0.86853 0.87324 0.87635 0.88943 0.88837
0.88332
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.77 9.18 71.98 0.66 -5.11 16
2 C 0.22 10.99 1.33 44.17 0.06 11.05 16
3 H -0.03 -1.43 7.34 -2.39 -0.02 -1.45 16
4 C -0.53 -28.59 7.88 25.60 0.20 -28.39 16
5 H 0.06 2.99 7.62 -2.91 -0.02 2.97 16
6 C 0.02 0.91 5.30 84.65 0.45 1.36 16
7 N -0.92 -52.22 11.32 21.45 0.24 -51.97 16
8 Si 0.96 43.25 29.54 68.60 2.03 45.28 16
9 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16
10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16
11 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16
12 N -0.68 -28.42 5.88 -468.07 -2.75 -31.17 16
13 C 0.06 2.04 3.12 45.94 0.14 2.18 16
14 H 0.07 2.63 7.22 -2.39 -0.02 2.61 16
15 C -0.14 -3.71 6.87 31.90 0.22 -3.49 16
16 C 0.05 1.06 7.72 72.66 0.56 1.62 16
17 O -0.38 -11.59 9.58 -148.98 -1.43 -13.01 16
18 C 0.09 2.98 3.79 31.00 0.12 3.10 16
19 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16
20 C -0.19 -6.85 3.95 -10.79 -0.04 -6.89 16
21 C -0.15 -4.74 9.72 30.62 0.30 -4.45 16
22 C -0.17 -5.18 10.18 30.62 0.31 -4.86 16
23 H 0.02 0.94 7.51 -2.39 -0.02 0.92 16
24 H 0.06 3.11 6.07 -2.39 -0.01 3.10 16
25 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16
26 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16
27 H 0.34 14.39 5.63 -89.69 -0.51 13.88 16
28 H 0.08 2.20 8.06 -2.39 -0.02 2.18 16
29 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16
30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16
31 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16
32 H 0.11 4.78 4.63 -2.39 -0.01 4.77 16
33 H 0.11 3.14 7.10 -2.39 -0.02 3.12 16
34 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16
35 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16
36 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16
Total: -1.00 -58.17 281.32 1.62 -56.55
By element:
Atomic # 1 Polarization: 27.67 SS G_CDS: 0.55 Total: 28.22 kcal
Atomic # 6 Polarization: -36.86 SS G_CDS: 2.98 Total: -33.89 kcal
Atomic # 7 Polarization: -80.63 SS G_CDS: -2.51 Total: -83.14 kcal
Atomic # 8 Polarization: -11.59 SS G_CDS: -1.43 Total: -13.01 kcal
Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal
Total: -58.17 1.62 -56.55 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000300371464.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.201 kcal
(2) G-P(sol) polarization free energy of solvation -58.166 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.965 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.620 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.545 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.345 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds