Wall clock time and date at job start Mon Mar 30 2020 03:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46901 * 111.00251 * 2 1 4 4 H 1.09010 * 108.95458 * 36.10107 * 3 2 1 5 5 C 1.52821 * 109.03167 * 277.20976 * 3 2 1 6 6 C 1.53313 * 108.11154 * 180.49464 * 5 3 2 7 7 C 1.52595 * 108.42064 * 64.02625 * 6 5 3 8 8 C 1.53084 * 111.00797 * 297.61265 * 7 6 5 9 9 H 1.09002 * 112.37675 * 287.54057 * 8 7 6 10 10 O 1.44883 * 106.21426 * 165.04338 * 8 7 6 11 11 C 1.43439 * 109.43157 * 271.38214 * 10 8 7 12 12 H 1.08998 * 109.92148 * 235.81145 * 11 10 8 13 13 C 1.50701 * 109.83385 * 114.86062 * 11 10 8 14 14 H 1.08002 * 119.99761 * 241.90008 * 13 11 10 15 15 C 1.37871 * 119.99694 * 62.18571 * 13 11 10 16 16 N 1.31523 * 119.99908 * 179.72112 * 15 13 11 17 17 Si 1.86800 * 120.00405 * 359.71709 * 15 13 11 18 18 H 1.48500 * 109.47210 * 90.00069 * 17 15 13 19 19 H 1.48504 * 109.47424 * 210.00300 * 17 15 13 20 20 H 1.48502 * 109.46888 * 330.00390 * 17 15 13 21 21 C 1.54766 * 107.55180 * 355.36113 * 11 10 8 22 22 C 1.50789 * 109.03492 * 154.99273 * 3 2 1 23 23 H 1.08998 * 109.29123 * 295.09208 * 22 3 2 24 24 H 1.09003 * 109.47671 * 300.00378 * 1 2 3 25 25 H 1.09007 * 109.46742 * 60.00427 * 1 2 3 26 26 H 1.09003 * 109.47710 * 179.97438 * 1 2 3 27 27 H 1.00893 * 111.00540 * 236.04125 * 2 1 3 28 28 H 1.08998 * 109.73291 * 60.83921 * 5 3 2 29 29 H 1.09000 * 109.73159 * 300.15251 * 5 3 2 30 30 H 1.09005 * 109.67839 * 304.29287 * 6 5 3 31 31 H 1.08999 * 109.67751 * 183.75869 * 6 5 3 32 32 H 1.09005 * 109.17291 * 177.21890 * 7 6 5 33 33 H 1.08999 * 109.16877 * 58.00539 * 7 6 5 34 34 H 0.96995 * 120.00181 * 179.97438 * 16 15 13 35 35 H 1.08995 * 111.03690 * 97.43736 * 21 11 10 36 36 H 1.08993 * 111.03739 * 221.34034 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3447 2.0005 0.6075 5 6 2.0048 1.9016 -1.4333 6 6 2.5687 3.3271 -1.4104 7 6 4.0195 3.2643 -0.9415 8 6 4.1119 2.7154 0.4846 9 1 3.7608 3.4309 1.2282 10 8 5.5016 2.3627 0.6930 11 6 5.7196 1.0102 0.2678 12 1 6.1440 0.4276 1.0854 13 6 6.6549 0.9901 -0.9137 14 1 6.3177 0.6003 -1.8628 15 6 7.9429 1.4638 -0.7813 16 7 8.7610 1.4412 -1.8109 17 14 8.5262 2.1379 0.8603 18 1 9.1129 1.0377 1.6669 19 1 9.5540 3.1844 0.6288 20 1 7.3752 2.7274 1.5904 21 6 4.3471 0.4219 -0.1389 22 6 3.3777 1.3675 0.6026 23 1 3.3127 1.0765 1.6510 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8306 -0.5261 -0.7812 28 1 0.9888 1.9140 -1.8277 29 1 2.6344 1.2666 -2.0565 30 1 1.9870 3.9410 -0.7227 31 1 2.5250 3.7552 -2.4119 32 1 4.4480 4.2662 -0.9679 33 1 4.5845 2.6164 -1.6117 34 1 9.6670 1.7748 -1.7179 35 1 4.2009 0.4792 -1.2175 36 1 4.2408 -0.6037 0.2143 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306652748.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:06 Heat of formation + Delta-G solvation = -52.041447 kcal Electronic energy + Delta-G solvation = -16786.508284 eV Core-core repulsion = 14269.993870 eV Total energy + Delta-G solvation = -2516.514415 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.93222 -36.55077 -33.87000 -32.34538 -31.02785 -28.93193 -28.28058 -25.09660 -24.26101 -22.04663 -21.20064 -20.06554 -18.58854 -16.74390 -16.01984 -15.68191 -14.72381 -14.49318 -14.13289 -14.00166 -13.52175 -13.06287 -12.80288 -12.53577 -12.26200 -11.94169 -11.79847 -11.31863 -11.20316 -11.04789 -10.73930 -10.65953 -10.54979 -9.92757 -9.80609 -9.71025 -9.38455 -9.17293 -8.47434 -8.27266 -8.04601 -6.02462 -4.09013 3.44494 3.49886 3.76984 4.28341 4.61770 4.83162 4.91696 5.14431 5.30581 5.34124 5.40582 5.49004 5.58809 5.67302 5.70993 5.75319 5.82277 5.93025 5.94009 6.13378 6.23929 6.30100 6.32545 6.45449 6.55477 6.70543 6.74243 6.85192 7.13676 7.19103 7.39079 7.47175 7.74078 8.29400 8.54133 8.98447 9.64006 11.08520 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.040607 B = 0.008811 C = 0.008530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.376558 B = 3177.054329 C = 3281.667598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.690 5.690 3 C 0.106 3.894 4 H 0.069 0.931 5 C -0.149 4.149 6 C -0.112 4.112 7 C -0.138 4.138 8 C 0.084 3.916 9 H 0.079 0.921 10 O -0.382 6.382 11 C 0.166 3.834 12 H 0.036 0.964 13 C -0.529 4.529 14 H 0.072 0.928 15 C 0.083 3.917 16 N -0.898 5.898 17 Si 0.869 3.131 18 H -0.286 1.286 19 H -0.293 1.293 20 H -0.224 1.224 21 C -0.120 4.120 22 C -0.108 4.108 23 H 0.074 0.926 24 H 0.060 0.940 25 H 0.019 0.981 26 H 0.063 0.937 27 H 0.343 0.657 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.263 0.737 35 H 0.068 0.932 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.066 0.879 3.005 15.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.320 5.320 3 C -0.004 4.004 4 H 0.088 0.912 5 C -0.188 4.188 6 C -0.150 4.150 7 C -0.176 4.176 8 C 0.025 3.975 9 H 0.096 0.904 10 O -0.302 6.302 11 C 0.111 3.889 12 H 0.053 0.947 13 C -0.566 4.566 14 H 0.091 0.909 15 C -0.121 4.121 16 N -0.536 5.536 17 Si 0.696 3.304 18 H -0.213 1.213 19 H -0.220 1.220 20 H -0.147 1.147 21 C -0.157 4.157 22 C -0.127 4.127 23 H 0.092 0.908 24 H 0.079 0.921 25 H 0.037 0.963 26 H 0.082 0.918 27 H 0.162 0.838 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.699 0.956 3.730 15.195 hybrid contribution 0.130 0.487 -0.369 0.625 sum -14.569 1.443 3.361 15.021 Atomic orbital electron populations 1.22196 0.88616 1.01357 1.00002 1.60534 1.06902 1.14263 1.50290 1.20940 0.95882 0.88587 0.94994 0.91241 1.22306 1.00223 0.98225 0.98039 1.21426 0.97196 0.95713 1.00648 1.22012 0.95186 1.02205 0.98166 1.22776 0.84940 0.94569 0.95175 0.90351 1.89090 1.22937 1.32707 1.85493 1.20749 0.92944 0.80289 0.94935 0.94661 1.21293 0.95665 1.42528 0.97086 0.90949 1.25010 0.96485 0.93756 0.96829 1.69946 1.06711 1.46217 1.30706 0.86971 0.79360 0.78953 0.85067 1.21297 1.21988 1.14692 1.22851 0.94704 0.98095 1.00085 1.21956 0.93492 0.96927 1.00344 0.90807 0.92077 0.96281 0.91843 0.83846 0.92756 0.91042 0.92636 0.92333 0.92402 0.89363 0.92783 0.91293 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.48 60.06 0.63 0.92 16 2 N -0.69 -8.91 6.25 -115.29 -0.72 -9.64 16 3 C 0.11 1.47 2.16 -68.91 -0.15 1.32 16 4 H 0.07 0.93 7.79 -51.92 -0.40 0.52 16 5 C -0.15 -2.01 4.99 -26.66 -0.13 -2.14 16 6 C -0.11 -1.58 5.93 -26.78 -0.16 -1.74 16 7 C -0.14 -2.50 5.08 -26.90 -0.14 -2.63 16 8 C 0.08 1.58 4.14 -26.20 -0.11 1.47 16 9 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 10 O -0.38 -9.06 7.66 -35.23 -0.27 -9.33 16 11 C 0.17 4.00 2.53 -26.95 -0.07 3.93 16 12 H 0.04 0.88 7.53 -51.93 -0.39 0.49 16 13 C -0.53 -14.93 8.67 -34.44 -0.30 -15.23 16 14 H 0.07 2.19 7.76 -52.49 -0.41 1.78 16 15 C 0.08 2.43 5.47 -17.82 -0.10 2.34 16 16 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 17 Si 0.87 22.48 27.01 -169.99 -4.59 17.89 16 18 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 19 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 20 H -0.22 -5.68 5.41 56.52 0.31 -5.38 16 21 C -0.12 -2.34 4.82 -25.07 -0.12 -2.46 16 22 C -0.11 -1.83 2.66 -90.51 -0.24 -2.07 16 23 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 24 H 0.06 0.62 8.04 -51.93 -0.42 0.20 16 25 H 0.02 0.19 7.28 -51.93 -0.38 -0.19 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.34 4.37 8.29 -39.30 -0.33 4.05 16 28 H 0.05 0.65 7.31 -51.93 -0.38 0.27 16 29 H 0.07 1.06 6.67 -51.93 -0.35 0.71 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.09 1.89 6.35 -51.93 -0.33 1.56 16 34 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 35 H 0.07 1.38 5.53 -51.93 -0.29 1.09 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 269.28 15.07 4.06 4.06 Total: -1.00 -30.62 269.28 -7.49 -38.11 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.86 Total: 2.30 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -0.88 Total: -16.30 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.05 Total: -36.73 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.27 Total: -9.33 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.59 Total: 17.89 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.62 -7.49 -38.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306652748.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.930 kcal (2) G-P(sol) polarization free energy of solvation -30.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds