Wall clock time and date at job start Mon Mar 30 2020 03:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46901 * 111.00251 * 2 1 4 4 H 1.09010 * 108.95458 * 36.10107 * 3 2 1 5 5 C 1.52821 * 109.03167 * 277.20976 * 3 2 1 6 6 C 1.53313 * 108.11154 * 180.49464 * 5 3 2 7 7 C 1.52595 * 108.42064 * 64.02625 * 6 5 3 8 8 C 1.53084 * 111.00797 * 297.61265 * 7 6 5 9 9 H 1.09002 * 112.37675 * 287.54057 * 8 7 6 10 10 O 1.44883 * 106.21426 * 165.04338 * 8 7 6 11 11 C 1.43439 * 109.43157 * 271.38214 * 10 8 7 12 12 H 1.08998 * 109.92148 * 235.81145 * 11 10 8 13 13 C 1.50701 * 109.83385 * 114.86062 * 11 10 8 14 14 H 1.08002 * 119.99761 * 241.90008 * 13 11 10 15 15 C 1.37871 * 119.99694 * 62.18571 * 13 11 10 16 16 N 1.31523 * 119.99908 * 179.72112 * 15 13 11 17 17 Si 1.86800 * 120.00405 * 359.71709 * 15 13 11 18 18 H 1.48500 * 109.47210 * 90.00069 * 17 15 13 19 19 H 1.48504 * 109.47424 * 210.00300 * 17 15 13 20 20 H 1.48502 * 109.46888 * 330.00390 * 17 15 13 21 21 C 1.54766 * 107.55180 * 355.36113 * 11 10 8 22 22 C 1.50789 * 109.03492 * 154.99273 * 3 2 1 23 23 H 1.08998 * 109.29123 * 295.09208 * 22 3 2 24 24 H 1.09003 * 109.47671 * 300.00378 * 1 2 3 25 25 H 1.09007 * 109.46742 * 60.00427 * 1 2 3 26 26 H 1.09003 * 109.47710 * 179.97438 * 1 2 3 27 27 H 1.00893 * 111.00540 * 236.04125 * 2 1 3 28 28 H 1.08998 * 109.73291 * 60.83921 * 5 3 2 29 29 H 1.09000 * 109.73159 * 300.15251 * 5 3 2 30 30 H 1.09005 * 109.67839 * 304.29287 * 6 5 3 31 31 H 1.08999 * 109.67751 * 183.75869 * 6 5 3 32 32 H 1.09005 * 109.17291 * 177.21890 * 7 6 5 33 33 H 1.08999 * 109.16877 * 58.00539 * 7 6 5 34 34 H 0.96995 * 120.00181 * 179.97438 * 16 15 13 35 35 H 1.08995 * 111.03690 * 97.43736 * 21 11 10 36 36 H 1.08993 * 111.03739 * 221.34034 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3447 2.0005 0.6075 5 6 2.0048 1.9016 -1.4333 6 6 2.5687 3.3271 -1.4104 7 6 4.0195 3.2643 -0.9415 8 6 4.1119 2.7154 0.4846 9 1 3.7608 3.4309 1.2282 10 8 5.5016 2.3627 0.6930 11 6 5.7196 1.0102 0.2678 12 1 6.1440 0.4276 1.0854 13 6 6.6549 0.9901 -0.9137 14 1 6.3177 0.6003 -1.8628 15 6 7.9429 1.4638 -0.7813 16 7 8.7610 1.4412 -1.8109 17 14 8.5262 2.1379 0.8603 18 1 9.1129 1.0377 1.6669 19 1 9.5540 3.1844 0.6288 20 1 7.3752 2.7274 1.5904 21 6 4.3471 0.4219 -0.1389 22 6 3.3777 1.3675 0.6026 23 1 3.3127 1.0765 1.6510 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8306 -0.5261 -0.7812 28 1 0.9888 1.9140 -1.8277 29 1 2.6344 1.2666 -2.0565 30 1 1.9870 3.9410 -0.7227 31 1 2.5250 3.7552 -2.4119 32 1 4.4480 4.2662 -0.9679 33 1 4.5845 2.6164 -1.6117 34 1 9.6670 1.7748 -1.7179 35 1 4.2009 0.4792 -1.2175 36 1 4.2408 -0.6037 0.2143 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306652748.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:06 Heat of formation + Delta-G solvation = -73.720171 kcal Electronic energy + Delta-G solvation = -16787.448344 eV Core-core repulsion = 14269.993870 eV Total energy + Delta-G solvation = -2517.454475 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.38276 -37.91970 -35.17676 -34.46007 -32.53646 -30.64642 -29.59668 -26.74787 -25.44527 -23.32949 -22.61227 -21.81486 -19.98769 -18.83876 -17.31614 -17.26354 -16.38317 -15.76782 -15.49293 -15.43706 -14.95614 -14.64273 -14.37237 -13.94501 -13.68713 -13.50131 -13.02478 -12.89672 -12.51485 -12.46879 -12.34913 -12.26141 -12.11569 -11.72089 -11.42996 -11.19559 -11.04510 -10.88597 -10.67158 -9.92616 -9.23559 -8.30622 -6.39987 1.37138 1.39184 1.69898 2.45439 2.98670 3.24154 3.45473 3.73432 3.97575 4.14674 4.26169 4.27765 4.30581 4.42432 4.53023 4.60692 4.62140 4.68595 4.71688 4.84865 5.00634 5.05433 5.08603 5.11283 5.15870 5.28359 5.36573 5.41432 5.57407 5.64219 5.70669 6.15850 6.20966 6.49100 6.53875 6.75698 7.36401 8.83950 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.040607 B = 0.008811 C = 0.008530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.376558 B = 3177.054329 C = 3281.667598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.701 5.701 3 C 0.113 3.887 4 H 0.089 0.911 5 C -0.144 4.144 6 C -0.104 4.104 7 C -0.134 4.134 8 C 0.075 3.925 9 H 0.106 0.894 10 O -0.406 6.406 11 C 0.166 3.834 12 H 0.031 0.969 13 C -0.527 4.527 14 H 0.036 0.964 15 C 0.024 3.976 16 N -0.945 5.945 17 Si 0.933 3.067 18 H -0.278 1.278 19 H -0.294 1.294 20 H -0.215 1.215 21 C -0.110 4.110 22 C -0.093 4.093 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.028 0.972 26 H 0.073 0.927 27 H 0.342 0.658 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.044 0.956 34 H 0.264 0.736 35 H 0.058 0.942 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.707 1.464 4.622 18.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.331 5.331 3 C 0.003 3.997 4 H 0.107 0.893 5 C -0.183 4.183 6 C -0.142 4.142 7 C -0.172 4.172 8 C 0.017 3.983 9 H 0.124 0.876 10 O -0.327 6.327 11 C 0.110 3.890 12 H 0.048 0.952 13 C -0.564 4.564 14 H 0.054 0.946 15 C -0.174 4.174 16 N -0.585 5.585 17 Si 0.758 3.242 18 H -0.205 1.205 19 H -0.221 1.221 20 H -0.137 1.137 21 C -0.148 4.148 22 C -0.113 4.113 23 H 0.095 0.905 24 H 0.085 0.915 25 H 0.046 0.954 26 H 0.092 0.908 27 H 0.160 0.840 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.369 1.534 5.351 18.239 hybrid contribution 0.894 0.285 -0.938 1.327 sum -16.475 1.820 4.413 17.153 Atomic orbital electron populations 1.22257 0.86717 1.02389 1.00694 1.60491 1.08687 1.13448 1.50437 1.20833 0.94057 0.89735 0.95104 0.89317 1.22265 1.01139 0.97190 0.97689 1.21386 0.94425 0.96799 1.01589 1.21910 0.97614 1.00550 0.97138 1.23150 0.82817 0.96192 0.96118 0.87615 1.88971 1.26385 1.32044 1.85337 1.20600 0.94400 0.81106 0.92898 0.95160 1.21584 0.96529 1.41096 0.97218 0.94613 1.25866 0.96879 0.94459 1.00201 1.70076 1.07246 1.48314 1.32890 0.85983 0.78884 0.78376 0.80999 1.20454 1.22077 1.13749 1.22699 0.93162 0.99116 0.99845 1.21874 0.94569 0.94515 1.00306 0.90479 0.91456 0.95362 0.90796 0.83992 0.90177 0.93130 0.90035 0.91590 0.93138 0.93707 0.92719 0.92381 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.48 127.69 1.34 1.82 16 2 N -0.70 -15.92 6.25 -518.68 -3.24 -19.17 16 3 C 0.11 2.75 2.16 44.14 0.10 2.85 16 4 H 0.09 1.91 7.79 -2.38 -0.02 1.89 16 5 C -0.14 -3.48 4.99 30.64 0.15 -3.33 16 6 C -0.10 -2.66 5.93 30.56 0.18 -2.48 16 7 C -0.13 -4.75 5.08 30.49 0.15 -4.60 16 8 C 0.07 2.67 4.14 30.94 0.13 2.80 16 9 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 10 O -0.41 -18.99 7.66 -148.98 -1.14 -20.13 16 11 C 0.17 8.02 2.53 30.45 0.08 8.10 16 12 H 0.03 1.50 7.53 -2.39 -0.02 1.48 16 13 C -0.53 -30.85 8.67 25.60 0.22 -30.63 16 14 H 0.04 2.29 7.76 -2.91 -0.02 2.27 16 15 C 0.02 1.47 5.47 84.65 0.46 1.94 16 16 N -0.94 -60.80 13.96 21.45 0.30 -60.50 16 17 Si 0.93 47.27 27.01 68.60 1.85 49.13 16 18 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 19 H -0.29 -14.80 7.11 99.48 0.71 -14.09 16 20 H -0.21 -10.49 5.41 99.48 0.54 -9.95 16 21 C -0.11 -4.28 4.82 31.67 0.15 -4.12 16 22 C -0.09 -2.96 2.66 -10.72 -0.03 -2.99 16 23 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 24 H 0.07 1.07 8.04 -2.39 -0.02 1.05 16 25 H 0.03 0.43 7.28 -2.38 -0.02 0.42 16 26 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.34 7.95 8.29 -89.70 -0.74 7.20 16 28 H 0.08 1.57 7.31 -2.39 -0.02 1.55 16 29 H 0.05 1.45 6.67 -2.39 -0.02 1.43 16 30 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.04 1.97 6.35 -2.39 -0.02 1.95 16 34 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 35 H 0.06 2.37 5.53 -2.39 -0.01 2.35 16 36 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -67.87 269.28 0.85 -67.02 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.14 Total: 14.29 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: 2.94 Total: -30.64 kcal Atomic # 7 Polarization: -76.72 SS G_CDS: -2.94 Total: -79.67 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -1.14 Total: -20.13 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 1.85 Total: 49.13 kcal Total: -67.87 0.85 -67.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306652748.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.696 kcal (2) G-P(sol) polarization free energy of solvation -67.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds