Wall clock time and date at job start Mon Mar 30 2020 03:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46554 * 2 1 4 4 C 1.50702 * 109.47083 * 240.01053 * 2 1 3 5 5 H 1.08002 * 119.99802 * 239.99517 * 4 2 1 6 6 C 1.37877 * 120.00250 * 59.99226 * 4 2 1 7 7 N 1.31520 * 120.00052 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00088 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47338 * 89.99925 * 8 6 4 10 10 H 1.48503 * 109.47036 * 209.99952 * 8 6 4 11 11 H 1.48502 * 109.47084 * 330.00075 * 8 6 4 12 12 N 1.46899 * 109.47460 * 120.00463 * 2 1 3 13 13 C 1.46894 * 110.99867 * 274.99972 * 12 2 1 14 14 H 1.08994 * 112.87690 * 23.70284 * 13 12 2 15 15 C 1.53912 * 113.64946 * 252.28205 * 13 12 2 16 16 C 1.53322 * 86.50058 * 219.29619 * 15 13 12 17 17 H 1.09000 * 111.13527 * 273.99391 * 16 15 13 18 18 O 1.40548 * 115.45689 * 145.78889 * 16 15 13 19 19 C 1.41565 * 119.50126 * 292.07643 * 18 16 15 20 20 C 1.52795 * 110.90528 * 312.25704 * 19 18 16 21 21 C 1.53185 * 108.61187 * 61.14872 * 20 19 18 22 22 C 1.52918 * 87.54989 * 26.43710 * 16 15 13 23 23 H 1.08999 * 114.71874 * 218.41425 * 22 16 15 24 24 H 1.09003 * 109.46925 * 299.98749 * 1 2 3 25 25 H 1.08995 * 109.47644 * 59.99555 * 1 2 3 26 26 H 1.09007 * 109.46819 * 179.97438 * 1 2 3 27 27 H 0.96996 * 119.99924 * 179.97438 * 7 6 4 28 28 H 1.00895 * 110.99730 * 38.95812 * 12 2 1 29 29 H 1.09000 * 113.70477 * 333.69821 * 15 13 12 30 30 H 1.08996 * 113.70343 * 104.79219 * 15 13 12 31 31 H 1.08997 * 109.18794 * 72.62644 * 19 18 16 32 32 H 1.08998 * 109.18962 * 191.93587 * 19 18 16 33 33 H 1.08998 * 109.60746 * 180.88833 * 20 19 18 34 34 H 1.09002 * 109.61065 * 301.23306 * 20 19 18 35 35 H 1.09000 * 109.58612 * 59.37312 * 21 20 19 36 36 H 1.09001 * 109.58175 * 179.64563 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7102 -1.2306 5 1 2.6533 -1.5883 -1.1316 6 6 1.6992 -0.2390 -2.4828 7 7 0.9433 0.8305 -2.6033 8 14 2.3213 -1.1198 -4.0082 9 1 1.3428 -2.1612 -4.4122 10 1 2.4863 -0.1407 -5.1124 11 1 3.6293 -1.7577 -3.7125 12 7 2.0198 -0.6926 1.1993 13 6 2.0826 0.2224 2.3468 14 1 1.4083 1.0730 2.2479 15 6 3.5165 0.6121 2.7479 16 6 3.0389 0.5042 4.2009 17 1 2.5893 1.4385 4.5372 18 8 3.9949 0.0343 5.1177 19 6 4.4362 -1.3085 5.0380 20 6 3.2514 -2.2653 4.9139 21 6 2.4879 -1.9338 3.6279 22 6 1.9845 -0.4893 3.7115 23 1 1.0124 -0.3979 4.1961 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7092 1.1622 -3.4843 28 1 1.4497 -1.4980 1.4098 29 1 4.2651 -0.1321 2.4762 30 1 3.7953 1.6230 2.4504 31 1 5.0815 -1.4224 4.1670 32 1 5.0014 -1.5538 5.9371 33 1 3.6137 -3.2924 4.8701 34 1 2.5931 -2.1460 5.7745 35 1 3.1526 -2.0402 2.7706 36 1 1.6416 -2.6123 3.5204 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307433192.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:51 Heat of formation + Delta-G solvation = -28.674910 kcal Electronic energy + Delta-G solvation = -16226.813471 eV Core-core repulsion = 13711.312306 eV Total energy + Delta-G solvation = -2515.501166 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.53155 -36.55949 -34.39234 -32.99400 -31.72955 -27.81975 -27.16190 -25.15248 -24.20298 -22.93546 -21.15593 -20.13861 -17.94893 -16.67399 -16.34289 -15.82263 -15.03046 -14.87907 -14.41726 -13.88878 -13.53792 -13.06105 -12.68633 -12.60161 -11.86499 -11.74048 -11.52343 -11.37163 -11.01440 -10.94721 -10.85693 -10.63901 -10.30776 -10.12587 -10.10534 -9.94379 -9.53554 -9.02393 -8.90830 -8.35404 -7.24136 -5.97712 -4.00826 3.32604 3.39046 3.43597 3.88318 4.44696 4.68471 4.86993 4.89632 5.00892 5.13034 5.33776 5.35745 5.38791 5.55363 5.62073 5.76928 5.92156 5.99109 6.02565 6.08378 6.12806 6.39210 6.49482 6.57366 6.68404 6.77252 6.84170 7.11480 7.39781 7.68936 7.74639 7.90810 8.30054 8.55111 8.63687 9.06407 9.64515 11.09457 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.044349 B = 0.006488 C = 0.006263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.205002 B = 4314.594395 C = 4469.983788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.210 3.790 3 H 0.033 0.967 4 C -0.494 4.494 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.667 5.667 13 C 0.070 3.930 14 H 0.066 0.934 15 C -0.155 4.155 16 C 0.086 3.914 17 H 0.112 0.888 18 O -0.380 6.380 19 C 0.072 3.928 20 C -0.155 4.155 21 C -0.106 4.106 22 C -0.147 4.147 23 H 0.074 0.926 24 H 0.004 0.996 25 H 0.088 0.912 26 H 0.027 0.973 27 H 0.259 0.741 28 H 0.327 0.673 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.723 -3.305 13.212 13.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.102 3.898 3 H 0.051 0.949 4 C -0.533 4.533 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.297 5.297 13 C -0.041 4.041 14 H 0.083 0.917 15 C -0.194 4.194 16 C 0.027 3.973 17 H 0.129 0.871 18 O -0.298 6.298 19 C -0.005 4.005 20 C -0.193 4.193 21 C -0.144 4.144 22 C -0.166 4.166 23 H 0.093 0.907 24 H 0.023 0.977 25 H 0.107 0.893 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.145 0.855 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.385 -2.994 13.013 13.775 hybrid contribution -0.951 -0.452 -0.998 1.450 sum 2.435 -3.446 12.015 12.734 Atomic orbital electron populations 1.22446 1.00804 0.99112 1.00417 1.19228 0.89467 0.94448 0.86671 0.94862 1.21152 1.30119 1.12358 0.89649 0.92021 1.24953 0.95381 0.95199 0.99038 1.69885 1.37428 1.23179 1.23302 0.86520 0.79216 0.79239 0.82535 1.20871 1.21381 1.19909 1.60930 1.57410 1.08549 1.02859 1.22849 0.96048 0.95750 0.89453 0.91664 1.23659 0.98589 1.01942 0.95172 1.22820 0.89030 0.96543 0.88865 0.87058 1.86629 1.59267 1.27610 1.56344 1.22207 0.95276 0.81549 1.01454 1.22077 0.98513 0.99716 0.99003 1.21393 1.00651 0.94241 0.98077 1.23312 0.98947 0.96100 0.98273 0.90716 0.97719 0.89324 0.95426 0.93102 0.85533 0.89360 0.91729 0.93455 0.89589 0.90943 0.91614 0.89121 0.91752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.05 8.93 37.16 0.33 -3.72 16 2 C 0.21 5.25 2.42 -68.86 -0.17 5.08 16 3 H 0.03 0.93 7.84 -51.93 -0.41 0.52 16 4 C -0.49 -13.68 8.84 -34.44 -0.30 -13.99 16 5 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -25.83 11.32 55.43 0.63 -25.21 16 8 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.67 -13.85 5.22 -99.81 -0.52 -14.37 16 13 C 0.07 1.24 3.68 -66.62 -0.25 1.00 16 14 H 0.07 1.21 7.49 -51.93 -0.39 0.83 16 15 C -0.15 -2.57 7.24 -26.09 -0.19 -2.76 16 16 C 0.09 1.24 4.64 -26.63 -0.12 1.12 16 17 H 0.11 1.48 8.14 -51.93 -0.42 1.05 16 18 O -0.38 -5.53 10.37 -34.08 -0.35 -5.89 16 19 C 0.07 0.87 6.67 37.05 0.25 1.12 16 20 C -0.16 -1.79 6.11 -26.74 -0.16 -1.95 16 21 C -0.11 -1.45 4.42 -26.53 -0.12 -1.57 16 22 C -0.15 -2.15 4.26 -89.92 -0.38 -2.53 16 23 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.00 0.08 7.74 -51.93 -0.40 -0.32 16 25 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 26 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.33 6.47 7.40 -39.29 -0.29 6.18 16 29 H 0.09 1.55 7.17 -51.93 -0.37 1.18 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.60 7.72 -51.93 -0.40 0.20 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.09 1.41 6.51 -51.93 -0.34 1.07 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 279.48 15.07 4.21 4.21 Total: -1.00 -28.53 279.48 -8.11 -36.63 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -5.84 Total: 4.82 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -1.21 Total: -16.77 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.11 Total: -39.57 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.35 Total: -5.89 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.53 -8.11 -36.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307433192.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.957 kcal (2) G-P(sol) polarization free energy of solvation -28.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds