Wall clock time and date at job start Mon Mar 30 2020 03:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46554 * 2 1 4 4 C 1.50702 * 109.47083 * 240.01053 * 2 1 3 5 5 H 1.08002 * 119.99802 * 239.99517 * 4 2 1 6 6 C 1.37877 * 120.00250 * 59.99226 * 4 2 1 7 7 N 1.31520 * 120.00052 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00088 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47338 * 89.99925 * 8 6 4 10 10 H 1.48503 * 109.47036 * 209.99952 * 8 6 4 11 11 H 1.48502 * 109.47084 * 330.00075 * 8 6 4 12 12 N 1.46899 * 109.47460 * 120.00463 * 2 1 3 13 13 C 1.46894 * 110.99867 * 274.99972 * 12 2 1 14 14 H 1.08994 * 112.87690 * 23.70284 * 13 12 2 15 15 C 1.53912 * 113.64946 * 252.28205 * 13 12 2 16 16 C 1.53322 * 86.50058 * 219.29619 * 15 13 12 17 17 H 1.09000 * 111.13527 * 273.99391 * 16 15 13 18 18 O 1.40548 * 115.45689 * 145.78889 * 16 15 13 19 19 C 1.41565 * 119.50126 * 292.07643 * 18 16 15 20 20 C 1.52795 * 110.90528 * 312.25704 * 19 18 16 21 21 C 1.53185 * 108.61187 * 61.14872 * 20 19 18 22 22 C 1.52918 * 87.54989 * 26.43710 * 16 15 13 23 23 H 1.08999 * 114.71874 * 218.41425 * 22 16 15 24 24 H 1.09003 * 109.46925 * 299.98749 * 1 2 3 25 25 H 1.08995 * 109.47644 * 59.99555 * 1 2 3 26 26 H 1.09007 * 109.46819 * 179.97438 * 1 2 3 27 27 H 0.96996 * 119.99924 * 179.97438 * 7 6 4 28 28 H 1.00895 * 110.99730 * 38.95812 * 12 2 1 29 29 H 1.09000 * 113.70477 * 333.69821 * 15 13 12 30 30 H 1.08996 * 113.70343 * 104.79219 * 15 13 12 31 31 H 1.08997 * 109.18794 * 72.62644 * 19 18 16 32 32 H 1.08998 * 109.18962 * 191.93587 * 19 18 16 33 33 H 1.08998 * 109.60746 * 180.88833 * 20 19 18 34 34 H 1.09002 * 109.61065 * 301.23306 * 20 19 18 35 35 H 1.09000 * 109.58612 * 59.37312 * 21 20 19 36 36 H 1.09001 * 109.58175 * 179.64563 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7102 -1.2306 5 1 2.6533 -1.5883 -1.1316 6 6 1.6992 -0.2390 -2.4828 7 7 0.9433 0.8305 -2.6033 8 14 2.3213 -1.1198 -4.0082 9 1 1.3428 -2.1612 -4.4122 10 1 2.4863 -0.1407 -5.1124 11 1 3.6293 -1.7577 -3.7125 12 7 2.0198 -0.6926 1.1993 13 6 2.0826 0.2224 2.3468 14 1 1.4083 1.0730 2.2479 15 6 3.5165 0.6121 2.7479 16 6 3.0389 0.5042 4.2009 17 1 2.5893 1.4385 4.5372 18 8 3.9949 0.0343 5.1177 19 6 4.4362 -1.3085 5.0380 20 6 3.2514 -2.2653 4.9139 21 6 2.4879 -1.9338 3.6279 22 6 1.9845 -0.4893 3.7115 23 1 1.0124 -0.3979 4.1961 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7092 1.1622 -3.4843 28 1 1.4497 -1.4980 1.4098 29 1 4.2651 -0.1321 2.4762 30 1 3.7953 1.6230 2.4504 31 1 5.0815 -1.4224 4.1670 32 1 5.0014 -1.5538 5.9371 33 1 3.6137 -3.2924 4.8701 34 1 2.5931 -2.1460 5.7745 35 1 3.1526 -2.0402 2.7706 36 1 1.6416 -2.6123 3.5204 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307433192.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:51 Heat of formation + Delta-G solvation = -46.661650 kcal Electronic energy + Delta-G solvation = -16227.593435 eV Core-core repulsion = 13711.312306 eV Total energy + Delta-G solvation = -2516.281129 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.74152 -37.99581 -36.09951 -34.03253 -33.68266 -29.60665 -28.31598 -27.24855 -25.43903 -24.17451 -22.50379 -21.95488 -19.17752 -18.33424 -17.83752 -16.99966 -16.83954 -16.18851 -15.88710 -15.25828 -14.87856 -14.57280 -14.46556 -13.74511 -13.61229 -13.14854 -13.09744 -12.91916 -12.74330 -12.51721 -12.35367 -12.18236 -12.09296 -11.84597 -11.53521 -11.24846 -11.12258 -10.66025 -10.48889 -10.15970 -8.94494 -8.10299 -6.21365 1.41800 1.42613 1.53553 2.43251 2.82561 3.18131 3.46546 3.63828 3.67137 3.93870 3.98368 4.08156 4.21615 4.39858 4.59058 4.63225 4.69036 4.72971 4.85815 4.86689 4.96880 4.99754 5.06952 5.09549 5.11568 5.30829 5.34241 5.45983 5.56820 5.68981 5.84779 6.28561 6.59601 6.68566 6.85681 6.95408 7.48908 8.95402 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.044349 B = 0.006488 C = 0.006263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.205002 B = 4314.594395 C = 4469.983788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H -0.002 1.002 4 C -0.514 4.514 5 H 0.054 0.946 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.960 3.040 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.271 1.271 12 N -0.667 5.667 13 C 0.058 3.942 14 H 0.055 0.945 15 C -0.158 4.158 16 C 0.097 3.903 17 H 0.127 0.873 18 O -0.389 6.389 19 C 0.063 3.937 20 C -0.147 4.147 21 C -0.108 4.108 22 C -0.132 4.132 23 H 0.090 0.910 24 H 0.024 0.976 25 H 0.060 0.940 26 H 0.032 0.968 27 H 0.260 0.740 28 H 0.333 0.667 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.038 0.962 32 H 0.112 0.888 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.845 -4.461 14.469 15.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.107 3.893 3 H 0.016 0.984 4 C -0.553 4.553 5 H 0.072 0.928 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.786 3.214 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.297 5.297 13 C -0.053 4.053 14 H 0.073 0.927 15 C -0.197 4.197 16 C 0.039 3.961 17 H 0.144 0.856 18 O -0.307 6.307 19 C -0.013 4.013 20 C -0.184 4.184 21 C -0.145 4.145 22 C -0.152 4.152 23 H 0.109 0.891 24 H 0.043 0.957 25 H 0.079 0.921 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.151 0.849 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.130 0.870 33 H 0.110 0.890 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.512 -4.160 14.290 15.292 hybrid contribution -0.951 -0.079 -1.360 1.661 sum 2.561 -4.239 12.931 13.847 Atomic orbital electron populations 1.22248 1.00039 0.99209 0.99971 1.18961 0.89917 0.92557 0.87873 0.98418 1.21459 1.30309 1.12394 0.91116 0.92753 1.25728 0.95512 0.95875 1.01930 1.70015 1.38179 1.24271 1.23946 0.85524 0.78780 0.78229 0.78870 1.19984 1.21041 1.19595 1.60793 1.57110 1.08987 1.02782 1.22936 0.96684 0.95547 0.90114 0.92695 1.23652 0.97610 1.01064 0.97398 1.22732 0.88705 0.97189 0.87483 0.85593 1.86635 1.59169 1.29041 1.55866 1.22448 0.95728 0.80718 1.02409 1.22038 0.97984 1.00555 0.97863 1.21385 1.00810 0.93743 0.98583 1.23267 0.99850 0.96508 0.95551 0.89131 0.95692 0.92130 0.94891 0.93047 0.84880 0.90638 0.92430 0.94405 0.86968 0.88985 0.90570 0.91410 0.90894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.51 8.93 71.98 0.64 -6.87 16 2 C 0.22 11.01 2.42 44.17 0.11 11.12 16 3 H 0.00 -0.12 7.84 -2.39 -0.02 -0.14 16 4 C -0.51 -28.87 8.84 25.60 0.23 -28.64 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 6 C 0.01 0.42 5.30 84.65 0.45 0.87 16 7 N -0.92 -53.92 11.32 21.45 0.24 -53.67 16 8 Si 0.96 44.40 29.54 68.60 2.03 46.43 16 9 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 N -0.67 -27.83 5.22 -469.68 -2.45 -30.28 16 13 C 0.06 2.04 3.68 45.63 0.17 2.21 16 14 H 0.06 2.05 7.49 -2.39 -0.02 2.03 16 15 C -0.16 -5.27 7.24 31.01 0.22 -5.05 16 16 C 0.10 2.67 4.64 30.66 0.14 2.81 16 17 H 0.13 3.08 8.14 -2.39 -0.02 3.06 16 18 O -0.39 -10.45 10.37 -144.85 -1.50 -11.96 16 19 C 0.06 1.38 6.67 71.91 0.48 1.86 16 20 C -0.15 -2.93 6.11 30.59 0.19 -2.75 16 21 C -0.11 -2.73 4.42 30.72 0.14 -2.59 16 22 C -0.13 -3.63 4.26 -10.34 -0.04 -3.67 16 23 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.02 1.06 7.74 -2.39 -0.02 1.04 16 25 H 0.06 3.29 6.07 -2.39 -0.01 3.27 16 26 H 0.03 1.51 8.13 -2.38 -0.02 1.49 16 27 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 28 H 0.33 13.03 7.40 -89.70 -0.66 12.36 16 29 H 0.08 2.69 7.17 -2.39 -0.02 2.68 16 30 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.04 0.90 7.72 -2.39 -0.02 0.88 16 32 H 0.11 1.88 8.14 -2.39 -0.02 1.87 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.07 2.05 6.51 -2.39 -0.02 2.04 16 36 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -60.95 279.48 1.42 -59.53 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: 0.39 Total: 20.65 kcal Atomic # 6 Polarization: -33.42 SS G_CDS: 2.72 Total: -30.70 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -2.21 Total: -83.95 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -1.50 Total: -11.96 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -60.95 1.42 -59.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307433192.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.870 kcal (2) G-P(sol) polarization free energy of solvation -60.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds