Wall clock time and date at job start Mon Mar 30 2020 03:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47339 * 2 1 4 4 C 1.50694 * 109.47174 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 240.00081 * 4 2 1 6 6 C 1.37885 * 119.99902 * 59.99918 * 4 2 1 7 7 N 1.31516 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99854 * 179.72538 * 6 4 2 9 9 H 1.48498 * 109.46909 * 90.00086 * 8 6 4 10 10 H 1.48497 * 109.46701 * 209.99996 * 8 6 4 11 11 H 1.48500 * 109.46867 * 330.00101 * 8 6 4 12 12 N 1.46903 * 109.47120 * 119.99748 * 2 1 3 13 13 C 1.46898 * 111.00159 * 275.00019 * 12 2 1 14 14 H 1.09003 * 112.92325 * 25.33281 * 13 12 2 15 15 C 1.53909 * 113.71370 * 253.83768 * 13 12 2 16 16 C 1.54457 * 86.77868 * 219.47687 * 15 13 12 17 17 H 1.08996 * 114.87741 * 141.03029 * 16 15 13 18 18 O 1.42846 * 111.34350 * 271.23448 * 16 15 13 19 19 C 1.42857 * 113.83522 * 145.19993 * 18 16 15 20 20 C 1.52663 * 108.91927 * 295.59964 * 19 18 16 21 21 C 1.50851 * 110.51609 * 61.28786 * 20 19 18 22 22 C 1.51029 * 114.03471 * 315.22319 * 21 20 19 23 23 H 1.08996 * 111.62029 * 161.00765 * 22 21 20 24 24 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47223 * 299.99995 * 1 2 3 26 26 H 1.08995 * 109.47095 * 60.00224 * 1 2 3 27 27 H 0.97001 * 119.99646 * 180.02562 * 7 6 4 28 28 H 1.00898 * 110.99943 * 151.04803 * 12 2 1 29 29 H 1.09005 * 113.64640 * 333.93075 * 15 13 12 30 30 H 1.09000 * 113.65520 * 104.94812 * 15 13 12 31 31 H 1.08998 * 109.56527 * 55.43804 * 19 18 16 32 32 H 1.09001 * 109.55815 * 175.66255 * 19 18 16 33 33 H 1.08999 * 109.22123 * 181.62205 * 20 19 18 34 34 H 1.08997 * 109.22862 * 301.01358 * 20 19 18 35 35 H 1.08996 * 108.01980 * 194.28423 * 21 20 19 36 36 H 1.09004 * 108.73444 * 76.67303 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3282 -1.1156 -4.0079 9 1 1.3553 -2.1611 -4.4148 10 1 2.4907 -0.1345 -5.1107 11 1 3.6387 -1.7477 -3.7105 12 7 2.0197 -0.6925 1.1995 13 6 2.0825 0.2226 2.3469 14 1 1.3881 1.0585 2.2618 15 6 3.5137 0.6432 2.7256 16 6 3.0668 0.5199 4.1989 17 1 3.8123 0.0935 4.8701 18 8 2.5167 1.7474 4.6798 19 6 1.4447 1.5751 5.6082 20 6 0.2762 0.8992 4.8952 21 6 0.6825 -0.4619 4.3875 22 6 2.0297 -0.4870 3.7053 23 1 2.4345 -1.4977 3.6528 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.7089 1.1613 -3.4844 28 1 2.9173 -1.1204 1.0288 29 1 4.2737 -0.0830 2.4369 30 1 3.7639 1.6613 2.4270 31 1 1.7769 0.9505 6.4375 32 1 1.1301 2.5476 5.9869 33 1 -0.5553 0.7914 5.5917 34 1 -0.0378 1.5181 4.0547 35 1 -0.0744 -0.7971 3.6785 36 1 0.7031 -1.1569 5.2270 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307433194.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:55 Heat of formation + Delta-G solvation = -32.177836 kcal Electronic energy + Delta-G solvation = -16230.738873 eV Core-core repulsion = 13715.085809 eV Total energy + Delta-G solvation = -2515.653064 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.38289 -36.35694 -34.25435 -33.28976 -31.66467 -28.04909 -26.91863 -25.21496 -24.08745 -23.06162 -21.10268 -19.80303 -18.52080 -16.46261 -16.03164 -15.76112 -15.14070 -14.71897 -14.50878 -13.92368 -13.50688 -13.12007 -12.59879 -12.56893 -11.88650 -11.68263 -11.49936 -11.37911 -10.98103 -10.85604 -10.66637 -10.62532 -10.52639 -10.22425 -10.10209 -9.95313 -9.57405 -9.01650 -8.76774 -8.45098 -7.19434 -6.00784 -4.07295 3.30716 3.36989 3.39876 3.87262 4.41359 4.75708 4.90798 4.93489 5.06549 5.11109 5.20255 5.30311 5.44922 5.50766 5.69646 5.80613 5.85789 5.96634 6.10964 6.18642 6.24443 6.32501 6.37925 6.58948 6.71187 6.91250 7.17772 7.27020 7.40943 7.56640 7.80116 7.92845 8.29447 8.43887 8.70252 9.04138 9.58601 11.05495 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.049916 B = 0.006443 C = 0.006205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.809878 B = 4344.744392 C = 4511.551236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.212 3.788 3 H 0.002 0.998 4 C -0.518 4.518 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.678 5.678 13 C 0.087 3.913 14 H 0.092 0.908 15 C -0.165 4.165 16 C 0.066 3.934 17 H 0.070 0.930 18 O -0.367 6.367 19 C 0.063 3.937 20 C -0.153 4.153 21 C -0.104 4.104 22 C -0.126 4.126 23 H 0.094 0.906 24 H 0.030 0.970 25 H 0.003 0.997 26 H 0.080 0.920 27 H 0.261 0.739 28 H 0.332 0.668 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.261 -0.339 13.944 14.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.104 3.896 3 H 0.019 0.981 4 C -0.557 4.557 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.307 5.307 13 C -0.025 4.025 14 H 0.110 0.890 15 C -0.205 4.205 16 C 0.008 3.992 17 H 0.087 0.913 18 O -0.286 6.286 19 C -0.014 4.014 20 C -0.191 4.191 21 C -0.142 4.142 22 C -0.146 4.146 23 H 0.112 0.888 24 H 0.049 0.951 25 H 0.022 0.978 26 H 0.098 0.902 27 H 0.070 0.930 28 H 0.150 0.850 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.609 -0.299 13.865 13.882 hybrid contribution 0.901 -0.173 -1.002 1.359 sum 1.510 -0.472 12.863 12.960 Atomic orbital electron populations 1.21717 0.98018 0.99196 0.99248 1.19093 0.92473 0.92409 0.85575 0.98072 1.21273 1.31425 1.12456 0.90547 0.92296 1.24926 0.95087 0.94975 0.99035 1.69903 1.36733 1.22814 1.23414 0.86531 0.79217 0.79294 0.82533 1.20651 1.21288 1.19961 1.60599 1.31778 1.32310 1.06023 1.22881 0.94329 0.94467 0.90794 0.88995 1.23992 0.99802 1.02702 0.93988 1.22967 0.95430 0.85866 0.94946 0.91270 1.87933 1.50334 1.28411 1.61888 1.22384 0.87237 1.00685 0.91077 1.21619 0.98411 0.97870 1.01198 1.20421 0.97510 0.96369 0.99867 1.22559 0.95160 0.99533 0.97342 0.88783 0.95101 0.97821 0.90180 0.92951 0.84991 0.89167 0.90895 0.93569 0.89249 0.91249 0.91064 0.90952 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.13 9.18 37.16 0.34 -2.79 16 2 C 0.21 5.43 2.46 -68.87 -0.17 5.26 16 3 H 0.00 0.04 7.85 -51.93 -0.41 -0.36 16 4 C -0.52 -14.32 8.59 -34.44 -0.30 -14.61 16 5 H 0.06 1.60 7.62 -52.49 -0.40 1.20 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.71 11.32 55.43 0.63 -25.08 16 8 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 12 N -0.68 -14.49 6.42 -100.27 -0.64 -15.13 16 13 C 0.09 1.60 3.27 -67.06 -0.22 1.38 16 14 H 0.09 1.89 7.15 -51.93 -0.37 1.52 16 15 C -0.17 -2.70 7.48 -25.51 -0.19 -2.89 16 16 C 0.07 0.97 4.81 -26.10 -0.13 0.84 16 17 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 18 O -0.37 -5.63 10.43 -35.23 -0.37 -5.99 16 19 C 0.06 0.76 6.78 36.98 0.25 1.01 16 20 C -0.15 -1.92 5.92 -27.98 -0.17 -2.08 16 21 C -0.10 -1.43 5.50 -28.80 -0.16 -1.59 16 22 C -0.13 -1.91 3.64 -91.57 -0.33 -2.24 16 23 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 24 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.00 0.06 7.71 -51.93 -0.40 -0.34 16 26 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 27 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.33 6.89 7.71 -39.29 -0.30 6.58 16 29 H 0.09 1.36 7.85 -51.93 -0.41 0.95 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 1.01 7.91 -51.93 -0.41 0.60 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 283.43 15.07 4.27 4.27 Total: -1.00 -28.88 283.43 -8.25 -37.13 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -5.96 Total: 4.53 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -1.16 Total: -16.09 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: -0.02 Total: -40.21 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.37 Total: -5.99 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.88 -8.25 -37.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307433194.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.955 kcal (2) G-P(sol) polarization free energy of solvation -28.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds