Wall clock time and date at job start Mon Mar 30 2020 03:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47339 * 2 1 4 4 C 1.50694 * 109.47174 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 240.00081 * 4 2 1 6 6 C 1.37885 * 119.99902 * 59.99918 * 4 2 1 7 7 N 1.31516 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99854 * 179.72538 * 6 4 2 9 9 H 1.48498 * 109.46909 * 90.00086 * 8 6 4 10 10 H 1.48497 * 109.46701 * 209.99996 * 8 6 4 11 11 H 1.48500 * 109.46867 * 330.00101 * 8 6 4 12 12 N 1.46903 * 109.47120 * 119.99748 * 2 1 3 13 13 C 1.46898 * 111.00159 * 275.00019 * 12 2 1 14 14 H 1.09003 * 112.92325 * 25.33281 * 13 12 2 15 15 C 1.53909 * 113.71370 * 253.83768 * 13 12 2 16 16 C 1.54457 * 86.77868 * 219.47687 * 15 13 12 17 17 H 1.08996 * 114.87741 * 141.03029 * 16 15 13 18 18 O 1.42846 * 111.34350 * 271.23448 * 16 15 13 19 19 C 1.42857 * 113.83522 * 145.19993 * 18 16 15 20 20 C 1.52663 * 108.91927 * 295.59964 * 19 18 16 21 21 C 1.50851 * 110.51609 * 61.28786 * 20 19 18 22 22 C 1.51029 * 114.03471 * 315.22319 * 21 20 19 23 23 H 1.08996 * 111.62029 * 161.00765 * 22 21 20 24 24 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47223 * 299.99995 * 1 2 3 26 26 H 1.08995 * 109.47095 * 60.00224 * 1 2 3 27 27 H 0.97001 * 119.99646 * 180.02562 * 7 6 4 28 28 H 1.00898 * 110.99943 * 151.04803 * 12 2 1 29 29 H 1.09005 * 113.64640 * 333.93075 * 15 13 12 30 30 H 1.09000 * 113.65520 * 104.94812 * 15 13 12 31 31 H 1.08998 * 109.56527 * 55.43804 * 19 18 16 32 32 H 1.09001 * 109.55815 * 175.66255 * 19 18 16 33 33 H 1.08999 * 109.22123 * 181.62205 * 20 19 18 34 34 H 1.08997 * 109.22862 * 301.01358 * 20 19 18 35 35 H 1.08996 * 108.01980 * 194.28423 * 21 20 19 36 36 H 1.09004 * 108.73444 * 76.67303 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3282 -1.1156 -4.0079 9 1 1.3553 -2.1611 -4.4148 10 1 2.4907 -0.1345 -5.1107 11 1 3.6387 -1.7477 -3.7105 12 7 2.0197 -0.6925 1.1995 13 6 2.0825 0.2226 2.3469 14 1 1.3881 1.0585 2.2618 15 6 3.5137 0.6432 2.7256 16 6 3.0668 0.5199 4.1989 17 1 3.8123 0.0935 4.8701 18 8 2.5167 1.7474 4.6798 19 6 1.4447 1.5751 5.6082 20 6 0.2762 0.8992 4.8952 21 6 0.6825 -0.4619 4.3875 22 6 2.0297 -0.4870 3.7053 23 1 2.4345 -1.4977 3.6528 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.7089 1.1613 -3.4844 28 1 2.9173 -1.1204 1.0288 29 1 4.2737 -0.0830 2.4369 30 1 3.7639 1.6613 2.4270 31 1 1.7769 0.9505 6.4375 32 1 1.1301 2.5476 5.9869 33 1 -0.5553 0.7914 5.5917 34 1 -0.0378 1.5181 4.0547 35 1 -0.0744 -0.7971 3.6785 36 1 0.7031 -1.1569 5.2270 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307433194.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:54 Heat of formation + Delta-G solvation = -51.198931 kcal Electronic energy + Delta-G solvation = -16231.563689 eV Core-core repulsion = 13715.085809 eV Total energy + Delta-G solvation = -2516.477880 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.60783 -37.85524 -35.98203 -34.38354 -33.59899 -29.84928 -28.13380 -27.34067 -25.26561 -24.45165 -22.35790 -21.74955 -19.80094 -18.36347 -17.33058 -16.92744 -16.82147 -16.14388 -15.94008 -15.31547 -15.05531 -14.61674 -14.41394 -13.76055 -13.42006 -13.35390 -12.96057 -12.85616 -12.68875 -12.50000 -12.41689 -12.21871 -12.11029 -11.86199 -11.70899 -11.42532 -10.95439 -10.77671 -10.55946 -10.15983 -8.96082 -8.13761 -6.28650 1.42144 1.42908 1.53329 2.41116 2.80549 3.14595 3.52137 3.55481 3.71161 3.95262 4.02270 4.07327 4.23929 4.37707 4.55781 4.59023 4.75252 4.80677 4.85607 4.94002 4.96539 5.03145 5.06430 5.13701 5.17160 5.22718 5.40111 5.45823 5.52808 5.68432 5.85319 6.20353 6.34823 6.50876 6.78524 7.02651 7.42221 8.92114 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.049916 B = 0.006443 C = 0.006205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.809878 B = 4344.744392 C = 4511.551236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.218 3.782 3 H -0.037 1.037 4 C -0.538 4.538 5 H 0.062 0.938 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.965 3.035 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.266 1.266 12 N -0.673 5.673 13 C 0.072 3.928 14 H 0.062 0.938 15 C -0.166 4.166 16 C 0.080 3.920 17 H 0.100 0.900 18 O -0.392 6.392 19 C 0.059 3.941 20 C -0.152 4.152 21 C -0.106 4.106 22 C -0.115 4.115 23 H 0.104 0.896 24 H 0.028 0.972 25 H 0.014 0.986 26 H 0.055 0.945 27 H 0.262 0.738 28 H 0.335 0.665 29 H 0.105 0.895 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.043 0.957 35 H 0.051 0.949 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.975 -1.556 15.410 15.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.110 3.890 3 H -0.019 1.019 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.790 3.210 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.190 1.190 12 N -0.303 5.303 13 C -0.039 4.039 14 H 0.080 0.920 15 C -0.205 4.205 16 C 0.021 3.979 17 H 0.117 0.883 18 O -0.312 6.312 19 C -0.017 4.017 20 C -0.190 4.190 21 C -0.143 4.143 22 C -0.134 4.134 23 H 0.122 0.878 24 H 0.047 0.953 25 H 0.034 0.966 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.154 0.846 29 H 0.123 0.877 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.124 0.876 33 H 0.114 0.886 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.326 -1.518 15.361 15.492 hybrid contribution 0.649 0.257 -1.417 1.580 sum 1.975 -1.261 13.944 14.139 Atomic orbital electron populations 1.21525 0.98043 0.98686 0.98607 1.18852 0.92442 0.90566 0.87155 1.01930 1.21609 1.31699 1.12702 0.91577 0.92025 1.25790 0.95175 0.95643 1.02221 1.70043 1.37638 1.24114 1.24167 0.85448 0.78935 0.78119 0.78457 1.20055 1.20992 1.18989 1.60561 1.32034 1.32563 1.05109 1.22944 0.95478 0.94099 0.91396 0.91965 1.23995 0.98549 1.02044 0.95953 1.22915 0.95393 0.85441 0.94109 0.88274 1.87907 1.51432 1.28978 1.62852 1.22620 0.86013 1.02185 0.90877 1.21626 0.99705 0.96718 1.00903 1.20443 0.95905 0.97733 1.00226 1.22500 0.96507 0.99821 0.94593 0.87811 0.95289 0.96648 0.92577 0.92864 0.84632 0.87693 0.92601 0.91186 0.87595 0.88551 0.93809 0.93047 0.90129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.76 9.18 71.98 0.66 -5.10 16 2 C 0.22 11.54 2.46 44.17 0.11 11.65 16 3 H -0.04 -2.19 7.85 -2.39 -0.02 -2.21 16 4 C -0.54 -30.08 8.59 25.60 0.22 -29.86 16 5 H 0.06 3.34 7.62 -2.91 -0.02 3.31 16 6 C 0.01 0.60 5.30 84.66 0.45 1.05 16 7 N -0.92 -54.33 11.32 21.45 0.24 -54.08 16 8 Si 0.97 43.93 29.54 68.60 2.03 45.96 16 9 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 12 N -0.67 -29.13 6.42 -471.14 -3.02 -32.15 16 13 C 0.07 2.67 3.27 45.34 0.15 2.82 16 14 H 0.06 2.68 7.15 -2.39 -0.02 2.66 16 15 C -0.17 -5.34 7.48 31.39 0.23 -5.11 16 16 C 0.08 2.15 4.81 31.01 0.15 2.30 16 17 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 18 O -0.39 -11.37 10.43 -148.98 -1.55 -12.92 16 19 C 0.06 1.27 6.78 71.87 0.49 1.75 16 20 C -0.15 -3.53 5.92 29.78 0.18 -3.35 16 21 C -0.11 -2.70 5.50 29.25 0.16 -2.53 16 22 C -0.11 -3.27 3.64 -11.41 -0.04 -3.31 16 23 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 24 H 0.03 1.46 8.14 -2.39 -0.02 1.45 16 25 H 0.01 0.71 7.71 -2.39 -0.02 0.69 16 26 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 27 H 0.26 14.66 8.31 -92.71 -0.77 13.88 16 28 H 0.34 13.90 7.71 -89.70 -0.69 13.21 16 29 H 0.10 3.03 7.85 -2.38 -0.02 3.01 16 30 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.04 1.24 7.91 -2.39 -0.02 1.22 16 35 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -62.95 283.43 0.80 -62.15 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.35 Total: 20.74 kcal Atomic # 6 Polarization: -32.44 SS G_CDS: 2.75 Total: -29.69 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -2.78 Total: -86.23 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: -1.55 Total: -12.92 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -62.95 0.80 -62.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307433194.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.947 kcal (2) G-P(sol) polarization free energy of solvation -62.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds