Wall clock time and date at job start Mon Mar 30 2020 03:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.47139 * 2 1 4 4 C 1.50696 * 109.47143 * 240.00278 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00163 * 4 2 1 6 6 C 1.37875 * 120.00139 * 59.99884 * 4 2 1 7 7 N 1.31508 * 120.00167 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99956 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47412 * 89.99755 * 8 6 4 10 10 H 1.48500 * 109.47263 * 209.99867 * 8 6 4 11 11 H 1.48503 * 109.47161 * 329.99548 * 8 6 4 12 12 N 1.46902 * 109.47214 * 119.99994 * 2 1 3 13 13 C 1.48806 * 110.99893 * 158.66264 * 12 2 1 14 14 C 1.55034 * 103.40928 * 158.42547 * 13 12 2 15 15 C 1.54892 * 102.95449 * 323.23594 * 14 13 12 16 16 C 1.46736 * 111.00048 * 275.69998 * 12 2 1 17 17 C 1.53714 * 111.45453 * 92.46139 * 16 12 2 18 18 C 1.54345 * 103.91145 * 260.30349 * 17 16 12 19 19 O 1.43843 * 107.39793 * 2.52404 * 18 17 16 20 20 C 1.44789 * 107.03516 * 334.06406 * 19 18 17 21 21 H 1.08995 * 109.47257 * 173.05814 * 1 2 3 22 22 H 1.09004 * 109.46866 * 293.05619 * 1 2 3 23 23 H 1.08997 * 109.47221 * 53.05540 * 1 2 3 24 24 H 0.97001 * 120.00732 * 179.97438 * 7 6 4 25 25 H 1.08997 * 110.63281 * 39.94947 * 13 12 2 26 26 H 1.09003 * 110.77424 * 276.97001 * 13 12 2 27 27 H 1.08998 * 110.72149 * 204.87071 * 14 13 12 28 28 H 1.08997 * 110.71393 * 81.59577 * 14 13 12 29 29 H 1.08998 * 110.39588 * 263.06252 * 15 14 13 30 30 H 1.09000 * 110.39516 * 140.65533 * 15 14 13 31 31 H 1.09001 * 110.54219 * 141.69753 * 17 16 12 32 32 H 1.09004 * 110.65809 * 18.96691 * 17 16 12 33 33 H 1.09000 * 109.88531 * 122.01755 * 18 17 16 34 34 H 1.08998 * 109.88219 * 243.03222 * 18 17 16 35 35 H 1.08997 * 110.51443 * 280.14586 * 20 19 18 36 36 H 1.09006 * 110.79218 * 157.24692 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3214 -1.1202 -4.0079 9 1 1.3429 -2.1616 -4.4119 10 1 2.4866 -0.1413 -5.1122 11 1 3.6294 -1.7581 -3.7122 12 7 2.0197 -0.6925 1.1994 13 6 3.4175 -1.1660 1.0085 14 6 3.9405 -1.3362 2.4580 15 6 3.2766 -0.1547 3.2078 16 6 2.0668 0.2174 2.3496 17 6 0.7651 0.1604 3.1652 18 6 -0.0247 1.3987 2.6907 19 8 0.7520 2.0355 1.6609 20 6 2.1372 1.6871 1.8978 21 1 -0.3633 -1.0201 -0.1242 22 1 -0.3633 0.4025 0.9456 23 1 -0.3633 0.6176 -0.8213 24 1 0.7095 1.1620 -3.4843 25 1 4.0057 -0.4207 0.4731 26 1 3.4340 -2.1190 0.4798 27 1 5.0267 -1.2508 2.4886 28 1 3.6157 -2.2892 2.8756 29 1 3.9662 0.6866 3.2775 30 1 2.9559 -0.4675 4.2015 31 1 0.9787 0.2288 4.2319 32 1 0.2127 -0.7530 2.9446 33 1 -0.9905 1.0912 2.2898 34 1 -0.1711 2.0865 3.5234 35 1 2.5588 2.3113 2.6856 36 1 2.7215 1.7797 0.9822 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307748720.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:21 Heat of formation + Delta-G solvation = -15.266601 kcal Electronic energy + Delta-G solvation = -17220.476786 eV Core-core repulsion = 14705.557048 eV Total energy + Delta-G solvation = -2514.919738 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.26901 -36.42810 -33.81794 -31.17317 -30.85707 -28.74888 -27.54164 -25.14267 -24.14998 -22.06036 -20.96000 -20.34607 -18.13413 -16.60815 -15.82025 -15.47093 -14.77298 -14.50986 -14.36173 -13.67893 -13.18355 -12.91582 -12.30670 -12.27389 -11.70725 -11.37642 -11.12211 -10.99965 -10.96868 -10.83595 -10.53043 -10.40172 -10.29602 -9.92571 -9.83761 -9.73959 -9.63517 -9.03894 -8.51011 -8.35169 -7.14004 -5.91332 -3.96459 3.33607 3.40130 3.42281 4.44223 4.49199 4.80587 5.07674 5.24441 5.32240 5.41524 5.49791 5.52375 5.62894 5.80698 5.88224 6.05334 6.11020 6.17738 6.25213 6.26484 6.30080 6.53998 6.62909 6.72862 6.79300 7.17190 7.34641 7.39300 7.46453 7.71156 7.80602 7.94145 8.30137 8.46162 8.68432 9.10232 9.67471 11.14524 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.031746 B = 0.011152 C = 0.009084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.777208 B = 2510.235592 C = 3081.687580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.193 3.807 3 H 0.030 0.970 4 C -0.519 4.519 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.885 5.885 8 Si 0.890 3.110 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.498 5.498 13 C 0.054 3.946 14 C -0.130 4.130 15 C -0.115 4.115 16 C 0.064 3.936 17 C -0.134 4.134 18 C 0.048 3.952 19 O -0.358 6.358 20 C 0.028 3.972 21 H 0.018 0.982 22 H 0.031 0.969 23 H 0.072 0.928 24 H 0.258 0.742 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.043 0.957 35 H 0.046 0.954 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.785 -0.468 11.049 11.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 H 0.048 0.952 4 C -0.558 4.558 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.524 5.524 8 Si 0.718 3.282 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.201 1.201 12 N -0.222 5.222 13 C -0.074 4.074 14 C -0.168 4.168 15 C -0.153 4.153 16 C -0.027 4.027 17 C -0.173 4.173 18 C -0.029 4.029 19 O -0.277 6.277 20 C -0.049 4.049 21 H 0.037 0.963 22 H 0.049 0.951 23 H 0.091 0.909 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.242 -0.646 10.803 11.052 hybrid contribution 0.820 0.091 -0.985 1.285 sum 3.062 -0.555 9.819 10.300 Atomic orbital electron populations 1.21879 0.97482 0.98921 1.00113 1.19679 0.93229 0.93618 0.84746 0.95248 1.21390 1.31421 1.12493 0.90452 0.92108 1.24914 0.95225 0.95028 0.98813 1.69956 1.36581 1.22724 1.23093 0.86630 0.79136 0.79395 0.82991 1.20790 1.21391 1.20067 1.64757 1.18924 1.33109 1.05412 1.23031 0.89865 1.00690 0.93772 1.22655 0.98886 0.98097 0.97197 1.22267 0.96220 0.98402 0.98450 1.22450 0.94283 0.92088 0.93885 1.22860 0.96544 0.99560 0.98292 1.23125 0.96335 0.93000 0.90466 1.89084 1.16885 1.72167 1.49533 1.23989 0.85082 0.94754 1.01109 0.96320 0.95060 0.90900 0.93172 0.93766 0.90585 0.92055 0.91543 0.91854 0.91528 0.91605 0.89585 0.89886 0.93853 0.93560 0.87991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.32 37.16 0.31 -2.92 16 2 C 0.19 4.90 1.55 -68.86 -0.11 4.79 16 3 H 0.03 0.82 4.31 -51.93 -0.22 0.60 16 4 C -0.52 -14.35 7.79 -34.44 -0.27 -14.62 16 5 H 0.06 1.66 5.85 -52.49 -0.31 1.35 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -25.94 11.40 55.43 0.63 -25.30 16 8 Si 0.89 21.68 29.54 -169.99 -5.02 16.65 16 9 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.50 -10.68 4.78 -208.73 -1.00 -11.68 16 13 C 0.05 1.06 5.15 -1.69 -0.01 1.06 16 14 C -0.13 -1.98 7.08 -24.66 -0.17 -2.15 16 15 C -0.12 -1.69 6.22 -25.77 -0.16 -1.85 16 16 C 0.06 1.15 0.85 -130.88 -0.11 1.04 16 17 C -0.13 -2.16 5.76 -25.66 -0.15 -2.31 16 18 C 0.05 0.80 6.39 37.86 0.24 1.05 16 19 O -0.36 -7.45 9.08 -35.23 -0.32 -7.77 16 20 C 0.03 0.54 5.70 37.64 0.21 0.75 16 21 H 0.02 0.47 8.13 -51.93 -0.42 0.05 16 22 H 0.03 0.71 2.81 -51.93 -0.15 0.56 16 23 H 0.07 2.06 6.29 -51.93 -0.33 1.74 16 24 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.04 0.92 7.79 -51.93 -0.40 0.52 16 26 H 0.08 1.55 7.04 -51.93 -0.37 1.18 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.86 7.59 -51.93 -0.39 0.46 16 30 H 0.07 0.86 7.38 -51.93 -0.38 0.48 16 31 H 0.07 0.87 7.47 -51.93 -0.39 0.48 16 32 H 0.09 1.47 8.06 -51.93 -0.42 1.05 16 33 H 0.08 1.41 6.77 -51.93 -0.35 1.06 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.75 7.87 -51.93 -0.41 0.34 16 36 H 0.10 2.18 6.16 -51.93 -0.32 1.86 16 LS Contribution 262.47 15.07 3.96 3.96 Total: -1.00 -29.78 262.47 -7.32 -37.10 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.26 Total: 0.56 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -0.31 Total: -13.52 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: -0.37 Total: -36.98 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: -0.32 Total: -7.77 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.78 -7.32 -37.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307748720.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.830 kcal (2) G-P(sol) polarization free energy of solvation -29.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds