Wall clock time and date at job start Mon Mar 30 2020 03:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.47139 * 2 1 4 4 C 1.50696 * 109.47143 * 240.00278 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00163 * 4 2 1 6 6 C 1.37875 * 120.00139 * 59.99884 * 4 2 1 7 7 N 1.31508 * 120.00167 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99956 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47412 * 89.99755 * 8 6 4 10 10 H 1.48500 * 109.47263 * 209.99867 * 8 6 4 11 11 H 1.48503 * 109.47161 * 329.99548 * 8 6 4 12 12 N 1.46902 * 109.47214 * 119.99994 * 2 1 3 13 13 C 1.48806 * 110.99893 * 158.66264 * 12 2 1 14 14 C 1.55034 * 103.40928 * 158.42547 * 13 12 2 15 15 C 1.54892 * 102.95449 * 323.23594 * 14 13 12 16 16 C 1.46736 * 111.00048 * 275.69998 * 12 2 1 17 17 C 1.53714 * 111.45453 * 92.46139 * 16 12 2 18 18 C 1.54345 * 103.91145 * 260.30349 * 17 16 12 19 19 O 1.43843 * 107.39793 * 2.52404 * 18 17 16 20 20 C 1.44789 * 107.03516 * 334.06406 * 19 18 17 21 21 H 1.08995 * 109.47257 * 173.05814 * 1 2 3 22 22 H 1.09004 * 109.46866 * 293.05619 * 1 2 3 23 23 H 1.08997 * 109.47221 * 53.05540 * 1 2 3 24 24 H 0.97001 * 120.00732 * 179.97438 * 7 6 4 25 25 H 1.08997 * 110.63281 * 39.94947 * 13 12 2 26 26 H 1.09003 * 110.77424 * 276.97001 * 13 12 2 27 27 H 1.08998 * 110.72149 * 204.87071 * 14 13 12 28 28 H 1.08997 * 110.71393 * 81.59577 * 14 13 12 29 29 H 1.08998 * 110.39588 * 263.06252 * 15 14 13 30 30 H 1.09000 * 110.39516 * 140.65533 * 15 14 13 31 31 H 1.09001 * 110.54219 * 141.69753 * 17 16 12 32 32 H 1.09004 * 110.65809 * 18.96691 * 17 16 12 33 33 H 1.09000 * 109.88531 * 122.01755 * 18 17 16 34 34 H 1.08998 * 109.88219 * 243.03222 * 18 17 16 35 35 H 1.08997 * 110.51443 * 280.14586 * 20 19 18 36 36 H 1.09006 * 110.79218 * 157.24692 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3214 -1.1202 -4.0079 9 1 1.3429 -2.1616 -4.4119 10 1 2.4866 -0.1413 -5.1122 11 1 3.6294 -1.7581 -3.7122 12 7 2.0197 -0.6925 1.1994 13 6 3.4175 -1.1660 1.0085 14 6 3.9405 -1.3362 2.4580 15 6 3.2766 -0.1547 3.2078 16 6 2.0668 0.2174 2.3496 17 6 0.7651 0.1604 3.1652 18 6 -0.0247 1.3987 2.6907 19 8 0.7520 2.0355 1.6609 20 6 2.1372 1.6871 1.8978 21 1 -0.3633 -1.0201 -0.1242 22 1 -0.3633 0.4025 0.9456 23 1 -0.3633 0.6176 -0.8213 24 1 0.7095 1.1620 -3.4843 25 1 4.0057 -0.4207 0.4731 26 1 3.4340 -2.1190 0.4798 27 1 5.0267 -1.2508 2.4886 28 1 3.6157 -2.2892 2.8756 29 1 3.9662 0.6866 3.2775 30 1 2.9559 -0.4675 4.2015 31 1 0.9787 0.2288 4.2319 32 1 0.2127 -0.7530 2.9446 33 1 -0.9905 1.0912 2.2898 34 1 -0.1711 2.0865 3.5234 35 1 2.5588 2.3113 2.6856 36 1 2.7215 1.7797 0.9822 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307748720.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:21 Heat of formation + Delta-G solvation = -35.973274 kcal Electronic energy + Delta-G solvation = -17221.374695 eV Core-core repulsion = 14705.557048 eV Total energy + Delta-G solvation = -2515.817646 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.75052 -37.92879 -35.73441 -33.05999 -32.27324 -30.17032 -29.27235 -27.24192 -25.64569 -23.44502 -22.64104 -21.88730 -19.69977 -18.38411 -17.50753 -17.27117 -16.34020 -16.09027 -15.83639 -15.25718 -14.65832 -14.48748 -14.09575 -13.83582 -13.42611 -12.97861 -12.86751 -12.74815 -12.59850 -12.35590 -12.28387 -12.10362 -11.80029 -11.58361 -11.47283 -11.41480 -11.17649 -10.64052 -10.53519 -10.38825 -8.87141 -8.07233 -6.19020 1.37918 1.38917 1.48554 2.41417 3.08575 3.20091 3.36821 3.74269 3.93153 3.96531 4.18885 4.25217 4.37922 4.47178 4.50529 4.72651 4.79029 4.87141 4.92554 4.99568 5.05660 5.08560 5.19610 5.24485 5.33102 5.35734 5.44281 5.47701 5.62314 5.82374 5.90834 6.08199 6.28021 6.43191 6.80781 7.00177 7.49278 8.97858 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.031746 B = 0.011152 C = 0.009084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.777208 B = 2510.235592 C = 3081.687580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.201 3.799 3 H 0.005 0.995 4 C -0.534 4.534 5 H 0.059 0.941 6 C 0.010 3.990 7 N -0.916 5.916 8 Si 0.954 3.046 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.267 1.267 12 N -0.509 5.509 13 C 0.049 3.951 14 C -0.117 4.117 15 C -0.108 4.108 16 C 0.055 3.945 17 C -0.127 4.127 18 C 0.040 3.960 19 O -0.397 6.397 20 C 0.030 3.970 21 H 0.002 0.998 22 H 0.057 0.943 23 H 0.039 0.961 24 H 0.258 0.742 25 H 0.021 0.979 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.762 -1.113 13.334 13.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.095 3.905 3 H 0.023 0.977 4 C -0.572 4.572 5 H 0.077 0.923 6 C -0.189 4.189 7 N -0.556 5.556 8 Si 0.780 3.220 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.191 1.191 12 N -0.233 5.233 13 C -0.079 4.079 14 C -0.155 4.155 15 C -0.146 4.146 16 C -0.036 4.036 17 C -0.165 4.165 18 C -0.036 4.036 19 O -0.317 6.317 20 C -0.047 4.047 21 H 0.021 0.979 22 H 0.076 0.924 23 H 0.057 0.943 24 H 0.067 0.933 25 H 0.039 0.961 26 H 0.078 0.922 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.116 0.884 31 H 0.126 0.874 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.229 -1.304 13.109 13.564 hybrid contribution 0.499 0.317 -1.665 1.766 sum 3.728 -0.987 11.444 12.077 Atomic orbital electron populations 1.21735 0.98107 0.97177 1.00172 1.19369 0.92684 0.92435 0.86062 0.97741 1.21778 1.31164 1.12439 0.91834 0.92324 1.25715 0.95511 0.95771 1.01859 1.70108 1.37789 1.24143 1.23575 0.85625 0.78854 0.78259 0.79296 1.20455 1.21037 1.19119 1.64636 1.20069 1.33727 1.04857 1.23028 0.89004 0.98960 0.96929 1.22594 1.00333 0.99089 0.93468 1.22299 0.94731 0.98606 0.98930 1.22682 0.97076 0.90674 0.93171 1.22880 0.94983 0.98379 1.00297 1.23328 0.95494 0.94183 0.90616 1.89042 1.18131 1.72918 1.51569 1.23982 0.84166 0.96267 1.00305 0.97850 0.92430 0.94251 0.93327 0.96078 0.92240 0.89633 0.90372 0.90292 0.88386 0.87438 0.90835 0.90883 0.90478 0.90183 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -6.04 8.32 71.98 0.60 -5.44 16 2 C 0.20 10.55 1.55 44.17 0.07 10.61 16 3 H 0.01 0.30 4.31 -2.38 -0.01 0.29 16 4 C -0.53 -30.44 7.79 25.60 0.20 -30.24 16 5 H 0.06 3.29 5.85 -2.91 -0.02 3.27 16 6 C 0.01 0.59 5.30 84.66 0.45 1.04 16 7 N -0.92 -55.71 11.40 21.45 0.24 -55.46 16 8 Si 0.95 45.41 29.54 68.60 2.03 47.44 16 9 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 10 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 12 N -0.51 -21.75 4.78 -814.30 -3.89 -25.64 16 13 C 0.05 1.90 5.15 86.63 0.45 2.34 16 14 C -0.12 -3.17 7.08 31.94 0.23 -2.94 16 15 C -0.11 -2.70 6.22 31.22 0.19 -2.51 16 16 C 0.06 1.86 0.85 4.08 0.00 1.86 16 17 C -0.13 -3.69 5.76 31.29 0.18 -3.51 16 18 C 0.04 1.27 6.39 72.44 0.46 1.73 16 19 O -0.40 -16.45 9.08 -148.98 -1.35 -17.80 16 20 C 0.03 1.12 5.70 72.29 0.41 1.53 16 21 H 0.00 0.13 8.13 -2.39 -0.02 0.11 16 22 H 0.06 2.68 2.81 -2.39 -0.01 2.67 16 23 H 0.04 2.32 6.29 -2.39 -0.02 2.30 16 24 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 25 H 0.02 0.90 7.79 -2.39 -0.02 0.88 16 26 H 0.06 2.45 7.04 -2.39 -0.02 2.43 16 27 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.08 1.77 7.59 -2.39 -0.02 1.75 16 30 H 0.10 1.91 7.38 -2.39 -0.02 1.90 16 31 H 0.11 2.25 7.47 -2.39 -0.02 2.23 16 32 H 0.07 2.34 8.06 -2.38 -0.02 2.32 16 33 H 0.07 2.42 6.77 -2.39 -0.02 2.40 16 34 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.08 2.38 7.87 -2.39 -0.02 2.36 16 36 H 0.06 2.84 6.16 -2.38 -0.01 2.82 16 Total: -1.00 -67.08 262.47 1.33 -65.75 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 1.07 Total: 11.26 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: 3.24 Total: -25.54 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -3.65 Total: -81.11 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -1.35 Total: -17.80 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -67.08 1.33 -65.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307748720.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.778 kcal (2) G-P(sol) polarization free energy of solvation -67.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds