Wall clock time and date at job start Mon Mar 30 2020 03:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08993 * 109.47377 * 2 1 4 4 C 1.50701 * 109.47058 * 120.00335 * 2 1 3 5 5 H 1.08006 * 119.99657 * 119.99533 * 4 2 1 6 6 C 1.37869 * 119.99984 * 299.99711 * 4 2 1 7 7 N 1.31513 * 120.00249 * 0.02562 * 6 4 2 8 8 Si 1.86810 * 119.99973 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46778 * 90.00143 * 8 6 4 10 10 H 1.48498 * 109.47092 * 210.00061 * 8 6 4 11 11 H 1.48494 * 109.46939 * 329.99955 * 8 6 4 12 12 N 1.46903 * 109.46872 * 240.00075 * 2 1 3 13 13 C 1.48785 * 110.99910 * 184.12798 * 12 2 1 14 14 C 1.54467 * 104.79049 * 202.45148 * 13 12 2 15 15 C 1.54528 * 105.04143 * 23.52530 * 14 13 12 16 16 C 1.47282 * 110.99876 * 68.78165 * 12 2 1 17 17 C 1.53375 * 111.42072 * 278.83339 * 16 12 2 18 18 C 1.54762 * 103.64883 * 120.59141 * 17 16 12 19 19 O 1.44531 * 104.84931 * 23.78164 * 18 17 16 20 20 C 1.44706 * 105.47135 * 320.23215 * 19 18 17 21 21 H 1.09005 * 109.47009 * 306.15456 * 1 2 3 22 22 H 1.09005 * 109.47401 * 66.14838 * 1 2 3 23 23 H 1.08995 * 109.47672 * 186.15337 * 1 2 3 24 24 H 0.96995 * 120.00491 * 180.02562 * 7 6 4 25 25 H 1.09006 * 110.37360 * 83.62461 * 13 12 2 26 26 H 1.08996 * 110.37531 * 321.27970 * 13 12 2 27 27 H 1.09007 * 110.32869 * 264.63895 * 14 13 12 28 28 H 1.08994 * 110.33040 * 142.41677 * 14 13 12 29 29 H 1.08998 * 110.38411 * 117.98767 * 15 14 13 30 30 H 1.09000 * 110.38698 * 240.36497 * 15 14 13 31 31 H 1.09003 * 110.59232 * 239.13048 * 17 16 12 32 32 H 1.08992 * 110.58975 * 2.05080 * 17 16 12 33 33 H 1.08995 * 110.36584 * 264.93596 * 18 17 16 34 34 H 1.09000 * 110.45707 * 142.66551 * 18 17 16 35 35 H 1.08997 * 110.42014 * 280.64295 * 20 19 18 36 36 H 1.08998 * 110.51726 * 158.23480 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2304 5 1 2.6531 -1.5887 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3213 -1.1206 4.0079 9 1 3.6296 -0.5462 4.4123 10 1 1.3431 -0.9495 5.1120 11 1 2.4857 -2.5664 3.7118 12 7 2.0195 -0.6925 -1.1995 13 6 3.5035 -0.7996 -1.1849 14 6 3.8998 -0.9873 -2.6661 15 6 2.7272 -0.3873 -3.4741 16 6 1.7263 0.0858 -2.4150 17 6 0.2796 -0.1243 -2.8792 18 6 -0.3251 1.2999 -2.8463 19 8 0.8095 2.1869 -2.9678 20 6 1.8525 1.5926 -2.1596 21 1 -0.3633 0.6063 0.8298 22 1 -0.3634 0.4156 -0.9399 23 1 -0.3634 -1.0217 0.1101 24 1 0.7088 1.1611 3.4844 25 1 3.8160 -1.6621 -0.5962 26 1 3.9459 0.1134 -0.7865 27 1 4.0152 -2.0466 -2.8959 28 1 4.8228 -0.4494 -2.8821 29 1 3.0714 0.4548 -4.0744 30 1 2.2756 -1.1487 -4.1101 31 1 0.2567 -0.5271 -3.8919 32 1 -0.2518 -0.7824 -2.1918 33 1 -0.8410 1.4711 -1.9016 34 1 -1.0093 1.4427 -3.6826 35 1 1.6895 1.8145 -1.1050 36 1 2.8320 1.9512 -2.4759 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307748722.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:24 Heat of formation + Delta-G solvation = -34.932413 kcal Electronic energy + Delta-G solvation = -17081.047817 eV Core-core repulsion = 14565.275306 eV Total energy + Delta-G solvation = -2515.772511 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.83508 -38.10702 -35.77772 -33.27361 -32.42529 -29.97997 -29.29434 -27.16556 -26.06153 -23.68528 -22.51480 -21.77835 -19.94284 -18.35731 -17.40525 -17.22594 -16.73537 -16.15030 -15.83254 -15.62502 -14.67917 -14.36296 -14.05407 -13.88986 -13.65714 -13.08231 -12.92563 -12.74205 -12.67698 -12.41193 -12.22521 -12.11807 -11.93378 -11.79691 -11.65980 -11.35455 -11.25997 -10.76147 -10.67011 -10.39824 -8.97154 -8.12570 -6.23470 1.38728 1.40195 1.50352 2.39993 2.94255 3.16116 3.47118 3.68080 3.74464 3.95493 4.14100 4.24529 4.33088 4.41077 4.43205 4.70090 4.72556 4.81199 4.83545 4.91432 5.01685 5.05915 5.08631 5.15696 5.21020 5.24792 5.30941 5.39820 5.53182 5.71843 5.75036 5.88592 6.21788 6.34440 6.68149 6.90526 7.45076 8.93063 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.033057 B = 0.010214 C = 0.008597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.823892 B = 2740.785563 C = 3255.994186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.199 3.801 3 H -0.010 1.010 4 C -0.522 4.522 5 H 0.055 0.945 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.956 3.044 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.498 5.498 13 C 0.043 3.957 14 C -0.118 4.118 15 C -0.101 4.101 16 C 0.055 3.945 17 C -0.137 4.137 18 C 0.034 3.966 19 O -0.391 6.391 20 C 0.010 3.990 21 H 0.048 0.952 22 H 0.064 0.936 23 H 0.023 0.977 24 H 0.260 0.740 25 H 0.064 0.936 26 H 0.020 0.980 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.117 0.883 35 H 0.057 0.943 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.684 -1.823 -11.419 11.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.092 3.908 3 H 0.007 0.993 4 C -0.560 4.560 5 H 0.073 0.927 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.782 3.218 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.194 1.194 12 N -0.223 5.223 13 C -0.085 4.085 14 C -0.156 4.156 15 C -0.139 4.139 16 C -0.036 4.036 17 C -0.175 4.175 18 C -0.042 4.042 19 O -0.309 6.309 20 C -0.068 4.068 21 H 0.067 0.933 22 H 0.082 0.918 23 H 0.042 0.958 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.039 0.961 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.135 0.865 35 H 0.075 0.925 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.343 -2.042 -11.398 11.657 hybrid contribution 0.516 0.465 1.704 1.840 sum 1.860 -1.577 -9.694 9.996 Atomic orbital electron populations 1.22134 0.97573 0.99347 1.00750 1.19372 0.92909 0.91344 0.87127 0.99311 1.21446 1.31066 1.12253 0.91239 0.92728 1.25671 0.95390 0.95777 1.01801 1.70032 1.37710 1.24186 1.23932 0.85582 0.77992 0.79096 0.79128 1.20230 1.20971 1.19426 1.65256 1.10605 1.44644 1.01750 1.22924 0.88796 0.99558 0.97247 1.22407 0.98245 1.02140 0.92760 1.22244 0.94606 1.00983 0.96065 1.22607 0.97134 0.90907 0.92964 1.22954 0.94283 0.97384 1.02830 1.23827 0.89550 0.88679 1.02169 1.89040 1.23928 1.48438 1.69516 1.24203 0.92190 0.94381 0.95991 0.93343 0.91820 0.95809 0.93049 0.91770 0.96143 0.90122 0.90095 0.90239 0.89512 0.88329 0.90036 0.92909 0.86472 0.92526 0.89100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.86 7.78 71.98 0.56 -6.30 16 2 C 0.20 10.01 1.37 44.17 0.06 10.07 16 3 H -0.01 -0.56 5.20 -2.39 -0.01 -0.57 16 4 C -0.52 -28.81 8.04 25.60 0.21 -28.61 16 5 H 0.05 3.01 6.75 -2.91 -0.02 2.99 16 6 C 0.01 0.69 5.30 84.65 0.45 1.14 16 7 N -0.92 -53.32 11.39 21.44 0.24 -53.08 16 8 Si 0.96 44.11 29.54 68.60 2.03 46.14 16 9 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 N -0.50 -20.85 4.91 -815.47 -4.01 -24.85 16 13 C 0.04 1.63 5.37 86.44 0.46 2.09 16 14 C -0.12 -3.25 7.02 31.61 0.22 -3.03 16 15 C -0.10 -2.75 6.01 31.19 0.19 -2.56 16 16 C 0.05 1.89 0.66 3.77 0.00 1.89 16 17 C -0.14 -4.24 5.60 31.32 0.18 -4.06 16 18 C 0.03 1.05 7.12 72.58 0.52 1.57 16 19 O -0.39 -14.07 11.66 -148.98 -1.74 -15.80 16 20 C 0.01 0.38 6.08 72.10 0.44 0.82 16 21 H 0.05 2.63 6.26 -2.38 -0.01 2.62 16 22 H 0.06 2.67 2.02 -2.38 0.00 2.67 16 23 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 25 H 0.06 2.55 7.32 -2.38 -0.02 2.53 16 26 H 0.02 0.83 7.98 -2.39 -0.02 0.82 16 27 H 0.08 2.00 8.14 -2.38 -0.02 1.99 16 28 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.08 1.95 7.66 -2.39 -0.02 1.93 16 30 H 0.09 2.06 7.55 -2.39 -0.02 2.04 16 31 H 0.10 2.45 7.44 -2.39 -0.02 2.43 16 32 H 0.08 2.80 6.09 -2.39 -0.01 2.79 16 33 H 0.05 1.82 6.05 -2.39 -0.01 1.81 16 34 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 35 H 0.06 2.59 4.61 -2.39 -0.01 2.58 16 36 H 0.09 3.13 7.67 -2.39 -0.02 3.11 16 Total: -1.00 -61.61 262.63 0.88 -60.73 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 1.07 Total: 13.84 kcal Atomic # 6 Polarization: -30.26 SS G_CDS: 3.28 Total: -26.97 kcal Atomic # 7 Polarization: -74.17 SS G_CDS: -3.76 Total: -77.93 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -1.74 Total: -15.80 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -61.61 0.88 -60.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307748722.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.797 kcal (2) G-P(sol) polarization free energy of solvation -61.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds