Wall clock time and date at job start Mon Mar 30 2020 03:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47427 * 2 1 4 4 C 1.50698 * 109.47344 * 120.00230 * 2 1 3 5 5 H 1.07997 * 120.00301 * 119.99725 * 4 2 1 6 6 C 1.37885 * 119.99752 * 299.99491 * 4 2 1 7 7 N 1.31508 * 119.99852 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99859 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46902 * 60.00726 * 8 6 4 10 10 H 1.48499 * 109.46813 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47451 * 300.00395 * 8 6 4 12 12 N 1.46906 * 109.47101 * 239.99866 * 2 1 3 13 13 C 1.48747 * 110.99689 * 331.91024 * 12 2 1 14 14 C 1.55014 * 103.36439 * 158.71663 * 13 12 2 15 15 C 1.54821 * 102.94652 * 323.08903 * 14 13 12 16 16 C 1.47003 * 110.99857 * 89.03383 * 12 2 1 17 17 C 1.53980 * 110.80005 * 93.55310 * 16 12 2 18 18 C 1.55178 * 101.88333 * 260.28188 * 17 16 12 19 19 O 1.44514 * 103.61920 * 323.66312 * 18 17 16 20 20 C 1.43991 * 106.98707 * 39.49780 * 19 18 17 21 21 H 1.09000 * 109.47224 * 70.47171 * 1 2 3 22 22 H 1.09002 * 109.47179 * 190.47453 * 1 2 3 23 23 H 1.09001 * 109.47150 * 310.47548 * 1 2 3 24 24 H 0.97001 * 119.99910 * 179.97438 * 7 6 4 25 25 H 1.08996 * 110.64413 * 40.24958 * 13 12 2 26 26 H 1.09000 * 110.78062 * 277.24560 * 13 12 2 27 27 H 1.08998 * 110.71278 * 204.73174 * 14 13 12 28 28 H 1.08995 * 110.87610 * 81.52795 * 14 13 12 29 29 H 1.09001 * 110.37863 * 263.06564 * 15 14 13 30 30 H 1.08998 * 110.37582 * 140.70934 * 15 14 13 31 31 H 1.08994 * 110.94377 * 18.42976 * 17 16 12 32 32 H 1.09005 * 110.94360 * 142.10012 * 17 16 12 33 33 H 1.08998 * 110.59923 * 82.17196 * 18 17 16 34 34 H 1.09000 * 110.59877 * 204.96647 * 18 17 16 35 35 H 1.09003 * 109.95804 * 214.36253 * 20 19 18 36 36 H 1.08993 * 109.95624 * 93.15837 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9429 0.8297 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.8064 -1.1208 4.0081 10 1 1.8261 -0.4205 5.2204 11 1 1.8259 -2.5202 4.0078 12 7 2.0196 -0.6926 -1.1995 13 6 1.0422 -1.7143 -1.6613 14 6 1.4199 -1.9242 -3.1500 15 6 1.8138 -0.5001 -3.6121 16 6 2.1734 0.2436 -2.3224 17 6 3.6132 0.7854 -2.3894 18 6 3.4637 2.1745 -1.7140 19 8 2.1635 2.6279 -2.1527 20 6 1.2908 1.4827 -2.1358 21 1 -0.3634 0.3435 -0.9685 22 1 -0.3634 -1.0106 0.1868 23 1 -0.3633 0.6671 0.7817 24 1 0.7083 1.1609 3.4844 25 1 0.0229 -1.3386 -1.5729 26 1 1.1586 -2.6419 -1.1010 27 1 0.5641 -2.2906 -3.7169 28 1 2.2640 -2.6074 -3.2440 29 1 0.9725 -0.0155 -4.1077 30 1 2.6752 -0.5421 -4.2787 31 1 4.2954 0.1493 -1.8255 32 1 3.9433 0.8876 -3.4232 33 1 3.4895 2.0779 -0.6286 34 1 4.2448 2.8533 -2.0563 35 1 0.5700 1.5522 -2.9506 36 1 0.7684 1.4271 -1.1808 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307748723.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:26 Heat of formation + Delta-G solvation = -13.767501 kcal Electronic energy + Delta-G solvation = -17104.918776 eV Core-core repulsion = 14590.064044 eV Total energy + Delta-G solvation = -2514.854732 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.34836 -36.66965 -33.96973 -31.43177 -30.78705 -28.62055 -27.46429 -25.60769 -23.92831 -22.36351 -21.45821 -19.91841 -18.25130 -16.27272 -15.90916 -15.51766 -15.04674 -14.69216 -14.21275 -13.92173 -13.11646 -12.96400 -12.27925 -12.24617 -11.80102 -11.53620 -11.38890 -11.15965 -10.88515 -10.68808 -10.67592 -10.61209 -10.43946 -10.18901 -9.96534 -9.84122 -9.78462 -9.00756 -8.78570 -8.30429 -7.29868 -5.99968 -4.02447 3.33377 3.37731 3.40713 4.38598 4.49441 4.78695 5.02772 5.17213 5.29253 5.34705 5.54846 5.57123 5.69481 5.87880 5.91915 6.07409 6.12012 6.17767 6.29292 6.31704 6.43318 6.48659 6.55877 6.59014 6.61283 6.67219 6.84942 6.99433 7.29833 7.41465 7.60002 7.87484 8.09970 8.28198 8.56020 9.03271 9.62005 11.07625 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.030194 B = 0.010450 C = 0.009231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.127251 B = 2678.687228 C = 3032.542033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.193 3.807 3 H 0.046 0.954 4 C -0.494 4.494 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.491 5.491 13 C 0.031 3.969 14 C -0.127 4.127 15 C -0.115 4.115 16 C 0.062 3.938 17 C -0.133 4.133 18 C 0.045 3.955 19 O -0.387 6.387 20 C 0.001 3.999 21 H 0.016 0.984 22 H 0.040 0.960 23 H 0.082 0.918 24 H 0.260 0.740 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.295 -1.561 -9.764 9.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.087 3.913 3 H 0.063 0.937 4 C -0.533 4.533 5 H 0.080 0.920 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.215 5.215 13 C -0.097 4.097 14 C -0.165 4.165 15 C -0.153 4.153 16 C -0.029 4.029 17 C -0.171 4.171 18 C -0.032 4.032 19 O -0.306 6.306 20 C -0.076 4.076 21 H 0.035 0.965 22 H 0.059 0.941 23 H 0.101 0.899 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.661 -1.459 -9.515 9.769 hybrid contribution -0.479 -0.248 0.780 0.948 sum 1.182 -1.706 -8.736 8.979 Atomic orbital electron populations 1.22583 1.00374 1.01300 0.98561 1.19602 0.90064 0.94899 0.86730 0.93677 1.21039 1.30565 1.12407 0.89301 0.92011 1.24937 0.95320 0.95163 0.98963 1.69893 1.37075 1.23038 1.23526 0.86578 0.79177 0.79606 0.82124 1.20299 1.21475 1.20414 1.64986 1.43239 1.10850 1.02452 1.23367 0.95915 0.97189 0.93186 1.22582 1.00551 0.96430 0.96901 1.22424 1.00804 0.95909 0.96191 1.22478 0.94742 0.92959 0.92755 1.23015 0.96887 0.96786 1.00405 1.23629 0.85269 0.94645 0.99648 1.88805 1.21144 1.32244 1.88382 1.24653 0.93709 0.85242 1.03993 0.96545 0.94133 0.89897 0.92973 0.92752 0.90665 0.92077 0.91440 0.91904 0.91469 0.89170 0.91471 0.91203 0.90116 0.91452 0.87665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.97 6.31 37.15 0.23 -3.74 16 2 C 0.19 4.71 1.83 -68.87 -0.13 4.59 16 3 H 0.05 1.21 4.74 -51.93 -0.25 0.96 16 4 C -0.49 -13.44 8.81 -34.44 -0.30 -13.74 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.56 5.30 -17.82 -0.09 1.47 16 7 N -0.90 -25.35 11.45 55.43 0.63 -24.72 16 8 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.49 -10.30 4.75 -208.70 -0.99 -11.29 16 13 C 0.03 0.58 5.81 -1.74 -0.01 0.57 16 14 C -0.13 -1.89 7.08 -24.71 -0.17 -2.06 16 15 C -0.12 -1.74 6.23 -25.69 -0.16 -1.90 16 16 C 0.06 1.13 0.83 -130.81 -0.11 1.02 16 17 C -0.13 -2.26 6.38 -25.07 -0.16 -2.42 16 18 C 0.04 0.81 7.32 38.31 0.28 1.09 16 19 O -0.39 -7.79 11.54 -35.23 -0.41 -8.19 16 20 C 0.00 0.02 5.57 37.30 0.21 0.23 16 21 H 0.02 0.34 5.26 -51.93 -0.27 0.06 16 22 H 0.04 0.94 7.03 -51.93 -0.37 0.58 16 23 H 0.08 2.15 6.43 -51.93 -0.33 1.82 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.05 1.02 5.05 -51.93 -0.26 0.76 16 26 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.89 7.15 -51.93 -0.37 0.52 16 30 H 0.07 0.92 7.35 -51.93 -0.38 0.54 16 31 H 0.09 1.60 8.05 -51.93 -0.42 1.18 16 32 H 0.07 0.99 7.48 -51.93 -0.39 0.60 16 33 H 0.07 1.43 7.04 -51.93 -0.37 1.06 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.07 1.19 7.13 -51.93 -0.37 0.81 16 36 H 0.11 2.32 3.00 -51.93 -0.16 2.16 16 LS Contribution 264.49 15.07 3.99 3.99 Total: -1.00 -28.35 264.49 -7.38 -35.74 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -5.17 Total: 3.02 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -0.42 Total: -14.90 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: -0.36 Total: -36.01 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -0.41 Total: -8.19 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.35 -7.38 -35.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307748723.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.969 kcal (2) G-P(sol) polarization free energy of solvation -28.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds