Wall clock time and date at job start Mon Mar 30 2020 03:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47427 * 2 1 4 4 C 1.50698 * 109.47344 * 120.00230 * 2 1 3 5 5 H 1.07997 * 120.00301 * 119.99725 * 4 2 1 6 6 C 1.37885 * 119.99752 * 299.99491 * 4 2 1 7 7 N 1.31508 * 119.99852 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99859 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46902 * 60.00726 * 8 6 4 10 10 H 1.48499 * 109.46813 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47451 * 300.00395 * 8 6 4 12 12 N 1.46906 * 109.47101 * 239.99866 * 2 1 3 13 13 C 1.48747 * 110.99689 * 331.91024 * 12 2 1 14 14 C 1.55014 * 103.36439 * 158.71663 * 13 12 2 15 15 C 1.54821 * 102.94652 * 323.08903 * 14 13 12 16 16 C 1.47003 * 110.99857 * 89.03383 * 12 2 1 17 17 C 1.53980 * 110.80005 * 93.55310 * 16 12 2 18 18 C 1.55178 * 101.88333 * 260.28188 * 17 16 12 19 19 O 1.44514 * 103.61920 * 323.66312 * 18 17 16 20 20 C 1.43991 * 106.98707 * 39.49780 * 19 18 17 21 21 H 1.09000 * 109.47224 * 70.47171 * 1 2 3 22 22 H 1.09002 * 109.47179 * 190.47453 * 1 2 3 23 23 H 1.09001 * 109.47150 * 310.47548 * 1 2 3 24 24 H 0.97001 * 119.99910 * 179.97438 * 7 6 4 25 25 H 1.08996 * 110.64413 * 40.24958 * 13 12 2 26 26 H 1.09000 * 110.78062 * 277.24560 * 13 12 2 27 27 H 1.08998 * 110.71278 * 204.73174 * 14 13 12 28 28 H 1.08995 * 110.87610 * 81.52795 * 14 13 12 29 29 H 1.09001 * 110.37863 * 263.06564 * 15 14 13 30 30 H 1.08998 * 110.37582 * 140.70934 * 15 14 13 31 31 H 1.08994 * 110.94377 * 18.42976 * 17 16 12 32 32 H 1.09005 * 110.94360 * 142.10012 * 17 16 12 33 33 H 1.08998 * 110.59923 * 82.17196 * 18 17 16 34 34 H 1.09000 * 110.59877 * 204.96647 * 18 17 16 35 35 H 1.09003 * 109.95804 * 214.36253 * 20 19 18 36 36 H 1.08993 * 109.95624 * 93.15837 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9429 0.8297 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.8064 -1.1208 4.0081 10 1 1.8261 -0.4205 5.2204 11 1 1.8259 -2.5202 4.0078 12 7 2.0196 -0.6926 -1.1995 13 6 1.0422 -1.7143 -1.6613 14 6 1.4199 -1.9242 -3.1500 15 6 1.8138 -0.5001 -3.6121 16 6 2.1734 0.2436 -2.3224 17 6 3.6132 0.7854 -2.3894 18 6 3.4637 2.1745 -1.7140 19 8 2.1635 2.6279 -2.1527 20 6 1.2908 1.4827 -2.1358 21 1 -0.3634 0.3435 -0.9685 22 1 -0.3634 -1.0106 0.1868 23 1 -0.3633 0.6671 0.7817 24 1 0.7083 1.1609 3.4844 25 1 0.0229 -1.3386 -1.5729 26 1 1.1586 -2.6419 -1.1010 27 1 0.5641 -2.2906 -3.7169 28 1 2.2640 -2.6074 -3.2440 29 1 0.9725 -0.0155 -4.1077 30 1 2.6752 -0.5421 -4.2787 31 1 4.2954 0.1493 -1.8255 32 1 3.9433 0.8876 -3.4232 33 1 3.4895 2.0779 -0.6286 34 1 4.2448 2.8533 -2.0563 35 1 0.5700 1.5522 -2.9506 36 1 0.7684 1.4271 -1.1808 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307748723.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:26 Heat of formation + Delta-G solvation = -33.027526 kcal Electronic energy + Delta-G solvation = -17105.753953 eV Core-core repulsion = 14590.064044 eV Total energy + Delta-G solvation = -2515.689909 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.85375 -38.20956 -35.77232 -33.29309 -32.19592 -30.08110 -29.15759 -27.57465 -25.48426 -23.90359 -22.95301 -21.46069 -19.82368 -18.23622 -17.49480 -17.00047 -16.83762 -16.16053 -15.92656 -15.44371 -14.66641 -14.61077 -13.97279 -13.61653 -13.46507 -13.17177 -13.04542 -12.84790 -12.63949 -12.38778 -12.23083 -12.19478 -11.97826 -11.70872 -11.68020 -11.42530 -11.29312 -10.92224 -10.58481 -10.20897 -8.95204 -8.09928 -6.19850 1.41297 1.42413 1.50216 2.42260 2.99372 3.18605 3.37698 3.69052 3.76799 3.93914 4.17503 4.26440 4.34330 4.46093 4.50841 4.66601 4.74243 4.76876 4.84988 4.89778 4.98196 4.99324 5.01811 5.09806 5.13212 5.21195 5.32351 5.38996 5.50828 5.67797 5.78637 5.89455 6.26222 6.46338 6.69846 6.92161 7.48898 8.95628 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.030194 B = 0.010450 C = 0.009231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.127251 B = 2678.687228 C = 3032.542033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.203 3.797 3 H 0.016 0.984 4 C -0.511 4.511 5 H 0.051 0.949 6 C 0.011 3.989 7 N -0.922 5.922 8 Si 0.956 3.044 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.272 1.272 12 N -0.506 5.506 13 C 0.024 3.976 14 C -0.114 4.114 15 C -0.109 4.109 16 C 0.055 3.945 17 C -0.126 4.126 18 C 0.042 3.958 19 O -0.400 6.400 20 C 0.000 4.000 21 H 0.039 0.961 22 H 0.034 0.966 23 H 0.051 0.949 24 H 0.260 0.740 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.032 0.968 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 -2.424 -11.704 12.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.096 3.904 3 H 0.034 0.966 4 C -0.550 4.550 5 H 0.069 0.931 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.782 3.218 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.229 5.229 13 C -0.103 4.103 14 C -0.152 4.152 15 C -0.147 4.147 16 C -0.036 4.036 17 C -0.164 4.164 18 C -0.034 4.034 19 O -0.320 6.320 20 C -0.077 4.077 21 H 0.057 0.943 22 H 0.053 0.947 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.107 0.893 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.120 0.880 33 H 0.051 0.949 34 H 0.131 0.869 35 H 0.107 0.893 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.202 -2.333 -11.469 11.909 hybrid contribution -0.635 0.053 1.377 1.517 sum 1.566 -2.280 -10.093 10.465 Atomic orbital electron populations 1.22363 0.99935 1.00010 0.98656 1.19275 0.90168 0.93273 0.87690 0.96598 1.21354 1.30473 1.12229 0.90951 0.93053 1.25673 0.95527 0.95825 1.01730 1.70030 1.38014 1.24199 1.23943 0.85637 0.78691 0.78691 0.78747 1.19885 1.21131 1.19751 1.64866 1.43788 1.11720 1.02539 1.23426 0.95117 0.95856 0.95940 1.22536 1.01975 0.96732 0.93923 1.22440 1.02419 0.95254 0.94611 1.22654 0.95239 0.92309 0.93395 1.23034 0.96036 0.95352 1.01981 1.23696 0.85410 0.96577 0.97760 1.88784 1.22006 1.32994 1.88182 1.24606 0.94202 0.85892 1.03024 0.94275 0.94724 0.93011 0.93114 0.93367 0.91942 0.89287 0.90635 0.90396 0.89088 0.90239 0.88041 0.94927 0.86895 0.89269 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.26 6.31 71.98 0.45 -6.81 16 2 C 0.20 10.18 1.83 44.17 0.08 10.26 16 3 H 0.02 0.91 4.74 -2.39 -0.01 0.89 16 4 C -0.51 -28.53 8.81 25.60 0.23 -28.30 16 5 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 6 C 0.01 0.60 5.30 84.66 0.45 1.05 16 7 N -0.92 -53.78 11.45 21.45 0.25 -53.53 16 8 Si 0.96 44.47 29.54 68.60 2.03 46.50 16 9 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 10 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 N -0.51 -21.01 4.75 -814.19 -3.87 -24.88 16 13 C 0.02 0.87 5.81 86.63 0.50 1.37 16 14 C -0.11 -2.98 7.08 31.91 0.23 -2.75 16 15 C -0.11 -2.86 6.23 31.27 0.19 -2.66 16 16 C 0.05 1.90 0.83 3.98 0.00 1.91 16 17 C -0.13 -4.04 6.38 31.67 0.20 -3.83 16 18 C 0.04 1.49 7.32 72.73 0.53 2.02 16 19 O -0.40 -15.84 11.54 -148.98 -1.72 -17.56 16 20 C 0.00 0.00 5.57 72.07 0.40 0.40 16 21 H 0.04 1.65 5.26 -2.39 -0.01 1.64 16 22 H 0.03 1.64 7.03 -2.39 -0.02 1.62 16 23 H 0.05 2.79 6.43 -2.39 -0.02 2.78 16 24 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 25 H 0.05 1.77 5.05 -2.39 -0.01 1.76 16 26 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.08 1.84 7.15 -2.39 -0.02 1.82 16 30 H 0.09 2.00 7.35 -2.39 -0.02 1.98 16 31 H 0.08 2.72 8.05 -2.39 -0.02 2.70 16 32 H 0.10 2.56 7.48 -2.38 -0.02 2.54 16 33 H 0.03 1.39 7.04 -2.39 -0.02 1.37 16 34 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 35 H 0.09 2.94 7.13 -2.39 -0.02 2.92 16 36 H 0.07 3.22 3.00 -2.39 -0.01 3.21 16 Total: -1.00 -62.41 264.49 1.02 -61.39 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 1.07 Total: 15.44 kcal Atomic # 6 Polarization: -30.62 SS G_CDS: 3.27 Total: -27.35 kcal Atomic # 7 Polarization: -74.78 SS G_CDS: -3.62 Total: -78.41 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -1.72 Total: -17.56 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -62.41 1.02 -61.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307748723.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.359 kcal (2) G-P(sol) polarization free energy of solvation -62.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds