Wall clock time and date at job start Mon Mar 30 2020 02:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.67423 * 2 1 4 4 C 1.53352 * 109.70383 * 120.51323 * 2 1 3 5 5 C 1.52915 * 108.67719 * 187.28366 * 4 2 1 6 6 N 1.45756 * 110.48731 * 309.24781 * 5 4 2 7 7 C 1.46494 * 117.94930 * 199.09618 * 6 5 4 8 8 C 1.53002 * 109.47116 * 269.97809 * 7 6 5 9 9 C 1.53005 * 109.46872 * 179.97438 * 8 7 6 10 10 C 1.50707 * 109.46804 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00109 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99884 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99965 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99921 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47374 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47464 * 119.99686 * 14 12 10 17 17 H 1.48507 * 109.47265 * 239.99649 * 14 12 10 18 18 C 1.33359 * 124.10453 * 19.07185 * 6 5 4 19 19 O 1.21284 * 118.24437 * 178.06470 * 18 6 5 20 20 C 1.50176 * 123.50823 * 357.77900 * 18 6 5 21 21 H 1.08997 * 109.47513 * 180.50328 * 1 2 3 22 22 H 1.09003 * 109.47587 * 300.50405 * 1 2 3 23 23 H 1.08996 * 109.47058 * 60.50337 * 1 2 3 24 24 H 1.09001 * 109.60089 * 307.03927 * 4 2 1 25 25 H 1.09000 * 109.59993 * 67.52306 * 4 2 1 26 26 H 1.09001 * 109.30075 * 69.55333 * 5 4 2 27 27 H 1.09002 * 109.29946 * 189.14332 * 5 4 2 28 28 H 1.08998 * 109.47072 * 29.97471 * 7 6 5 29 29 H 1.09000 * 109.47646 * 149.97289 * 7 6 5 30 30 H 1.08998 * 109.46874 * 299.99783 * 8 7 6 31 31 H 1.08993 * 109.47099 * 59.99911 * 8 7 6 32 32 H 1.08998 * 109.47477 * 299.99761 * 9 8 7 33 33 H 1.09001 * 109.46953 * 60.00509 * 9 8 7 34 34 H 0.96995 * 119.99783 * 180.02562 * 13 12 10 35 35 H 1.09000 * 109.39871 * 137.70962 * 20 18 6 36 36 H 1.08997 * 109.39928 * 257.53917 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8969 1.0263 0.0000 4 6 2.0470 -0.7330 1.2438 5 6 3.5649 -0.5629 1.3168 6 7 4.1799 -0.9184 0.0441 7 6 5.6113 -1.2300 0.0365 8 6 6.4108 0.0511 -0.2093 9 6 7.9059 -0.2744 -0.2165 10 6 8.6934 0.9874 -0.4593 11 1 8.1791 1.9273 -0.5952 12 6 10.0705 0.9418 -0.5088 13 7 10.6968 -0.2029 -0.3438 14 14 11.0467 2.5058 -0.8090 15 1 10.1130 3.6506 -0.9609 16 1 11.9511 2.7536 0.3425 17 1 11.8520 2.3567 -2.0478 18 6 3.5211 -0.9782 -1.1139 19 8 4.1465 -1.2513 -2.1165 20 6 2.0453 -0.7316 -1.2418 21 1 -0.3634 -1.0276 0.0090 22 1 -0.3634 0.5216 0.8854 23 1 -0.3633 0.5060 -0.8944 24 1 1.5879 -0.3076 2.1362 25 1 1.8007 -1.7925 1.1726 26 1 3.8001 0.4748 1.5531 27 1 3.9627 -1.2097 2.0989 28 1 5.8953 -1.6566 0.9985 29 1 5.8227 -1.9480 -0.7559 30 1 6.1268 0.4777 -1.1712 31 1 6.1995 0.7689 0.5832 32 1 8.1896 -0.7007 0.7456 33 1 8.1175 -0.9924 -1.0089 34 1 11.6656 -0.2349 -0.3783 35 1 1.8552 -0.1227 -2.1256 36 1 1.5261 -1.6849 -1.3404 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308332278.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:48 Heat of formation + Delta-G solvation = -65.376501 kcal Electronic energy + Delta-G solvation = -15615.538542 eV Core-core repulsion = 13098.445876 eV Total energy + Delta-G solvation = -2517.092666 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.33689 -36.69975 -35.44019 -33.41435 -31.40146 -29.64130 -28.41705 -26.14571 -23.82983 -23.12576 -21.11788 -20.28187 -18.42897 -16.56498 -16.42270 -15.86916 -15.38071 -14.66771 -14.39667 -14.34072 -13.71046 -13.28051 -13.19976 -12.68602 -12.46146 -12.22826 -11.82466 -11.69357 -11.45225 -11.11318 -10.93487 -10.86792 -10.72665 -10.66300 -10.51716 -9.63114 -9.61758 -9.22279 -9.08909 -8.30138 -8.28636 -5.95092 -3.96868 2.91947 3.28979 3.34396 3.41565 3.46392 4.48327 4.50668 4.51780 4.54274 4.71830 5.18533 5.25128 5.33893 5.40689 5.43105 5.45565 5.60185 5.64712 5.68913 5.79330 5.87281 5.88177 6.04481 6.13071 6.29453 6.49247 6.73140 7.04522 7.17852 7.72520 7.75788 7.89868 8.05124 8.45382 8.50649 9.09926 9.66719 11.16434 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.048382 B = 0.005073 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.594034 B = 5517.584963 C = 5553.952679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.079 0.921 4 C -0.130 4.130 5 C 0.112 3.888 6 N -0.601 5.601 7 C 0.106 3.894 8 C -0.119 4.119 9 C 0.023 3.977 10 C -0.517 4.517 11 H 0.054 0.946 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.509 3.491 19 O -0.551 6.551 20 C -0.128 4.128 21 H 0.056 0.944 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.015 0.985 33 H 0.018 0.982 34 H 0.259 0.741 35 H 0.096 0.904 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.173 -1.122 4.679 20.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.097 0.903 4 C -0.168 4.168 5 C -0.011 4.011 6 N -0.333 5.333 7 C -0.016 4.016 8 C -0.158 4.158 9 C -0.014 4.014 10 C -0.555 4.555 11 H 0.072 0.928 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.720 3.280 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C 0.297 3.703 19 O -0.430 6.430 20 C -0.168 4.168 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.101 0.899 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.034 0.966 33 H 0.036 0.964 34 H 0.069 0.931 35 H 0.115 0.885 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.700 -1.343 4.169 20.181 hybrid contribution 0.663 0.866 -0.044 1.091 sum -19.038 -0.477 4.125 19.485 Atomic orbital electron populations 1.21807 0.94396 1.01994 1.02019 1.21269 0.96177 1.00089 0.94103 0.90253 1.21964 0.94738 1.01438 0.98649 1.21395 0.92813 1.01171 0.85751 1.47464 1.10775 1.67733 1.07360 1.21834 0.77787 0.99728 1.02249 1.21911 0.98281 0.95095 1.00467 1.19047 0.88103 0.97100 0.97194 1.21274 0.91308 0.94403 1.48517 0.92760 1.25022 0.97960 0.96068 0.95457 1.69978 1.08373 1.24627 1.50597 0.86542 0.80058 0.83663 0.77775 1.19793 1.21038 1.21000 1.20066 0.89832 0.77377 0.83047 1.90744 1.68263 1.48740 1.35220 1.21723 0.92419 1.02778 0.99870 0.92515 0.92350 0.92388 0.89939 0.91087 0.91584 0.90640 0.91151 0.90015 0.92970 0.93597 0.96616 0.96367 0.93106 0.88533 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.20 37.15 0.34 -0.62 16 2 C -0.10 -0.86 2.80 -90.41 -0.25 -1.11 16 3 H 0.08 0.75 8.13 -51.93 -0.42 0.33 16 4 C -0.13 -1.08 5.32 -26.59 -0.14 -1.22 16 5 C 0.11 1.25 6.39 -4.49 -0.03 1.22 16 6 N -0.60 -9.30 2.81 -174.96 -0.49 -9.80 16 7 C 0.11 1.96 5.20 -4.04 -0.02 1.94 16 8 C -0.12 -2.64 5.47 -26.73 -0.15 -2.78 16 9 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 10 C -0.52 -15.25 9.11 -34.44 -0.31 -15.56 16 11 H 0.05 1.57 7.74 -52.49 -0.41 1.16 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.90 -27.65 13.29 55.43 0.74 -26.91 16 14 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 15 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 18 C 0.51 8.33 7.46 -11.87 -0.09 8.24 16 19 O -0.55 -11.70 16.21 5.55 0.09 -11.61 16 20 C -0.13 -1.44 5.35 -28.10 -0.15 -1.59 16 21 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 22 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.58 8.12 -51.93 -0.42 0.15 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 0.76 7.91 -51.93 -0.41 0.35 16 28 H 0.07 1.17 7.86 -51.93 -0.41 0.77 16 29 H 0.08 1.68 7.20 -51.93 -0.37 1.30 16 30 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 35 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.09 0.93 8.10 -51.93 -0.42 0.51 16 LS Contribution 294.68 15.07 4.44 4.44 Total: -1.00 -33.96 294.68 -7.51 -41.47 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: -6.23 Total: -5.40 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -1.04 Total: -9.45 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.24 Total: -36.71 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.96 -7.51 -41.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308332278.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.907 kcal (2) G-P(sol) polarization free energy of solvation -33.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds