Wall clock time and date at job start Mon Mar 30 2020 02:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.67423 * 2 1 4 4 C 1.53352 * 109.70383 * 120.51323 * 2 1 3 5 5 C 1.52915 * 108.67719 * 187.28366 * 4 2 1 6 6 N 1.45756 * 110.48731 * 309.24781 * 5 4 2 7 7 C 1.46494 * 117.94930 * 199.09618 * 6 5 4 8 8 C 1.53002 * 109.47116 * 269.97809 * 7 6 5 9 9 C 1.53005 * 109.46872 * 179.97438 * 8 7 6 10 10 C 1.50707 * 109.46804 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00109 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99884 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99965 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99921 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47374 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47464 * 119.99686 * 14 12 10 17 17 H 1.48507 * 109.47265 * 239.99649 * 14 12 10 18 18 C 1.33359 * 124.10453 * 19.07185 * 6 5 4 19 19 O 1.21284 * 118.24437 * 178.06470 * 18 6 5 20 20 C 1.50176 * 123.50823 * 357.77900 * 18 6 5 21 21 H 1.08997 * 109.47513 * 180.50328 * 1 2 3 22 22 H 1.09003 * 109.47587 * 300.50405 * 1 2 3 23 23 H 1.08996 * 109.47058 * 60.50337 * 1 2 3 24 24 H 1.09001 * 109.60089 * 307.03927 * 4 2 1 25 25 H 1.09000 * 109.59993 * 67.52306 * 4 2 1 26 26 H 1.09001 * 109.30075 * 69.55333 * 5 4 2 27 27 H 1.09002 * 109.29946 * 189.14332 * 5 4 2 28 28 H 1.08998 * 109.47072 * 29.97471 * 7 6 5 29 29 H 1.09000 * 109.47646 * 149.97289 * 7 6 5 30 30 H 1.08998 * 109.46874 * 299.99783 * 8 7 6 31 31 H 1.08993 * 109.47099 * 59.99911 * 8 7 6 32 32 H 1.08998 * 109.47477 * 299.99761 * 9 8 7 33 33 H 1.09001 * 109.46953 * 60.00509 * 9 8 7 34 34 H 0.96995 * 119.99783 * 180.02562 * 13 12 10 35 35 H 1.09000 * 109.39871 * 137.70962 * 20 18 6 36 36 H 1.08997 * 109.39928 * 257.53917 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8969 1.0263 0.0000 4 6 2.0470 -0.7330 1.2438 5 6 3.5649 -0.5629 1.3168 6 7 4.1799 -0.9184 0.0441 7 6 5.6113 -1.2300 0.0365 8 6 6.4108 0.0511 -0.2093 9 6 7.9059 -0.2744 -0.2165 10 6 8.6934 0.9874 -0.4593 11 1 8.1791 1.9273 -0.5952 12 6 10.0705 0.9418 -0.5088 13 7 10.6968 -0.2029 -0.3438 14 14 11.0467 2.5058 -0.8090 15 1 10.1130 3.6506 -0.9609 16 1 11.9511 2.7536 0.3425 17 1 11.8520 2.3567 -2.0478 18 6 3.5211 -0.9782 -1.1139 19 8 4.1465 -1.2513 -2.1165 20 6 2.0453 -0.7316 -1.2418 21 1 -0.3634 -1.0276 0.0090 22 1 -0.3634 0.5216 0.8854 23 1 -0.3633 0.5060 -0.8944 24 1 1.5879 -0.3076 2.1362 25 1 1.8007 -1.7925 1.1726 26 1 3.8001 0.4748 1.5531 27 1 3.9627 -1.2097 2.0989 28 1 5.8953 -1.6566 0.9985 29 1 5.8227 -1.9480 -0.7559 30 1 6.1268 0.4777 -1.1712 31 1 6.1995 0.7689 0.5832 32 1 8.1896 -0.7007 0.7456 33 1 8.1175 -0.9924 -1.0089 34 1 11.6656 -0.2349 -0.3783 35 1 1.8552 -0.1227 -2.1256 36 1 1.5261 -1.6849 -1.3404 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308332278.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:48 Heat of formation + Delta-G solvation = -86.807008 kcal Electronic energy + Delta-G solvation = -15616.467839 eV Core-core repulsion = 13098.445876 eV Total energy + Delta-G solvation = -2518.021963 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.54052 -37.78878 -36.90018 -35.29962 -33.23015 -30.67375 -29.60304 -27.78396 -24.98308 -24.69809 -22.33257 -21.88184 -19.51134 -18.55821 -17.62052 -17.37662 -16.59534 -16.44504 -15.55935 -15.47423 -15.29266 -14.59109 -14.21709 -14.08677 -13.84524 -13.36595 -13.14562 -12.96818 -12.72371 -12.65708 -12.58988 -12.44234 -12.09520 -11.62703 -11.60193 -11.51461 -11.48368 -11.28151 -10.61863 -10.58932 -9.67214 -8.22779 -6.34563 1.37236 1.38718 1.51888 1.64348 2.08086 2.39437 3.09829 3.60709 3.77654 3.80863 3.88122 4.14696 4.28329 4.45791 4.50292 4.58822 4.59993 4.71020 4.82292 4.83988 4.85709 4.95568 5.03477 5.08957 5.14200 5.20695 5.36458 5.43287 5.49272 5.55271 5.67698 5.80069 6.21220 6.55303 6.80821 7.20584 7.34551 8.89351 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.048382 B = 0.005073 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.594034 B = 5517.584963 C = 5553.952679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 H 0.072 0.928 4 C -0.122 4.122 5 C 0.101 3.899 6 N -0.598 5.598 7 C 0.115 3.885 8 C -0.100 4.100 9 C 0.028 3.972 10 C -0.545 4.545 11 H 0.055 0.945 12 C 0.000 4.000 13 N -0.932 5.932 14 Si 0.968 3.032 15 H -0.264 1.264 16 H -0.272 1.272 17 H -0.278 1.278 18 C 0.498 3.502 19 O -0.612 6.612 20 C -0.120 4.120 21 H 0.064 0.936 22 H 0.072 0.928 23 H 0.058 0.942 24 H 0.112 0.888 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.054 0.946 30 H 0.027 0.973 31 H 0.059 0.941 32 H 0.005 0.995 33 H -0.016 1.016 34 H 0.265 0.735 35 H 0.097 0.903 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.896 0.033 6.107 22.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 H 0.090 0.910 4 C -0.159 4.159 5 C -0.020 4.020 6 N -0.329 5.329 7 C -0.009 4.009 8 C -0.139 4.139 9 C -0.010 4.010 10 C -0.583 4.583 11 H 0.073 0.927 12 C -0.198 4.198 13 N -0.572 5.572 14 Si 0.792 3.208 15 H -0.188 1.188 16 H -0.197 1.197 17 H -0.204 1.204 18 C 0.288 3.712 19 O -0.495 6.495 20 C -0.159 4.159 21 H 0.083 0.917 22 H 0.091 0.909 23 H 0.077 0.923 24 H 0.131 0.869 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.023 0.977 33 H 0.003 0.997 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -21.464 -0.178 5.640 22.194 hybrid contribution 1.214 0.474 -0.477 1.388 sum -20.250 0.296 5.163 20.900 Atomic orbital electron populations 1.21761 0.92209 1.02841 1.02814 1.21270 0.97823 0.99262 0.92877 0.90951 1.21981 0.92219 1.02137 0.99583 1.21771 0.94971 1.01573 0.83731 1.47560 1.09297 1.66970 1.09055 1.21486 0.79852 0.97153 1.02368 1.21637 0.95655 0.97079 0.99530 1.18930 0.91270 0.95637 0.95154 1.21668 0.92300 0.95120 1.49243 0.92684 1.25997 0.99114 0.99918 0.94739 1.70101 1.09021 1.27079 1.51013 0.85361 0.78359 0.79054 0.78035 1.18833 1.19678 1.20407 1.21098 0.91876 0.75961 0.82235 1.90715 1.69968 1.51498 1.37320 1.21753 0.88477 1.04193 1.01502 0.91650 0.90940 0.92285 0.86933 0.90346 0.91351 0.89122 0.88862 0.92755 0.95447 0.92213 0.97708 0.99744 0.92626 0.88478 0.86814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.20 71.98 0.66 -0.68 16 2 C -0.09 -1.38 2.80 -10.66 -0.03 -1.41 16 3 H 0.07 1.19 8.13 -2.39 -0.02 1.17 16 4 C -0.12 -1.59 5.32 30.68 0.16 -1.42 16 5 C 0.10 2.02 6.39 86.49 0.55 2.57 16 6 N -0.60 -18.25 2.81 -826.64 -2.32 -20.58 16 7 C 0.11 4.35 5.20 86.38 0.45 4.80 16 8 C -0.10 -4.58 5.47 30.60 0.17 -4.41 16 9 C 0.03 1.56 4.97 29.85 0.15 1.71 16 10 C -0.55 -32.84 9.11 25.60 0.23 -32.61 16 11 H 0.05 3.22 7.74 -2.91 -0.02 3.20 16 12 C 0.00 0.01 5.46 84.65 0.46 0.47 16 13 N -0.93 -58.44 13.29 21.45 0.28 -58.15 16 14 Si 0.97 45.80 29.54 68.60 2.03 47.83 16 15 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 16 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 17 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 18 C 0.50 16.41 7.46 87.71 0.65 17.06 16 19 O -0.61 -27.21 16.21 -3.04 -0.05 -27.26 16 20 C -0.12 -2.53 5.35 29.71 0.16 -2.37 16 21 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 22 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 23 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 24 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.08 0.96 8.12 -2.39 -0.02 0.94 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.09 1.56 7.91 -2.39 -0.02 1.55 16 28 H 0.09 3.08 7.86 -2.39 -0.02 3.06 16 29 H 0.05 2.36 7.20 -2.39 -0.02 2.34 16 30 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 33 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 34 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 35 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.11 1.99 8.10 -2.39 -0.02 1.97 16 Total: -1.00 -76.21 294.68 4.58 -71.63 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: 1.02 Total: 2.82 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: 3.62 Total: -16.29 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -2.04 Total: -78.73 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.05 Total: -27.26 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -76.21 4.58 -71.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308332278.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.179 kcal (2) G-P(sol) polarization free energy of solvation -76.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds