Wall clock time and date at job start Mon Mar 30 2020 03:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47156 * 2 1 4 4 C 1.50694 * 109.47278 * 240.00321 * 2 1 3 5 5 H 1.08007 * 119.99897 * 240.00046 * 4 2 1 6 6 C 1.37874 * 120.00477 * 59.99468 * 4 2 1 7 7 N 1.31514 * 119.99687 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00307 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47471 * 59.99826 * 8 6 4 10 10 H 1.48499 * 109.47122 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47065 * 299.99692 * 8 6 4 12 12 N 1.46901 * 109.47251 * 119.99832 * 2 1 3 13 13 C 1.46899 * 111.00203 * 275.00069 * 12 2 1 14 14 H 1.09007 * 115.55032 * 9.27851 * 13 12 2 15 15 C 1.53000 * 117.50080 * 223.61000 * 13 12 2 16 16 C 1.53002 * 60.02940 * 252.49785 * 15 13 12 17 17 H 1.09000 * 117.49996 * 107.50493 * 16 15 13 18 18 C 1.53002 * 117.49773 * 252.51785 * 16 15 13 19 19 H 1.09008 * 110.32994 * 10.86232 * 18 16 15 20 20 C 1.54476 * 110.37561 * 248.61043 * 18 16 15 21 21 C 1.54506 * 104.06370 * 217.18766 * 20 18 16 22 22 C 1.54478 * 104.06313 * 0.02562 * 21 20 18 23 23 O 1.44424 * 104.80615 * 23.97082 * 22 21 20 24 24 H 1.09005 * 109.46862 * 299.99829 * 1 2 3 25 25 H 1.09002 * 109.47488 * 59.99912 * 1 2 3 26 26 H 1.09004 * 109.47119 * 180.02562 * 1 2 3 27 27 H 0.97002 * 119.99939 * 179.97438 * 7 6 4 28 28 H 1.00896 * 110.99881 * 151.04804 * 12 2 1 29 29 H 1.09002 * 117.49833 * 359.97438 * 15 13 12 30 30 H 1.09002 * 117.49953 * 144.99931 * 15 13 12 31 31 H 1.08992 * 110.51047 * 335.83794 * 20 18 16 32 32 H 1.09000 * 110.51205 * 98.40869 * 20 18 16 33 33 H 1.09001 * 110.50989 * 118.64574 * 21 20 18 34 34 H 1.09000 * 110.51274 * 241.21559 * 21 20 18 35 35 H 1.08992 * 110.37381 * 142.80853 * 22 21 20 36 36 H 1.08998 * 110.37064 * 265.03463 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.8260 -2.5201 -4.0077 10 1 1.8269 -0.4199 -5.2204 11 1 3.8064 -1.1207 -4.0081 12 7 2.0196 -0.6925 1.1995 13 6 2.0825 0.2226 2.3469 14 1 1.6230 1.1994 2.1950 15 6 3.3266 0.1577 3.2351 16 6 1.9929 -0.3909 3.7464 17 1 1.8875 -1.4736 3.8158 18 6 1.2651 0.4136 4.8252 19 1 1.7298 1.3923 4.9459 20 6 1.2725 -0.3542 6.1656 21 6 -0.1133 -0.0527 6.7786 22 6 -0.7944 0.8611 5.7358 23 8 -0.1325 0.5554 4.4890 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7094 1.1618 -3.4844 28 1 2.9173 -1.1204 1.0287 29 1 4.0983 -0.5644 2.9682 30 1 3.6856 1.0916 3.6675 31 1 1.3890 -1.4239 5.9923 32 1 2.0675 0.0156 6.8132 33 1 -0.6820 -0.9735 6.9084 34 1 -0.0050 0.4656 7.7314 35 1 -1.8577 0.6317 5.6671 36 1 -0.6491 1.9092 5.9973 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308661913.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:44 Heat of formation + Delta-G solvation = -27.421898 kcal Electronic energy + Delta-G solvation = -15642.698513 eV Core-core repulsion = 13127.251682 eV Total energy + Delta-G solvation = -2515.446831 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.44798 -37.14840 -34.34789 -32.01878 -31.59597 -29.00196 -27.17763 -25.09464 -23.24693 -21.72405 -20.88304 -20.16907 -19.63905 -16.51741 -16.27053 -15.82206 -15.27704 -14.77958 -14.28580 -13.85447 -13.65784 -13.18825 -12.45275 -12.18293 -11.89926 -11.70893 -11.39003 -11.21364 -11.15415 -10.90486 -10.73626 -10.63684 -10.59234 -10.22489 -10.07497 -9.77452 -9.60061 -9.53965 -8.76249 -8.40589 -7.10494 -5.98495 -4.05274 3.33708 3.37983 3.40799 3.80344 4.41365 4.53802 4.58213 4.68014 4.90381 5.01021 5.20786 5.31141 5.36516 5.45217 5.52071 5.64097 5.70823 5.74280 5.84044 5.92218 5.97195 6.07675 6.14289 6.44882 6.62117 6.99151 7.02667 7.28354 7.32338 7.60266 7.81896 7.96073 8.32609 8.44436 8.70346 9.05100 9.60258 11.07745 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.053139 B = 0.005458 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.797653 B = 5128.455420 C = 5437.973275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.214 3.786 3 H 0.003 0.997 4 C -0.520 4.520 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.278 1.278 12 N -0.656 5.656 13 C 0.064 3.936 14 H 0.102 0.898 15 C -0.206 4.206 16 C -0.155 4.155 17 H 0.108 0.892 18 C 0.109 3.891 19 H 0.064 0.936 20 C -0.146 4.146 21 C -0.156 4.156 22 C 0.041 3.959 23 O -0.358 6.358 24 H 0.009 0.991 25 H 0.079 0.921 26 H 0.030 0.970 27 H 0.261 0.739 28 H 0.333 0.667 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.707 0.172 16.296 16.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.107 3.893 3 H 0.021 0.979 4 C -0.559 4.559 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.204 1.204 12 N -0.286 5.286 13 C -0.049 4.049 14 H 0.120 0.880 15 C -0.245 4.245 16 C -0.175 4.175 17 H 0.126 0.874 18 C 0.051 3.949 19 H 0.081 0.919 20 C -0.184 4.184 21 C -0.193 4.193 22 C -0.036 4.036 23 O -0.277 6.277 24 H 0.028 0.972 25 H 0.098 0.902 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.152 0.848 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.106 0.015 16.051 16.052 hybrid contribution 1.121 0.079 -0.729 1.339 sum 1.015 0.095 15.322 15.356 Atomic orbital electron populations 1.21703 0.97640 0.99370 0.99511 1.19142 0.92797 0.92305 0.85062 0.97936 1.21226 1.31589 1.12552 0.90534 0.92325 1.24909 0.95033 0.94998 0.98996 1.69899 1.36522 1.22831 1.23532 0.86575 0.79019 0.79788 0.82082 1.20205 1.21299 1.20358 1.60404 1.31217 1.31442 1.05521 1.22452 0.97370 0.96549 0.88497 0.87971 1.23517 0.91614 1.02436 1.06934 1.22474 0.98826 0.99342 0.96833 0.87427 1.22482 0.82979 0.96860 0.92599 0.91850 1.22962 0.96969 1.01936 0.96553 1.22944 0.96646 1.00698 0.99056 1.23360 0.97967 0.97853 0.84429 1.89306 1.18802 1.91420 1.28131 0.97208 0.90240 0.95119 0.92880 0.84807 0.88714 0.89486 0.90470 0.90863 0.90827 0.90960 0.89342 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.28 9.19 37.15 0.34 -2.94 16 2 C 0.21 5.65 2.50 -68.87 -0.17 5.48 16 3 H 0.00 0.08 7.73 -51.93 -0.40 -0.32 16 4 C -0.52 -14.61 8.59 -34.44 -0.30 -14.91 16 5 H 0.06 1.61 7.62 -52.48 -0.40 1.21 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.92 11.32 55.43 0.63 -25.29 16 8 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.66 -14.77 6.58 -100.92 -0.66 -15.44 16 13 C 0.06 1.23 5.74 -67.68 -0.39 0.84 16 14 H 0.10 2.13 7.77 -51.93 -0.40 1.73 16 15 C -0.21 -3.14 9.88 -26.73 -0.26 -3.41 16 16 C -0.15 -2.50 5.35 -90.58 -0.48 -2.98 16 17 H 0.11 1.79 7.87 -51.93 -0.41 1.38 16 18 C 0.11 1.55 3.45 -25.96 -0.09 1.46 16 19 H 0.06 0.85 7.97 -51.92 -0.41 0.44 16 20 C -0.15 -1.63 6.63 -25.17 -0.17 -1.79 16 21 C -0.16 -1.54 7.09 -25.16 -0.18 -1.72 16 22 C 0.04 0.49 7.63 37.93 0.29 0.78 16 23 O -0.36 -5.92 11.33 -35.23 -0.40 -6.32 16 24 H 0.01 0.23 8.07 -51.93 -0.42 -0.19 16 25 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.33 7.18 8.01 -39.29 -0.31 6.86 16 29 H 0.09 1.38 8.09 -51.93 -0.42 0.96 16 30 H 0.09 1.18 8.09 -51.93 -0.42 0.76 16 31 H 0.08 0.87 7.69 -51.93 -0.40 0.47 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 293.59 15.07 4.42 4.42 Total: -1.00 -30.02 293.59 -8.52 -38.54 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -5.99 Total: 5.08 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -1.50 Total: -17.53 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: -0.04 Total: -40.73 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.40 Total: -6.32 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.02 -8.52 -38.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308661913.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.122 kcal (2) G-P(sol) polarization free energy of solvation -30.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds