Wall clock time and date at job start Mon Mar 30 2020 03:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47156 * 2 1 4 4 C 1.50694 * 109.47278 * 240.00321 * 2 1 3 5 5 H 1.08007 * 119.99897 * 240.00046 * 4 2 1 6 6 C 1.37874 * 120.00477 * 59.99468 * 4 2 1 7 7 N 1.31514 * 119.99687 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00307 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47471 * 59.99826 * 8 6 4 10 10 H 1.48499 * 109.47122 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47065 * 299.99692 * 8 6 4 12 12 N 1.46901 * 109.47251 * 119.99832 * 2 1 3 13 13 C 1.46899 * 111.00203 * 275.00069 * 12 2 1 14 14 H 1.09007 * 115.55032 * 9.27851 * 13 12 2 15 15 C 1.53000 * 117.50080 * 223.61000 * 13 12 2 16 16 C 1.53002 * 60.02940 * 252.49785 * 15 13 12 17 17 H 1.09000 * 117.49996 * 107.50493 * 16 15 13 18 18 C 1.53002 * 117.49773 * 252.51785 * 16 15 13 19 19 H 1.09008 * 110.32994 * 10.86232 * 18 16 15 20 20 C 1.54476 * 110.37561 * 248.61043 * 18 16 15 21 21 C 1.54506 * 104.06370 * 217.18766 * 20 18 16 22 22 C 1.54478 * 104.06313 * 0.02562 * 21 20 18 23 23 O 1.44424 * 104.80615 * 23.97082 * 22 21 20 24 24 H 1.09005 * 109.46862 * 299.99829 * 1 2 3 25 25 H 1.09002 * 109.47488 * 59.99912 * 1 2 3 26 26 H 1.09004 * 109.47119 * 180.02562 * 1 2 3 27 27 H 0.97002 * 119.99939 * 179.97438 * 7 6 4 28 28 H 1.00896 * 110.99881 * 151.04804 * 12 2 1 29 29 H 1.09002 * 117.49833 * 359.97438 * 15 13 12 30 30 H 1.09002 * 117.49953 * 144.99931 * 15 13 12 31 31 H 1.08992 * 110.51047 * 335.83794 * 20 18 16 32 32 H 1.09000 * 110.51205 * 98.40869 * 20 18 16 33 33 H 1.09001 * 110.50989 * 118.64574 * 21 20 18 34 34 H 1.09000 * 110.51274 * 241.21559 * 21 20 18 35 35 H 1.08992 * 110.37381 * 142.80853 * 22 21 20 36 36 H 1.08998 * 110.37064 * 265.03463 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.8260 -2.5201 -4.0077 10 1 1.8269 -0.4199 -5.2204 11 1 3.8064 -1.1207 -4.0081 12 7 2.0196 -0.6925 1.1995 13 6 2.0825 0.2226 2.3469 14 1 1.6230 1.1994 2.1950 15 6 3.3266 0.1577 3.2351 16 6 1.9929 -0.3909 3.7464 17 1 1.8875 -1.4736 3.8158 18 6 1.2651 0.4136 4.8252 19 1 1.7298 1.3923 4.9459 20 6 1.2725 -0.3542 6.1656 21 6 -0.1133 -0.0527 6.7786 22 6 -0.7944 0.8611 5.7358 23 8 -0.1325 0.5554 4.4890 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7094 1.1618 -3.4844 28 1 2.9173 -1.1204 1.0287 29 1 4.0983 -0.5644 2.9682 30 1 3.6856 1.0916 3.6675 31 1 1.3890 -1.4239 5.9923 32 1 2.0675 0.0156 6.8132 33 1 -0.6820 -0.9735 6.9084 34 1 -0.0050 0.4656 7.7314 35 1 -1.8577 0.6317 5.6671 36 1 -0.6491 1.9092 5.9973 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308661913.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:44 Heat of formation + Delta-G solvation = -47.349092 kcal Electronic energy + Delta-G solvation = -15643.562621 eV Core-core repulsion = 13127.251682 eV Total energy + Delta-G solvation = -2516.310939 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.54619 -38.62883 -36.23774 -33.64969 -32.90178 -30.32147 -28.87827 -27.28037 -24.29936 -23.00492 -22.22428 -21.48758 -21.38677 -18.51301 -17.39459 -17.08268 -16.63208 -16.33978 -15.84723 -15.59625 -14.73760 -14.54954 -14.33921 -13.75803 -13.35366 -12.94670 -12.81837 -12.64880 -12.60214 -12.57091 -12.27902 -12.23233 -12.20599 -12.03978 -11.47356 -11.36451 -11.12631 -10.82751 -10.67632 -10.53184 -8.86245 -8.13547 -6.29023 1.42650 1.45496 1.53113 2.41421 2.64239 3.14279 3.29435 3.37789 3.76895 3.88140 4.01664 4.11935 4.18997 4.25201 4.39437 4.54213 4.60506 4.76040 4.81315 4.85485 4.88932 4.97789 4.99144 5.09872 5.15674 5.20419 5.22818 5.33579 5.47557 5.66807 5.83267 6.03138 6.18388 6.47007 6.75748 6.99166 7.41503 8.92401 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.053139 B = 0.005458 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.797653 B = 5128.455420 C = 5437.973275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.221 3.779 3 H -0.031 1.031 4 C -0.541 4.541 5 H 0.061 0.939 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.968 3.032 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.268 1.268 12 N -0.657 5.657 13 C 0.020 3.980 14 H 0.078 0.922 15 C -0.173 4.173 16 C -0.139 4.139 17 H 0.103 0.897 18 C 0.101 3.899 19 H 0.071 0.929 20 C -0.141 4.141 21 C -0.148 4.148 22 C 0.031 3.969 23 O -0.402 6.402 24 H 0.013 0.987 25 H 0.058 0.942 26 H 0.024 0.976 27 H 0.263 0.737 28 H 0.335 0.665 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.754 -0.535 17.745 17.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.112 3.888 3 H -0.013 1.013 4 C -0.580 4.580 5 H 0.080 0.920 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.793 3.207 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.193 1.193 12 N -0.287 5.287 13 C -0.092 4.092 14 H 0.096 0.904 15 C -0.212 4.212 16 C -0.158 4.158 17 H 0.121 0.879 18 C 0.044 3.956 19 H 0.089 0.911 20 C -0.179 4.179 21 C -0.186 4.186 22 C -0.045 4.045 23 O -0.322 6.322 24 H 0.032 0.968 25 H 0.077 0.923 26 H 0.043 0.957 27 H 0.072 0.928 28 H 0.154 0.846 29 H 0.125 0.875 30 H 0.128 0.872 31 H 0.092 0.908 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.947 -0.693 17.537 17.576 hybrid contribution 0.765 0.352 -1.118 1.400 sum 1.711 -0.341 16.419 16.512 Atomic orbital electron populations 1.21512 0.98060 0.98545 0.98636 1.18892 0.92445 0.90753 0.86661 1.01308 1.21551 1.32008 1.12873 0.91527 0.92042 1.25790 0.95046 0.95656 1.02203 1.70036 1.37353 1.24099 1.24332 0.85466 0.78797 0.78540 0.77934 1.19638 1.20841 1.19311 1.60332 1.31558 1.31946 1.04848 1.22369 1.01995 0.95769 0.89045 0.90443 1.23567 0.90688 1.03513 1.03407 1.22537 0.99345 0.99308 0.94648 0.87894 1.22640 0.82098 0.97461 0.93387 0.91070 1.22949 0.98540 1.01342 0.95054 1.22937 0.95560 1.00698 0.99392 1.23618 0.98242 0.99165 0.83507 1.89259 1.20119 1.91837 1.31030 0.96750 0.92314 0.95669 0.92754 0.84567 0.87487 0.87200 0.90776 0.88438 0.90472 0.88277 0.88850 0.91476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.98 9.19 71.98 0.66 -5.32 16 2 C 0.22 12.05 2.50 44.17 0.11 12.16 16 3 H -0.03 -1.84 7.73 -2.39 -0.02 -1.86 16 4 C -0.54 -30.85 8.59 25.60 0.22 -30.63 16 5 H 0.06 3.38 7.62 -2.91 -0.02 3.36 16 6 C 0.01 0.70 5.30 84.65 0.45 1.15 16 7 N -0.92 -54.63 11.32 21.45 0.24 -54.38 16 8 Si 0.97 44.23 29.54 68.60 2.03 46.25 16 9 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 12 N -0.66 -30.16 6.58 -473.20 -3.11 -33.27 16 13 C 0.02 0.77 5.74 44.94 0.26 1.03 16 14 H 0.08 3.39 7.77 -2.38 -0.02 3.38 16 15 C -0.17 -4.97 9.88 30.60 0.30 -4.67 16 16 C -0.14 -4.33 5.35 -10.77 -0.06 -4.39 16 17 H 0.10 3.31 7.87 -2.39 -0.02 3.29 16 18 C 0.10 2.74 3.45 31.10 0.11 2.85 16 19 H 0.07 1.78 7.97 -2.38 -0.02 1.76 16 20 C -0.14 -2.74 6.63 31.61 0.21 -2.53 16 21 C -0.15 -2.52 7.09 31.61 0.22 -2.29 16 22 C 0.03 0.69 7.63 72.48 0.55 1.24 16 23 O -0.40 -13.21 11.33 -148.98 -1.69 -14.89 16 24 H 0.01 0.71 8.07 -2.38 -0.02 0.70 16 25 H 0.06 3.44 6.07 -2.39 -0.01 3.43 16 26 H 0.02 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 28 H 0.34 14.58 8.01 -89.70 -0.72 13.86 16 29 H 0.11 2.84 8.09 -2.39 -0.02 2.82 16 30 H 0.11 2.67 8.09 -2.39 -0.02 2.65 16 31 H 0.07 1.49 7.69 -2.39 -0.02 1.47 16 32 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -65.75 293.59 0.83 -64.92 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: 0.33 Total: 22.78 kcal Atomic # 6 Polarization: -34.44 SS G_CDS: 3.04 Total: -31.40 kcal Atomic # 7 Polarization: -84.78 SS G_CDS: -2.87 Total: -87.65 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -1.69 Total: -14.89 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -65.75 0.83 -64.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308661913.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.570 kcal (2) G-P(sol) polarization free energy of solvation -65.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds