Wall clock time and date at job start Mon Mar 30 2020 03:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 H 1.07998 * 120.00129 * 240.00616 * 4 2 1 6 6 C 1.37880 * 119.99861 * 59.99898 * 4 2 1 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47294 * 60.00559 * 8 6 4 10 10 H 1.48503 * 109.46954 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47431 * 300.00157 * 8 6 4 12 12 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 13 13 C 1.46900 * 110.99890 * 274.99873 * 12 2 1 14 14 H 1.08999 * 115.54989 * 9.33233 * 13 12 2 15 15 C 1.53002 * 117.50389 * 223.62319 * 13 12 2 16 16 C 1.52997 * 59.99936 * 252.50903 * 15 13 12 17 17 H 1.09002 * 117.51740 * 252.51139 * 16 15 13 18 18 C 1.53008 * 117.50090 * 107.48770 * 16 15 13 19 19 H 1.08998 * 109.86393 * 350.36956 * 18 16 15 20 20 C 1.54092 * 109.87763 * 111.37410 * 18 16 15 21 21 C 1.54810 * 104.18541 * 121.45889 * 20 18 16 22 22 C 1.54995 * 102.09399 * 20.87601 * 21 20 18 23 23 O 1.43745 * 109.87812 * 229.21147 * 18 16 15 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 28 28 H 1.00901 * 111.00276 * 151.05158 * 12 2 1 29 29 H 1.09000 * 117.49201 * 359.97438 * 15 13 12 30 30 H 1.08994 * 117.50258 * 145.01944 * 15 13 12 31 31 H 1.08998 * 110.48692 * 240.12897 * 20 18 16 32 32 H 1.08992 * 110.49410 * 2.64589 * 20 18 16 33 33 H 1.09005 * 110.91053 * 139.07646 * 21 20 18 34 34 H 1.09002 * 110.90585 * 262.67851 * 21 20 18 35 35 H 1.08999 * 110.61503 * 81.48205 * 22 21 20 36 36 H 1.09003 * 110.61989 * 204.31964 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0077 10 1 1.8271 -0.4199 -5.2204 11 1 3.8066 -1.1210 -4.0081 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2225 2.3469 14 1 1.6222 1.1989 2.1953 15 6 3.3266 0.1578 3.2350 16 6 1.9928 -0.3910 3.7456 17 1 1.4737 0.1817 4.5142 18 6 1.8447 -1.9108 3.8422 19 1 2.6915 -2.3970 3.3578 20 6 1.7714 -2.3372 5.3211 21 6 0.4121 -3.0687 5.4381 22 6 0.1231 -3.4546 3.9651 23 8 0.6176 -2.3230 3.2172 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.7096 1.1617 -3.4844 28 1 2.9173 -1.1205 1.0288 29 1 4.0984 -0.5642 2.9681 30 1 3.6853 1.0917 3.6677 31 1 2.5908 -3.0136 5.5642 32 1 1.7938 -1.4631 5.9718 33 1 0.5011 -3.9575 6.0628 34 1 -0.3577 -2.3999 5.8232 35 1 0.6641 -4.3609 3.6926 36 1 -0.9472 -3.5853 3.8053 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308661915.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:48 Heat of formation + Delta-G solvation = -23.523299 kcal Electronic energy + Delta-G solvation = -15976.946069 eV Core-core repulsion = 13461.668294 eV Total energy + Delta-G solvation = -2515.277775 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.28859 -37.02819 -34.27303 -31.82911 -31.44241 -28.77725 -27.23620 -25.06393 -22.97842 -21.74918 -20.91550 -20.23452 -19.18299 -16.53386 -16.03834 -15.66748 -14.97062 -14.73811 -14.15824 -13.81469 -13.40874 -13.25706 -12.41318 -12.25970 -11.65882 -11.53796 -11.28053 -11.09171 -11.04099 -10.87273 -10.72907 -10.58505 -10.50825 -10.16537 -10.03414 -9.71531 -9.47964 -9.17870 -8.73408 -8.37739 -6.97484 -5.96179 -4.02092 3.34927 3.39051 3.42129 3.97800 4.44892 4.63689 4.74158 4.84133 5.07048 5.13008 5.24564 5.35523 5.45148 5.50515 5.68992 5.76032 5.82457 5.84993 5.97600 6.03236 6.10958 6.12960 6.31948 6.45980 6.59413 7.01982 7.30918 7.37522 7.43608 7.64918 7.85231 8.00539 8.36737 8.50750 8.76172 9.08997 9.63145 11.10148 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.037453 B = 0.006594 C = 0.006245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.417444 B = 4245.497529 C = 4482.300761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.215 3.785 3 H 0.000 1.000 4 C -0.517 4.517 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.642 5.642 13 C 0.062 3.938 14 H 0.100 0.900 15 C -0.209 4.209 16 C -0.162 4.162 17 H 0.097 0.903 18 C 0.125 3.875 19 H 0.062 0.938 20 C -0.152 4.152 21 C -0.155 4.155 22 C 0.040 3.960 23 O -0.334 6.334 24 H 0.077 0.923 25 H 0.032 0.968 26 H 0.004 0.996 27 H 0.261 0.739 28 H 0.329 0.671 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.461 -4.772 14.243 15.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.107 3.893 3 H 0.018 0.982 4 C -0.555 4.555 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.204 1.204 12 N -0.271 5.271 13 C -0.050 4.050 14 H 0.117 0.883 15 C -0.248 4.248 16 C -0.182 4.182 17 H 0.115 0.885 18 C 0.067 3.933 19 H 0.080 0.920 20 C -0.190 4.190 21 C -0.193 4.193 22 C -0.038 4.038 23 O -0.252 6.252 24 H 0.095 0.905 25 H 0.051 0.949 26 H 0.023 0.977 27 H 0.070 0.930 28 H 0.148 0.852 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.651 -4.806 14.023 14.838 hybrid contribution 1.167 -0.027 -0.737 1.380 sum 1.818 -4.833 13.286 14.254 Atomic orbital electron populations 1.21660 0.97679 0.99462 0.98998 1.19130 0.92777 0.92107 0.85248 0.98204 1.21227 1.31358 1.12407 0.90539 0.92390 1.24903 0.95099 0.95017 0.98956 1.69897 1.36686 1.22902 1.23442 0.86596 0.78994 0.79813 0.82169 1.20235 1.21338 1.20408 1.60393 1.30821 1.30840 1.05005 1.22452 0.97399 0.96208 0.88946 0.88250 1.23503 0.91679 1.02369 1.07226 1.22636 1.00755 0.94569 1.00230 0.88486 1.21912 0.88452 0.92715 0.90207 0.92020 1.23050 0.97421 1.00619 0.97889 1.23135 0.97585 1.00405 0.98170 1.23495 0.99884 0.90782 0.89592 1.89214 1.38032 1.46149 1.51840 0.90472 0.94889 0.97697 0.92952 0.85165 0.89093 0.89356 0.91307 0.90756 0.90994 0.90887 0.92885 0.89573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.15 9.19 37.16 0.34 -2.81 16 2 C 0.21 5.63 2.50 -68.86 -0.17 5.46 16 3 H 0.00 0.01 7.73 -51.93 -0.40 -0.39 16 4 C -0.52 -14.55 8.59 -34.44 -0.30 -14.84 16 5 H 0.06 1.61 7.62 -52.49 -0.40 1.21 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.99 11.32 55.43 0.63 -25.37 16 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.64 -14.32 5.62 -100.95 -0.57 -14.89 16 13 C 0.06 1.19 5.96 -67.71 -0.40 0.79 16 14 H 0.10 1.98 7.77 -51.93 -0.40 1.58 16 15 C -0.21 -3.18 9.88 -26.73 -0.26 -3.45 16 16 C -0.16 -2.58 5.27 -90.62 -0.48 -3.06 16 17 H 0.10 1.43 7.91 -51.93 -0.41 1.02 16 18 C 0.13 1.94 3.14 -26.16 -0.08 1.86 16 19 H 0.06 0.99 7.93 -51.93 -0.41 0.58 16 20 C -0.15 -1.80 6.64 -25.21 -0.17 -1.97 16 21 C -0.16 -1.72 7.15 -24.72 -0.18 -1.90 16 22 C 0.04 0.54 7.72 38.21 0.29 0.84 16 23 O -0.33 -6.07 10.76 -35.23 -0.38 -6.45 16 24 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 25 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.00 0.10 8.07 -51.93 -0.42 -0.32 16 27 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.33 7.20 8.01 -39.29 -0.31 6.89 16 29 H 0.09 1.35 8.01 -51.93 -0.42 0.93 16 30 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.82 7.55 -51.93 -0.39 0.43 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 291.88 15.07 4.40 4.40 Total: -1.00 -29.92 291.88 -8.42 -38.33 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -5.98 Total: 4.72 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -1.50 Total: -17.42 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.06 Total: -40.25 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.38 Total: -6.45 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.92 -8.42 -38.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308661915.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.811 kcal (2) G-P(sol) polarization free energy of solvation -29.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds