Wall clock time and date at job start Mon Mar 30 2020 03:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 H 1.07998 * 120.00129 * 240.00616 * 4 2 1 6 6 C 1.37880 * 119.99861 * 59.99898 * 4 2 1 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47294 * 60.00559 * 8 6 4 10 10 H 1.48503 * 109.46954 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47431 * 300.00157 * 8 6 4 12 12 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 13 13 C 1.46900 * 110.99890 * 274.99873 * 12 2 1 14 14 H 1.08999 * 115.54989 * 9.33233 * 13 12 2 15 15 C 1.53002 * 117.50389 * 223.62319 * 13 12 2 16 16 C 1.52997 * 59.99936 * 252.50903 * 15 13 12 17 17 H 1.09002 * 117.51740 * 252.51139 * 16 15 13 18 18 C 1.53008 * 117.50090 * 107.48770 * 16 15 13 19 19 H 1.08998 * 109.86393 * 350.36956 * 18 16 15 20 20 C 1.54092 * 109.87763 * 111.37410 * 18 16 15 21 21 C 1.54810 * 104.18541 * 121.45889 * 20 18 16 22 22 C 1.54995 * 102.09399 * 20.87601 * 21 20 18 23 23 O 1.43745 * 109.87812 * 229.21147 * 18 16 15 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 28 28 H 1.00901 * 111.00276 * 151.05158 * 12 2 1 29 29 H 1.09000 * 117.49201 * 359.97438 * 15 13 12 30 30 H 1.08994 * 117.50258 * 145.01944 * 15 13 12 31 31 H 1.08998 * 110.48692 * 240.12897 * 20 18 16 32 32 H 1.08992 * 110.49410 * 2.64589 * 20 18 16 33 33 H 1.09005 * 110.91053 * 139.07646 * 21 20 18 34 34 H 1.09002 * 110.90585 * 262.67851 * 21 20 18 35 35 H 1.08999 * 110.61503 * 81.48205 * 22 21 20 36 36 H 1.09003 * 110.61989 * 204.31964 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0077 10 1 1.8271 -0.4199 -5.2204 11 1 3.8066 -1.1210 -4.0081 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2225 2.3469 14 1 1.6222 1.1989 2.1953 15 6 3.3266 0.1578 3.2350 16 6 1.9928 -0.3910 3.7456 17 1 1.4737 0.1817 4.5142 18 6 1.8447 -1.9108 3.8422 19 1 2.6915 -2.3970 3.3578 20 6 1.7714 -2.3372 5.3211 21 6 0.4121 -3.0687 5.4381 22 6 0.1231 -3.4546 3.9651 23 8 0.6176 -2.3230 3.2172 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.7096 1.1617 -3.4844 28 1 2.9173 -1.1205 1.0288 29 1 4.0984 -0.5642 2.9681 30 1 3.6853 1.0917 3.6677 31 1 2.5908 -3.0136 5.5642 32 1 1.7938 -1.4631 5.9718 33 1 0.5011 -3.9575 6.0628 34 1 -0.3577 -2.3999 5.8232 35 1 0.6641 -4.3609 3.6926 36 1 -0.9472 -3.5853 3.8053 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308661915.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:47 Heat of formation + Delta-G solvation = -42.865155 kcal Electronic energy + Delta-G solvation = -15977.784794 eV Core-core repulsion = 13461.668294 eV Total energy + Delta-G solvation = -2516.116501 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.47863 -38.49485 -36.17583 -33.56315 -32.76262 -30.05808 -29.03126 -27.25530 -24.09458 -23.01610 -22.26238 -21.87178 -20.69212 -18.50715 -17.32981 -16.92339 -16.70758 -16.09837 -15.68728 -15.34230 -15.06636 -14.39058 -14.30697 -13.71880 -13.31438 -12.83882 -12.82854 -12.63740 -12.55986 -12.45775 -12.24487 -12.14591 -12.10602 -11.97328 -11.52268 -11.27027 -11.02798 -10.79997 -10.51277 -10.38161 -8.70794 -8.12278 -6.26605 1.41708 1.44529 1.52049 2.41866 2.74282 3.15618 3.44987 3.54904 3.75175 3.80484 4.08258 4.14378 4.22730 4.41967 4.51393 4.57767 4.68285 4.82551 4.86858 4.91297 4.95625 4.99619 5.02624 5.13549 5.18246 5.25847 5.31464 5.38864 5.51385 5.69558 5.87843 6.22450 6.32403 6.52935 6.82685 7.03502 7.43561 8.93521 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.037453 B = 0.006594 C = 0.006245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.417444 B = 4245.497529 C = 4482.300761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.222 3.778 3 H -0.032 1.032 4 C -0.538 4.538 5 H 0.057 0.943 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.965 3.035 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.269 1.269 12 N -0.640 5.640 13 C 0.017 3.983 14 H 0.082 0.918 15 C -0.179 4.179 16 C -0.145 4.145 17 H 0.113 0.887 18 C 0.117 3.883 19 H 0.050 0.950 20 C -0.144 4.144 21 C -0.145 4.145 22 C 0.029 3.971 23 O -0.379 6.379 24 H 0.055 0.945 25 H 0.021 0.979 26 H 0.014 0.986 27 H 0.263 0.737 28 H 0.328 0.672 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.367 -5.781 15.709 16.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.113 3.887 3 H -0.014 1.014 4 C -0.576 4.576 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.790 3.210 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.194 1.194 12 N -0.268 5.268 13 C -0.095 4.095 14 H 0.100 0.900 15 C -0.218 4.218 16 C -0.165 4.165 17 H 0.131 0.869 18 C 0.059 3.941 19 H 0.068 0.932 20 C -0.182 4.182 21 C -0.183 4.183 22 C -0.048 4.048 23 O -0.298 6.298 24 H 0.074 0.926 25 H 0.040 0.960 26 H 0.033 0.967 27 H 0.072 0.928 28 H 0.146 0.854 29 H 0.116 0.884 30 H 0.130 0.870 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.117 0.883 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.563 -5.819 15.524 16.652 hybrid contribution 0.866 0.306 -1.146 1.469 sum 2.429 -5.513 14.378 15.589 Atomic orbital electron populations 1.21451 0.98027 0.98349 0.98358 1.18883 0.92452 0.90580 0.86769 1.01401 1.21545 1.31745 1.12643 0.91688 0.92446 1.25755 0.95147 0.95691 1.02078 1.70028 1.37461 1.24096 1.24222 0.85517 0.78778 0.78547 0.78183 1.19811 1.20764 1.19397 1.60302 1.30877 1.31364 1.04287 1.22441 1.01859 0.95723 0.89462 0.89958 1.23534 0.90789 1.03375 1.04054 1.22768 1.00846 0.95283 0.97599 0.86917 1.22041 0.87388 0.92051 0.92578 0.93221 1.23014 0.98471 1.01581 0.95116 1.23101 0.97134 1.01456 0.96569 1.23719 1.00109 0.89846 0.91103 1.89161 1.39068 1.47779 1.53800 0.92595 0.95976 0.96703 0.92819 0.85365 0.88422 0.86966 0.89518 0.89509 0.88301 0.90650 0.92373 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.63 9.19 71.98 0.66 -4.97 16 2 C 0.22 12.03 2.50 44.17 0.11 12.14 16 3 H -0.03 -1.87 7.73 -2.39 -0.02 -1.89 16 4 C -0.54 -30.88 8.59 25.60 0.22 -30.66 16 5 H 0.06 3.22 7.62 -2.91 -0.02 3.20 16 6 C 0.01 0.70 5.30 84.66 0.45 1.15 16 7 N -0.92 -54.68 11.32 21.45 0.24 -54.44 16 8 Si 0.96 44.65 29.54 68.60 2.03 46.67 16 9 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 N -0.64 -29.17 5.62 -473.30 -2.66 -31.83 16 13 C 0.02 0.64 5.96 44.92 0.27 0.91 16 14 H 0.08 3.39 7.77 -2.39 -0.02 3.37 16 15 C -0.18 -5.11 9.88 30.59 0.30 -4.81 16 16 C -0.15 -4.39 5.27 -10.79 -0.06 -4.45 16 17 H 0.11 3.04 7.91 -2.39 -0.02 3.02 16 18 C 0.12 3.46 3.14 30.97 0.10 3.55 16 19 H 0.05 1.55 7.93 -2.39 -0.02 1.53 16 20 C -0.14 -2.95 6.64 31.58 0.21 -2.74 16 21 C -0.15 -2.78 7.15 31.89 0.23 -2.55 16 22 C 0.03 0.75 7.72 72.66 0.56 1.31 16 23 O -0.38 -13.61 10.76 -148.98 -1.60 -15.21 16 24 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 25 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.01 0.72 8.07 -2.39 -0.02 0.70 16 27 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 28 H 0.33 14.61 8.01 -89.69 -0.72 13.90 16 29 H 0.10 2.69 8.01 -2.39 -0.02 2.67 16 30 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.09 1.58 7.55 -2.39 -0.02 1.56 16 33 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -65.34 291.88 1.39 -63.96 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.33 Total: 21.96 kcal Atomic # 6 Polarization: -34.17 SS G_CDS: 3.05 Total: -31.12 kcal Atomic # 7 Polarization: -83.85 SS G_CDS: -2.42 Total: -86.27 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -1.60 Total: -15.21 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -65.34 1.39 -63.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308661915.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.093 kcal (2) G-P(sol) polarization free energy of solvation -65.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds