Wall clock time and date at job start Mon Mar 30 2020 03:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46506 * 109.47169 * 2 1 4 4 C 1.34774 * 120.00167 * 270.00660 * 3 2 1 5 5 O 1.21682 * 120.00310 * 179.97438 * 4 3 2 6 6 C 1.46377 * 119.99938 * 359.97438 * 4 3 2 7 7 H 1.08003 * 120.00048 * 0.02562 * 6 4 3 8 8 C 1.40053 * 120.00079 * 180.02562 * 6 4 3 9 9 N 1.30668 * 119.99675 * 0.02562 * 8 6 4 10 10 Si 1.86791 * 119.99926 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47569 * 90.00337 * 10 8 6 12 12 H 1.48503 * 109.47165 * 210.00071 * 10 8 6 13 13 H 1.48500 * 109.47510 * 329.99807 * 10 8 6 14 14 C 1.46499 * 119.99561 * 89.99887 * 3 2 1 15 15 H 1.09008 * 109.46597 * 180.02562 * 14 3 2 16 16 C 1.52999 * 109.47218 * 60.00544 * 14 3 2 17 17 C 1.53000 * 109.47458 * 300.00060 * 14 3 2 18 18 C 1.53781 * 113.61576 * 294.49527 * 17 14 3 19 19 C 1.53782 * 87.07909 * 220.02030 * 18 17 14 20 20 C 1.53774 * 87.17505 * 25.39092 * 19 18 17 21 21 H 1.08999 * 109.47242 * 299.99645 * 1 2 3 22 22 H 1.09003 * 109.47680 * 59.99970 * 1 2 3 23 23 H 1.09008 * 109.47397 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47242 * 240.00355 * 2 1 3 25 25 H 1.09003 * 109.47680 * 120.00030 * 2 1 3 26 26 H 0.96999 * 119.99745 * 179.97438 * 9 8 6 27 27 H 1.08996 * 109.47140 * 304.79764 * 16 14 3 28 28 H 1.09001 * 109.47254 * 64.80075 * 16 14 3 29 29 H 1.08998 * 109.47280 * 184.79923 * 16 14 3 30 30 H 1.08993 * 112.84508 * 65.68960 * 17 14 3 31 31 H 1.08998 * 113.61603 * 105.46453 * 18 17 14 32 32 H 1.09006 * 113.61217 * 334.56130 * 18 17 14 33 33 H 1.08996 * 113.61415 * 139.98411 * 19 18 17 34 34 H 1.09001 * 113.60834 * 270.79603 * 19 18 17 35 35 H 1.08994 * 113.61896 * 89.16296 * 20 19 18 36 36 H 1.09007 * 113.61389 * 220.06592 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2428 2.0167 -1.1672 5 8 2.6480 3.1641 -1.1672 6 6 1.9992 1.3265 -2.4348 7 1 1.6392 0.3083 -2.4349 8 6 2.2330 1.9866 -3.6477 9 7 2.6691 3.2184 -3.6476 10 14 1.9215 1.1061 -5.2654 11 1 0.5192 1.3400 -5.6943 12 1 2.8494 1.6290 -6.3003 13 1 2.1484 -0.3507 -5.0878 14 6 2.2624 2.0718 1.2688 15 1 2.6192 3.0824 1.0696 16 6 3.3170 1.3069 2.0710 17 6 0.9614 2.1397 2.0711 18 6 -0.1252 3.0045 1.4107 19 6 -0.4596 3.5213 2.8199 20 6 0.9890 3.1793 3.2063 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 2.8314 3.6754 -4.4877 27 1 2.9980 0.2723 2.1969 28 1 4.2676 1.3318 1.5381 29 1 3.4369 1.7718 3.0496 30 1 0.6068 1.1584 2.3861 31 1 -0.9285 2.4247 0.9561 32 1 0.2717 3.7727 0.7468 33 1 -0.6800 4.5882 2.8529 34 1 -1.2042 2.9190 3.3405 35 1 1.6910 3.9951 3.0344 36 1 1.0839 2.7401 4.1995 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000325473579.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:11 Heat of formation + Delta-G solvation = -46.994409 kcal Electronic energy + Delta-G solvation = -16583.183701 eV Core-core repulsion = 14066.888142 eV Total energy + Delta-G solvation = -2516.295559 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.73201 -38.78570 -36.19382 -34.63047 -32.82824 -30.21203 -28.21680 -26.74833 -26.17550 -23.84548 -22.99470 -20.57438 -20.16706 -18.33579 -17.75576 -16.83465 -16.23054 -16.04480 -15.46374 -14.99024 -14.40669 -14.32828 -13.81567 -13.55350 -13.38379 -13.27778 -13.15391 -12.98632 -12.75475 -12.70683 -12.43763 -12.28879 -11.98078 -11.67792 -11.51753 -11.31523 -11.12995 -11.01590 -10.89859 -9.68955 -8.93910 -8.24788 -6.78221 1.37779 1.39332 1.53874 2.24001 2.50800 2.89324 3.66387 3.77962 3.86627 3.89178 4.08906 4.30628 4.39067 4.47869 4.55340 4.71105 4.75284 4.83668 4.89127 4.91724 4.95615 5.03429 5.08263 5.11454 5.20090 5.26166 5.34649 5.38589 5.43271 5.57877 5.73012 5.90821 6.22424 6.58746 6.92071 7.53790 8.54992 8.74081 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.034472 B = 0.008479 C = 0.008261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.053027 B = 3301.410378 C = 3388.676643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.119 3.881 3 N -0.632 5.632 4 C 0.544 3.456 5 O -0.636 6.636 6 C -0.565 4.565 7 H 0.089 0.911 8 C 0.027 3.973 9 N -0.824 5.824 10 Si 0.990 3.010 11 H -0.263 1.263 12 H -0.275 1.275 13 H -0.247 1.247 14 C 0.145 3.855 15 H 0.042 0.958 16 C -0.147 4.147 17 C -0.107 4.107 18 C -0.138 4.138 19 C -0.129 4.129 20 C -0.125 4.125 21 H 0.064 0.936 22 H 0.029 0.971 23 H 0.079 0.921 24 H 0.062 0.938 25 H 0.084 0.916 26 H 0.271 0.729 27 H 0.073 0.927 28 H 0.030 0.970 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.059 0.941 32 H 0.033 0.967 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.064 0.936 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.400 -7.221 10.908 14.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.004 4.004 3 N -0.367 5.367 4 C 0.349 3.651 5 O -0.524 6.524 6 C -0.601 4.601 7 H 0.107 0.893 8 C -0.187 4.187 9 N -0.454 5.454 10 Si 0.810 3.190 11 H -0.188 1.188 12 H -0.200 1.200 13 H -0.171 1.171 14 C 0.041 3.959 15 H 0.061 0.939 16 C -0.205 4.205 17 C -0.126 4.126 18 C -0.176 4.176 19 C -0.166 4.166 20 C -0.163 4.163 21 H 0.083 0.917 22 H 0.048 0.952 23 H 0.098 0.902 24 H 0.080 0.920 25 H 0.102 0.898 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.049 0.951 29 H 0.099 0.901 30 H 0.126 0.874 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.120 0.880 35 H 0.083 0.917 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.114 -6.467 10.834 13.614 hybrid contribution 0.133 0.229 -1.211 1.240 sum -4.981 -6.238 9.623 12.503 Atomic orbital electron populations 1.22280 0.96332 1.02047 1.01466 1.21311 0.94371 0.82865 1.01893 1.47845 1.70016 1.14279 1.04515 1.18558 0.76842 0.85266 0.84396 1.90527 1.53221 1.21049 1.87606 1.21500 1.47439 1.01219 0.89961 0.89269 1.26964 0.91880 0.95017 1.04865 1.70214 1.34120 1.12586 1.28528 0.85133 0.78770 0.79516 0.75613 1.18821 1.19979 1.17054 1.20780 0.95086 0.95921 0.84095 0.93924 1.22025 0.97373 1.01261 0.99799 1.22954 0.94387 0.99059 0.96201 1.22787 0.98811 0.99100 0.96885 1.22808 0.97384 1.01246 0.95140 1.22871 0.96783 0.98120 0.98519 0.91700 0.95166 0.90236 0.92003 0.89828 0.91931 0.90841 0.95063 0.90074 0.87415 0.92234 0.94774 0.91752 0.88020 0.91683 0.88829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.15 9.82 71.98 0.71 -4.44 16 2 C 0.12 4.25 5.37 86.38 0.46 4.72 16 3 N -0.63 -28.70 2.27 -802.89 -1.82 -30.52 16 4 C 0.54 32.12 7.61 86.36 0.66 32.77 16 5 O -0.64 -43.80 14.35 -4.29 -0.06 -43.86 16 6 C -0.56 -32.43 8.74 24.83 0.22 -32.21 16 7 H 0.09 4.62 6.00 -2.91 -0.02 4.60 16 8 C 0.03 1.55 5.50 85.31 0.47 2.02 16 9 N -0.82 -51.87 11.83 21.84 0.26 -51.61 16 10 Si 0.99 42.02 29.56 68.60 2.03 44.05 16 11 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 12 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 13 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 14 C 0.15 5.72 2.35 44.99 0.11 5.83 16 15 H 0.04 2.09 6.82 -2.38 -0.02 2.07 16 16 C -0.15 -4.58 9.24 71.98 0.66 -3.92 16 17 C -0.11 -3.29 1.95 -10.21 -0.02 -3.31 16 18 C -0.14 -4.77 7.10 31.12 0.22 -4.55 16 19 C -0.13 -3.24 8.08 31.12 0.25 -2.99 16 20 C -0.13 -3.19 7.41 31.18 0.23 -2.96 16 21 H 0.06 1.89 4.24 -2.39 -0.01 1.88 16 22 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 24 H 0.06 2.39 6.09 -2.39 -0.01 2.37 16 25 H 0.08 2.41 6.34 -2.39 -0.02 2.39 16 26 H 0.27 15.52 8.29 -92.71 -0.77 14.75 16 27 H 0.07 1.95 6.48 -2.39 -0.02 1.94 16 28 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.08 2.07 7.93 -2.39 -0.02 2.05 16 30 H 0.11 2.83 6.82 -2.39 -0.02 2.81 16 31 H 0.06 2.03 6.97 -2.39 -0.02 2.01 16 32 H 0.03 1.50 8.10 -2.38 -0.02 1.48 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.06 1.85 8.05 -2.39 -0.02 1.83 16 36 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 Total: -1.00 -76.30 283.46 5.42 -70.88 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 1.06 Total: 20.10 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 3.97 Total: -9.04 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -1.57 Total: -82.14 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -0.06 Total: -43.86 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -76.30 5.42 -70.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325473579.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.886 kcal (2) G-P(sol) polarization free energy of solvation -76.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds