Wall clock time and date at job start Mon Mar 30 2020 03:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46492 * 109.47232 * 2 1 4 4 C 1.34778 * 120.00411 * 83.99591 * 3 2 1 5 5 O 1.21687 * 120.00245 * 179.97438 * 4 3 2 6 6 C 1.46378 * 119.99535 * 0.02562 * 4 3 2 7 7 H 1.07996 * 120.00175 * 353.16540 * 6 4 3 8 8 C 1.40050 * 119.99609 * 173.45426 * 6 4 3 9 9 N 1.30665 * 120.00195 * 5.47720 * 8 6 4 10 10 Si 1.86804 * 119.99495 * 185.48775 * 8 6 4 11 11 H 1.48496 * 109.47259 * 94.99114 * 10 8 6 12 12 H 1.48501 * 109.46539 * 214.98617 * 10 8 6 13 13 H 1.48503 * 109.47111 * 334.98490 * 10 8 6 14 14 C 1.46505 * 119.99792 * 263.99770 * 3 2 1 15 15 H 1.09003 * 109.46924 * 181.78850 * 14 3 2 16 16 C 1.52993 * 109.47070 * 301.78735 * 14 3 2 17 17 C 1.53000 * 109.47084 * 61.79010 * 14 3 2 18 18 C 1.53781 * 113.61302 * 162.85063 * 17 14 3 19 19 C 1.53950 * 87.01932 * 220.04910 * 18 17 14 20 20 C 1.53782 * 113.61286 * 65.24370 * 17 14 3 21 21 H 1.09000 * 109.47254 * 186.21349 * 1 2 3 22 22 H 1.08999 * 109.46830 * 306.21535 * 1 2 3 23 23 H 1.09002 * 109.46588 * 66.21246 * 1 2 3 24 24 H 1.09000 * 109.46806 * 239.99482 * 2 1 3 25 25 H 1.09003 * 109.46879 * 119.99897 * 2 1 3 26 26 H 0.97006 * 120.00154 * 180.02562 * 9 8 6 27 27 H 1.08997 * 109.47379 * 305.51526 * 16 14 3 28 28 H 1.09005 * 109.47444 * 65.52000 * 16 14 3 29 29 H 1.09005 * 109.47105 * 185.51613 * 16 14 3 30 30 H 1.09000 * 112.84731 * 294.04606 * 17 14 3 31 31 H 1.09001 * 113.61774 * 334.56557 * 18 17 14 32 32 H 1.08998 * 113.61844 * 105.47030 * 18 17 14 33 33 H 1.09002 * 113.53473 * 270.80954 * 19 18 17 34 34 H 1.09000 * 113.74935 * 139.94706 * 19 18 17 35 35 H 1.09003 * 113.61334 * 254.52252 * 20 17 14 36 36 H 1.08996 * 113.61945 * 25.43131 * 20 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1280 2.0573 1.1608 5 8 2.5341 3.2044 1.1608 6 6 1.7595 1.4112 2.4215 7 1 1.2971 0.4353 2.4133 8 6 2.0011 2.0614 3.6382 9 7 2.4557 3.2864 3.6454 10 14 1.6737 1.1771 5.2508 11 1 2.9312 0.5563 5.7391 12 1 1.1789 2.1504 6.2573 13 1 0.6508 0.1218 5.0378 14 6 2.3877 2.0275 -1.2618 15 1 2.7552 3.0338 -1.0607 16 6 3.4839 1.2124 -1.9507 17 6 1.1611 2.1053 -2.1731 18 6 1.3123 3.1129 -3.3249 19 6 -0.1561 3.5001 -3.0720 20 6 0.0451 3.0119 -1.6277 21 1 -0.3634 -1.0216 0.1112 22 1 -0.3633 0.6072 0.8291 23 1 -0.3632 0.4145 -0.9404 24 1 1.8933 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 2.6234 3.7366 4.4881 27 1 4.3192 1.0738 -1.2644 28 1 3.0860 0.2396 -2.2399 29 1 3.8275 1.7429 -2.8387 30 1 0.8094 1.1247 -2.4940 31 1 2.0183 3.9158 -3.1128 32 1 1.4806 2.6452 -4.2950 33 1 -0.8681 2.9015 -3.6402 34 1 -0.3472 4.5705 -3.1485 35 1 -0.8082 2.4628 -1.2297 36 1 0.4039 3.7872 -0.9508 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000325473580.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:13 Heat of formation + Delta-G solvation = -28.920606 kcal Electronic energy + Delta-G solvation = -16575.453226 eV Core-core repulsion = 14059.941406 eV Total energy + Delta-G solvation = -2515.511820 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.17553 -37.03584 -34.33145 -32.50257 -31.35145 -28.44799 -26.20840 -25.32596 -24.92036 -22.33712 -21.28574 -19.06039 -18.53616 -16.43386 -15.77565 -15.19489 -14.78452 -14.44773 -13.78719 -13.35923 -12.84546 -12.46251 -12.35047 -12.04355 -11.97064 -11.79820 -11.51663 -11.38528 -11.28389 -10.91607 -10.88172 -10.45581 -10.29489 -10.19500 -9.97171 -9.88869 -9.80172 -9.67481 -8.80839 -7.49584 -7.09564 -6.14881 -4.57644 3.15163 3.22791 3.25805 4.11793 4.53095 4.63763 5.03801 5.11452 5.18152 5.37806 5.68158 5.75463 5.80383 5.87607 5.96498 6.01019 6.05455 6.15216 6.18371 6.22546 6.24605 6.32008 6.45871 6.51325 6.61395 6.71894 6.75972 6.80305 6.98350 7.09197 7.49714 7.79198 8.23709 8.47837 9.08032 9.53201 10.63843 10.83891 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.034814 B = 0.008478 C = 0.008218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.081765 B = 3301.963341 C = 3406.500937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.128 3.872 3 N -0.633 5.633 4 C 0.561 3.439 5 O -0.581 6.581 6 C -0.541 4.541 7 H 0.072 0.928 8 C 0.088 3.912 9 N -0.768 5.768 10 Si 0.902 3.098 11 H -0.273 1.273 12 H -0.280 1.280 13 H -0.265 1.265 14 C 0.152 3.848 15 H 0.091 0.909 16 C -0.156 4.156 17 C -0.113 4.113 18 C -0.133 4.133 19 C -0.146 4.146 20 C -0.124 4.124 21 H 0.044 0.956 22 H 0.066 0.934 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.266 0.734 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.161 -4.824 -9.511 11.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.003 3.997 3 N -0.370 5.370 4 C 0.366 3.634 5 O -0.464 6.464 6 C -0.578 4.578 7 H 0.090 0.910 8 C -0.132 4.132 9 N -0.397 5.397 10 Si 0.727 3.273 11 H -0.199 1.199 12 H -0.206 1.206 13 H -0.189 1.189 14 C 0.047 3.953 15 H 0.109 0.891 16 C -0.214 4.214 17 C -0.133 4.133 18 C -0.171 4.171 19 C -0.183 4.183 20 C -0.161 4.161 21 H 0.063 0.937 22 H 0.085 0.915 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.868 -4.022 -9.381 10.603 hybrid contribution -0.258 -0.617 0.795 1.039 sum -3.126 -4.639 -8.586 10.247 Atomic orbital electron populations 1.22323 0.97954 1.00400 1.02153 1.21017 0.93055 0.85005 1.00618 1.48008 1.70268 1.12982 1.05733 1.18198 0.77640 0.85281 0.82236 1.90577 1.51439 1.18459 1.85897 1.21016 1.42860 1.04507 0.89423 0.91014 1.25727 0.93102 0.94159 1.00200 1.70030 1.32563 1.10258 1.26874 0.86446 0.79129 0.79866 0.81856 1.19888 1.20551 1.18893 1.20626 0.91961 0.98312 0.84430 0.89072 1.22117 0.99384 0.99902 0.99994 1.22909 0.97065 0.97416 0.95899 1.22914 0.96861 0.99385 0.97987 1.22868 0.96785 1.00486 0.98176 1.22811 0.98381 0.99563 0.95377 0.93712 0.91507 0.93384 0.93235 0.91120 0.92281 0.92683 0.93329 0.92963 0.90134 0.90239 0.92254 0.91007 0.92077 0.92106 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 9.76 37.16 0.36 -2.55 16 2 C 0.13 2.39 5.17 -4.04 -0.02 2.37 16 3 N -0.63 -14.09 2.25 -167.76 -0.38 -14.47 16 4 C 0.56 15.71 7.56 -12.99 -0.10 15.62 16 5 O -0.58 -18.58 14.37 5.20 0.07 -18.51 16 6 C -0.54 -15.06 8.19 -35.63 -0.29 -15.36 16 7 H 0.07 1.84 5.89 -52.49 -0.31 1.53 16 8 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 9 N -0.77 -23.03 11.85 55.55 0.66 -22.37 16 10 Si 0.90 20.21 29.56 -169.99 -5.03 15.18 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 13 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 14 C 0.15 2.95 2.34 -67.93 -0.16 2.79 16 15 H 0.09 2.08 6.81 -51.93 -0.35 1.72 16 16 C -0.16 -2.55 8.96 37.15 0.33 -2.22 16 17 C -0.11 -1.84 2.05 -89.81 -0.18 -2.03 16 18 C -0.13 -1.87 7.57 -25.83 -0.20 -2.07 16 19 C -0.15 -2.02 8.09 -25.83 -0.21 -2.23 16 20 C -0.12 -2.14 7.27 -25.92 -0.19 -2.32 16 21 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.07 1.33 7.46 -51.93 -0.39 0.94 16 23 H 0.05 0.77 5.27 -51.93 -0.27 0.50 16 24 H 0.05 0.80 6.45 -51.93 -0.34 0.47 16 25 H 0.07 1.39 6.55 -51.93 -0.34 1.05 16 26 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.05 0.72 6.83 -51.93 -0.35 0.36 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.24 7.19 -51.93 -0.37 0.87 16 31 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 1.05 7.25 -51.93 -0.38 0.67 16 36 H 0.08 1.75 8.10 -51.93 -0.42 1.33 16 LS Contribution 284.81 15.07 4.29 4.29 Total: -1.00 -32.12 284.81 -6.74 -38.85 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -5.61 Total: 2.67 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -0.75 Total: -5.65 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.28 Total: -36.84 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: 0.07 Total: -18.51 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.03 Total: 15.18 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.12 -6.74 -38.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325473580.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.933 kcal (2) G-P(sol) polarization free energy of solvation -32.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds