Wall clock time and date at job start Mon Mar 30 2020 03:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46492 * 109.47232 * 2 1 4 4 C 1.34778 * 120.00411 * 83.99591 * 3 2 1 5 5 O 1.21687 * 120.00245 * 179.97438 * 4 3 2 6 6 C 1.46378 * 119.99535 * 0.02562 * 4 3 2 7 7 H 1.07996 * 120.00175 * 353.16540 * 6 4 3 8 8 C 1.40050 * 119.99609 * 173.45426 * 6 4 3 9 9 N 1.30665 * 120.00195 * 5.47720 * 8 6 4 10 10 Si 1.86804 * 119.99495 * 185.48775 * 8 6 4 11 11 H 1.48496 * 109.47259 * 94.99114 * 10 8 6 12 12 H 1.48501 * 109.46539 * 214.98617 * 10 8 6 13 13 H 1.48503 * 109.47111 * 334.98490 * 10 8 6 14 14 C 1.46505 * 119.99792 * 263.99770 * 3 2 1 15 15 H 1.09003 * 109.46924 * 181.78850 * 14 3 2 16 16 C 1.52993 * 109.47070 * 301.78735 * 14 3 2 17 17 C 1.53000 * 109.47084 * 61.79010 * 14 3 2 18 18 C 1.53781 * 113.61302 * 162.85063 * 17 14 3 19 19 C 1.53950 * 87.01932 * 220.04910 * 18 17 14 20 20 C 1.53782 * 113.61286 * 65.24370 * 17 14 3 21 21 H 1.09000 * 109.47254 * 186.21349 * 1 2 3 22 22 H 1.08999 * 109.46830 * 306.21535 * 1 2 3 23 23 H 1.09002 * 109.46588 * 66.21246 * 1 2 3 24 24 H 1.09000 * 109.46806 * 239.99482 * 2 1 3 25 25 H 1.09003 * 109.46879 * 119.99897 * 2 1 3 26 26 H 0.97006 * 120.00154 * 180.02562 * 9 8 6 27 27 H 1.08997 * 109.47379 * 305.51526 * 16 14 3 28 28 H 1.09005 * 109.47444 * 65.52000 * 16 14 3 29 29 H 1.09005 * 109.47105 * 185.51613 * 16 14 3 30 30 H 1.09000 * 112.84731 * 294.04606 * 17 14 3 31 31 H 1.09001 * 113.61774 * 334.56557 * 18 17 14 32 32 H 1.08998 * 113.61844 * 105.47030 * 18 17 14 33 33 H 1.09002 * 113.53473 * 270.80954 * 19 18 17 34 34 H 1.09000 * 113.74935 * 139.94706 * 19 18 17 35 35 H 1.09003 * 113.61334 * 254.52252 * 20 17 14 36 36 H 1.08996 * 113.61945 * 25.43131 * 20 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1280 2.0573 1.1608 5 8 2.5341 3.2044 1.1608 6 6 1.7595 1.4112 2.4215 7 1 1.2971 0.4353 2.4133 8 6 2.0011 2.0614 3.6382 9 7 2.4557 3.2864 3.6454 10 14 1.6737 1.1771 5.2508 11 1 2.9312 0.5563 5.7391 12 1 1.1789 2.1504 6.2573 13 1 0.6508 0.1218 5.0378 14 6 2.3877 2.0275 -1.2618 15 1 2.7552 3.0338 -1.0607 16 6 3.4839 1.2124 -1.9507 17 6 1.1611 2.1053 -2.1731 18 6 1.3123 3.1129 -3.3249 19 6 -0.1561 3.5001 -3.0720 20 6 0.0451 3.0119 -1.6277 21 1 -0.3634 -1.0216 0.1112 22 1 -0.3633 0.6072 0.8291 23 1 -0.3632 0.4145 -0.9404 24 1 1.8933 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 2.6234 3.7366 4.4881 27 1 4.3192 1.0738 -1.2644 28 1 3.0860 0.2396 -2.2399 29 1 3.8275 1.7429 -2.8387 30 1 0.8094 1.1247 -2.4940 31 1 2.0183 3.9158 -3.1128 32 1 1.4806 2.6452 -4.2950 33 1 -0.8681 2.9015 -3.6402 34 1 -0.3472 4.5705 -3.1485 35 1 -0.8082 2.4628 -1.2297 36 1 0.4039 3.7872 -0.9508 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000325473580.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:13 Heat of formation + Delta-G solvation = -49.167819 kcal Electronic energy + Delta-G solvation = -16576.331211 eV Core-core repulsion = 14059.941406 eV Total energy + Delta-G solvation = -2516.389805 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.70132 -38.78196 -36.19146 -34.63136 -32.85669 -30.14092 -28.21318 -26.69307 -26.18864 -23.89886 -22.98484 -20.56106 -20.11843 -18.35553 -17.73474 -16.81766 -16.23525 -16.02961 -15.48589 -14.95504 -14.43298 -14.31720 -13.77478 -13.55746 -13.35166 -13.27038 -13.16788 -12.99293 -12.76960 -12.69709 -12.45905 -12.24260 -11.96915 -11.68068 -11.60504 -11.33289 -11.13857 -11.00866 -10.89331 -9.68885 -8.93015 -8.25116 -6.77020 1.38059 1.39140 1.54359 2.24301 2.50799 2.89959 3.65918 3.78062 3.86397 3.90027 4.09436 4.31751 4.38926 4.47672 4.55398 4.71702 4.77153 4.82702 4.87941 4.91920 4.96179 5.04010 5.09443 5.11858 5.20278 5.26279 5.34855 5.37921 5.43443 5.58095 5.72400 5.92017 6.23160 6.59504 6.92758 7.54346 8.55366 8.74476 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.034814 B = 0.008478 C = 0.008218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.081765 B = 3301.963341 C = 3406.500937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.122 3.878 3 N -0.632 5.632 4 C 0.544 3.456 5 O -0.637 6.637 6 C -0.563 4.563 7 H 0.089 0.911 8 C 0.027 3.973 9 N -0.825 5.825 10 Si 0.989 3.011 11 H -0.264 1.264 12 H -0.275 1.275 13 H -0.247 1.247 14 C 0.145 3.855 15 H 0.043 0.957 16 C -0.145 4.145 17 C -0.106 4.106 18 C -0.124 4.124 19 C -0.129 4.129 20 C -0.137 4.137 21 H 0.077 0.923 22 H 0.030 0.970 23 H 0.060 0.940 24 H 0.086 0.914 25 H 0.058 0.942 26 H 0.271 0.729 27 H 0.032 0.968 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.239 -7.542 -11.070 14.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.001 4.001 3 N -0.366 5.366 4 C 0.350 3.650 5 O -0.524 6.524 6 C -0.600 4.600 7 H 0.107 0.893 8 C -0.187 4.187 9 N -0.455 5.455 10 Si 0.809 3.191 11 H -0.189 1.189 12 H -0.200 1.200 13 H -0.171 1.171 14 C 0.041 3.959 15 H 0.061 0.939 16 C -0.203 4.203 17 C -0.125 4.125 18 C -0.162 4.162 19 C -0.166 4.166 20 C -0.175 4.175 21 H 0.096 0.904 22 H 0.049 0.951 23 H 0.079 0.921 24 H 0.104 0.896 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.051 0.949 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.124 0.876 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.119 0.881 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.960 -6.788 -10.994 13.514 hybrid contribution 0.080 0.236 1.210 1.235 sum -3.881 -6.552 -9.785 12.399 Atomic orbital electron populations 1.22210 0.96455 1.01829 1.01340 1.21263 0.94243 0.82825 1.01805 1.47859 1.69318 1.14177 1.05294 1.18553 0.77292 0.84894 0.84253 1.90527 1.53809 1.20867 1.87236 1.21489 1.43153 1.05268 0.90077 0.89282 1.26962 0.92160 0.94777 1.04823 1.70216 1.34315 1.12611 1.28320 0.85127 0.79589 0.78607 0.75744 1.18856 1.20038 1.17050 1.20792 0.94658 0.96309 0.84160 0.93898 1.22022 0.97409 1.00936 0.99976 1.22901 0.94785 0.98934 0.95919 1.22862 0.96676 0.98246 0.98441 1.22841 0.97394 1.01241 0.95115 1.22749 0.98803 0.99007 0.96934 0.90387 0.95081 0.92118 0.89565 0.92359 0.91941 0.94857 0.90584 0.90464 0.87591 0.91676 0.88845 0.88070 0.91741 0.92442 0.94757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.15 9.76 71.98 0.70 -4.44 16 2 C 0.12 4.36 5.17 86.38 0.45 4.80 16 3 N -0.63 -28.61 2.25 -802.88 -1.81 -30.42 16 4 C 0.54 32.06 7.56 86.36 0.65 32.71 16 5 O -0.64 -43.72 14.37 -4.31 -0.06 -43.79 16 6 C -0.56 -32.27 8.19 24.83 0.20 -32.07 16 7 H 0.09 4.61 5.89 -2.91 -0.02 4.59 16 8 C 0.03 1.55 5.50 85.31 0.47 2.02 16 9 N -0.82 -51.82 11.85 21.84 0.26 -51.56 16 10 Si 0.99 42.00 29.56 68.60 2.03 44.03 16 11 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 12 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 13 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 14 C 0.15 5.69 2.34 44.99 0.11 5.79 16 15 H 0.04 2.09 6.81 -2.39 -0.02 2.08 16 16 C -0.15 -4.50 8.96 71.98 0.65 -3.85 16 17 C -0.11 -3.28 2.05 -10.27 -0.02 -3.30 16 18 C -0.12 -3.19 7.57 31.18 0.24 -2.95 16 19 C -0.13 -3.27 8.09 31.18 0.25 -3.02 16 20 C -0.14 -4.78 7.27 31.12 0.23 -4.55 16 21 H 0.08 1.99 8.14 -2.39 -0.02 1.98 16 22 H 0.03 1.21 7.46 -2.39 -0.02 1.19 16 23 H 0.06 1.78 5.27 -2.39 -0.01 1.77 16 24 H 0.09 2.46 6.45 -2.39 -0.02 2.44 16 25 H 0.06 2.23 6.55 -2.39 -0.02 2.21 16 26 H 0.27 15.49 8.29 -92.70 -0.77 14.72 16 27 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.08 1.93 6.83 -2.38 -0.02 1.92 16 29 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.11 2.79 7.19 -2.39 -0.02 2.77 16 31 H 0.06 1.86 8.04 -2.39 -0.02 1.84 16 32 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.06 1.98 7.25 -2.39 -0.02 1.96 16 36 H 0.03 1.52 8.10 -2.39 -0.02 1.50 16 Total: -1.00 -76.11 284.81 5.39 -70.72 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 1.05 Total: 19.87 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: 3.92 Total: -8.86 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -1.55 Total: -81.97 kcal Atomic # 8 Polarization: -43.72 SS G_CDS: -0.06 Total: -43.79 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -76.11 5.39 -70.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325473580.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.555 kcal (2) G-P(sol) polarization free energy of solvation -76.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds