Wall clock time and date at job start Mon Mar 30 2020 03:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47581 * 2 1 4 4 C 1.50703 * 109.46669 * 120.00293 * 2 1 3 5 5 H 1.07999 * 120.00424 * 120.00457 * 4 2 1 6 6 C 1.37880 * 119.99994 * 299.98990 * 4 2 1 7 7 N 1.31514 * 119.99923 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99943 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46868 * 90.01023 * 8 6 4 10 10 H 1.48506 * 109.46858 * 210.00469 * 8 6 4 11 11 H 1.48490 * 109.47353 * 330.00717 * 8 6 4 12 12 N 1.46897 * 109.47236 * 239.99736 * 2 1 3 13 13 C 1.46896 * 111.00040 * 85.00068 * 12 2 1 14 14 C 1.53000 * 109.47365 * 179.97438 * 13 12 2 15 15 H 1.08994 * 110.66914 * 303.38206 * 14 13 12 16 16 C 1.54998 * 110.74668 * 66.59847 * 14 13 12 17 17 C 1.55821 * 102.79280 * 118.50909 * 16 14 13 18 18 H 1.08993 * 115.39142 * 158.83513 * 17 16 14 19 19 C 1.55824 * 105.32402 * 287.31019 * 17 16 14 20 20 C 1.55008 * 102.78832 * 72.68574 * 19 17 16 21 21 C 1.55821 * 102.78677 * 0.02562 * 20 19 17 22 22 H 1.08994 * 115.38529 * 158.83959 * 21 20 19 23 23 O 1.46535 * 101.24717 * 32.41399 * 21 20 19 24 24 H 1.09005 * 109.46964 * 59.99526 * 1 2 3 25 25 H 1.08995 * 109.47581 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47366 * 300.00305 * 1 2 3 27 27 H 0.97000 * 120.00021 * 179.97438 * 7 6 4 28 28 H 1.00904 * 111.00408 * 208.95937 * 12 2 1 29 29 H 1.09003 * 109.47015 * 60.00565 * 13 12 2 30 30 H 1.08998 * 109.47557 * 300.00726 * 13 12 2 31 31 H 1.09002 * 110.74802 * 236.83530 * 16 14 13 32 32 H 1.09005 * 110.75038 * 0.17748 * 16 14 13 33 33 H 1.08996 * 110.74776 * 191.01099 * 19 17 16 34 34 H 1.08997 * 110.74653 * 314.36334 * 19 17 16 35 35 H 1.08998 * 110.74769 * 118.32626 * 20 19 17 36 36 H 1.09000 * 110.74915 * 241.67561 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6992 -0.2394 2.4828 7 7 0.9429 0.8298 2.6034 8 14 2.3223 -1.1196 4.0080 9 1 3.6304 -0.5441 4.4120 10 1 1.3442 -0.9490 5.1123 11 1 2.4878 -2.5654 3.7123 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2225 -2.3468 14 6 2.5963 -0.5330 -3.5741 15 1 3.5663 -0.9857 -3.3689 16 6 1.5737 -1.6067 -4.0258 17 6 1.1999 -1.1430 -5.4656 18 1 0.7815 -1.9150 -6.1114 19 6 0.3098 0.1214 -5.2730 20 6 1.3324 1.1952 -4.8213 21 6 2.6776 0.4088 -4.8136 22 1 3.5771 1.0210 -4.8772 23 8 2.4601 -0.5401 -5.9088 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 0.7083 1.1610 3.4844 28 1 2.9173 -1.1206 -1.0287 29 1 2.7590 1.0460 -2.1182 30 1 1.0872 0.6163 -2.5525 31 1 2.0343 -2.5944 -4.0455 32 1 0.6968 -1.6014 -3.3784 33 1 -0.1618 0.4085 -6.2127 34 1 -0.4393 -0.0479 -4.4996 35 1 1.3702 2.0173 -5.5360 36 1 1.0927 1.5609 -3.8228 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378756508.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:21 Heat of formation + Delta-G solvation = -36.858682 kcal Electronic energy + Delta-G solvation = -16139.332027 eV Core-core repulsion = 13623.475986 eV Total energy + Delta-G solvation = -2515.856041 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.71444 -35.99496 -33.24141 -31.80727 -30.57790 -29.72175 -27.87312 -25.30304 -23.76453 -21.84627 -21.03815 -19.79499 -19.18828 -16.88454 -16.40821 -15.63726 -14.79811 -14.76677 -14.12922 -13.97587 -13.26408 -12.96082 -12.48165 -12.43023 -11.92614 -11.55542 -11.43195 -11.25474 -11.18332 -10.92339 -10.83026 -10.59749 -10.35408 -10.18280 -10.08069 -9.93495 -9.87293 -9.62951 -8.83393 -8.48766 -7.26687 -6.04165 -4.10567 3.28248 3.35028 3.39007 3.94313 4.38440 4.65999 4.72573 4.82284 5.04520 5.23487 5.27614 5.29850 5.38536 5.53693 5.66518 5.69042 5.89114 5.95792 5.99832 6.10690 6.13114 6.30280 6.35994 6.47212 6.55606 6.77095 6.86892 7.11422 7.22046 7.49193 7.77012 7.88523 8.26053 8.38271 8.66800 9.00435 9.55599 11.02205 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.055674 B = 0.005915 C = 0.005738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.803189 B = 4732.914789 C = 4878.354679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.211 3.789 3 H -0.001 1.001 4 C -0.518 4.518 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.687 5.687 13 C 0.065 3.935 14 C -0.111 4.111 15 H 0.075 0.925 16 C -0.130 4.130 17 C 0.056 3.944 18 H 0.123 0.877 19 C -0.146 4.146 20 C -0.157 4.157 21 C 0.066 3.934 22 H 0.124 0.876 23 O -0.381 6.381 24 H 0.002 0.998 25 H 0.031 0.969 26 H 0.080 0.920 27 H 0.261 0.739 28 H 0.329 0.671 29 H 0.018 0.982 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.331 -0.691 -13.137 13.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.104 3.896 3 H 0.017 0.983 4 C -0.557 4.557 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.318 5.318 13 C -0.065 4.065 14 C -0.130 4.130 15 H 0.093 0.907 16 C -0.168 4.168 17 C -0.001 4.001 18 H 0.141 0.859 19 C -0.184 4.184 20 C -0.195 4.195 21 C 0.008 3.992 22 H 0.142 0.858 23 O -0.300 6.300 24 H 0.021 0.979 25 H 0.050 0.950 26 H 0.098 0.902 27 H 0.071 0.929 28 H 0.146 0.854 29 H 0.036 0.964 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.249 -0.863 -13.352 13.382 hybrid contribution 0.957 0.203 1.313 1.637 sum 0.708 -0.660 -12.039 12.078 Atomic orbital electron populations 1.21706 0.97942 0.99270 0.99243 1.19092 0.92565 0.92273 0.85690 0.98299 1.21275 1.31411 1.12503 0.90496 0.92237 1.24925 0.95037 0.95008 0.99063 1.69896 1.36630 1.22961 1.23461 0.86524 0.78470 0.80078 0.82490 1.20767 1.21196 1.19846 1.60724 1.32020 1.33060 1.05952 1.22069 0.99757 0.93840 0.90796 1.22787 0.99471 0.96100 0.94616 0.90666 1.23154 1.00257 0.98421 0.94922 1.24723 0.84856 0.95229 0.95312 0.85913 1.23198 0.98205 0.95477 1.01495 1.23404 0.95191 0.98154 1.02743 1.24637 0.97921 0.90736 0.85932 0.85813 1.89998 1.40599 1.54968 1.44439 0.97858 0.94996 0.90160 0.92932 0.85402 0.96363 0.90944 0.91493 0.89288 0.91503 0.90379 0.91497 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.04 9.19 37.16 0.34 -2.70 16 2 C 0.21 5.31 2.60 -68.87 -0.18 5.13 16 3 H 0.00 -0.02 7.80 -51.93 -0.40 -0.42 16 4 C -0.52 -14.18 8.59 -34.44 -0.30 -14.48 16 5 H 0.06 1.61 7.62 -52.49 -0.40 1.21 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.42 11.32 55.43 0.63 -24.79 16 8 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 12 N -0.69 -14.34 6.08 -107.96 -0.66 -15.00 16 13 C 0.07 1.14 3.99 -3.83 -0.02 1.12 16 14 C -0.11 -1.64 3.14 -88.02 -0.28 -1.91 16 15 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 16 C -0.13 -1.84 6.00 -24.17 -0.14 -1.99 16 17 C 0.06 0.72 5.71 -23.72 -0.14 0.58 16 18 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 19 C -0.15 -1.77 6.52 -24.16 -0.16 -1.92 16 20 C -0.16 -1.99 6.17 -24.17 -0.15 -2.13 16 21 C 0.07 0.88 5.48 -23.69 -0.13 0.75 16 22 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 23 O -0.38 -5.62 11.65 -35.23 -0.41 -6.03 16 24 H 0.00 0.05 7.45 -51.93 -0.39 -0.33 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 28 H 0.33 6.81 8.22 -39.29 -0.32 6.49 16 29 H 0.02 0.33 8.06 -51.93 -0.42 -0.09 16 30 H 0.07 1.28 5.18 -51.93 -0.27 1.01 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.09 1.38 7.39 -51.93 -0.38 0.99 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.96 7.80 -51.93 -0.41 0.55 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 1.19 5.27 -51.93 -0.27 0.92 16 LS Contribution 278.76 15.07 4.20 4.20 Total: -1.00 -28.71 278.76 -8.17 -36.88 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -5.67 Total: 4.49 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -1.24 Total: -15.96 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: -0.03 Total: -39.79 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.41 Total: -6.03 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.71 -8.17 -36.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378756508.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.021 kcal (2) G-P(sol) polarization free energy of solvation -28.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds