Wall clock time and date at job start Mon Mar 30 2020 03:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08998 * 109.47502 * 2 1 4 4 C 1.50700 * 109.47625 * 239.99710 * 2 1 3 5 5 H 1.07995 * 120.00239 * 245.68038 * 4 2 1 6 6 C 1.37882 * 119.99815 * 65.67402 * 4 2 1 7 7 N 1.31513 * 119.99878 * 356.26402 * 6 4 2 8 8 Si 1.86799 * 119.99861 * 176.26244 * 6 4 2 9 9 H 1.48504 * 109.46967 * 94.99497 * 8 6 4 10 10 H 1.48500 * 109.47006 * 214.99307 * 8 6 4 11 11 H 1.48495 * 109.47080 * 334.99492 * 8 6 4 12 12 N 1.46900 * 109.47319 * 119.99605 * 2 1 3 13 13 C 1.46895 * 111.00279 * 275.00558 * 12 2 1 14 14 C 1.52999 * 109.47469 * 179.97438 * 13 12 2 15 15 H 1.09001 * 110.66304 * 56.50125 * 14 13 12 16 16 C 1.54997 * 110.75073 * 293.28440 * 14 13 12 17 17 C 1.55825 * 102.79082 * 241.67474 * 16 14 13 18 18 H 1.08997 * 115.38441 * 201.88857 * 17 16 14 19 19 C 1.55823 * 105.32583 * 73.41297 * 17 16 14 20 20 C 1.56780 * 101.97410 * 286.86551 * 19 17 16 21 21 C 1.55819 * 102.93492 * 0.30387 * 20 19 17 22 22 H 1.09000 * 115.93629 * 201.35693 * 21 20 19 23 23 O 1.46532 * 101.24058 * 327.58124 * 17 16 14 24 24 H 1.09009 * 109.46893 * 64.68244 * 1 2 3 25 25 H 1.09005 * 109.47329 * 184.67805 * 1 2 3 26 26 H 1.09003 * 109.47610 * 304.68421 * 1 2 3 27 27 H 0.97003 * 119.99918 * 180.02562 * 7 6 4 28 28 H 1.00906 * 110.99993 * 38.95208 * 12 2 1 29 29 H 1.08999 * 109.47179 * 299.99572 * 13 12 2 30 30 H 1.08999 * 109.47334 * 59.99056 * 13 12 2 31 31 H 1.09007 * 110.74684 * 359.97438 * 16 14 13 32 32 H 1.08999 * 110.74910 * 123.34846 * 16 14 13 33 33 H 1.08997 * 110.74569 * 45.63407 * 19 17 16 34 34 H 1.09002 * 110.74522 * 168.98611 * 19 17 16 35 35 H 1.08995 * 110.85923 * 241.84504 * 20 19 17 36 36 H 1.08999 * 110.65498 * 118.66537 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5755 -1.6389 -1.1339 6 6 1.7985 -0.1752 -2.4793 7 7 1.0743 0.9158 -2.6021 8 14 2.5102 -0.9995 -3.9970 9 1 1.4963 -1.9100 -4.5871 10 1 2.8849 0.0362 -4.9931 11 1 3.7151 -1.7799 -3.6173 12 7 2.0196 -0.6924 1.1995 13 6 2.0823 0.2226 2.3469 14 6 2.5949 -0.5330 3.5745 15 1 3.5639 -0.9880 3.3692 16 6 1.5702 -1.6041 4.0275 17 6 1.1945 -1.1356 5.4654 18 1 0.7855 -1.9081 6.1166 19 6 0.2910 0.1183 5.2671 20 6 1.3312 1.2005 4.8145 21 6 2.6753 0.4122 4.8108 22 1 3.5813 1.0142 4.8808 23 8 2.4549 -0.5336 5.9082 24 1 -0.3633 0.4395 -0.9290 25 1 -0.3634 -1.0243 0.0838 26 1 -0.3634 0.5848 0.8450 27 1 0.9095 1.2921 -3.4808 28 1 1.4495 -1.4978 1.4102 29 1 2.7587 1.0463 2.1183 30 1 1.0869 0.6164 2.5524 31 1 0.6942 -1.5991 3.3789 32 1 2.0295 -2.5923 4.0510 33 1 -0.4579 -0.0634 4.4962 34 1 -0.1818 0.4060 6.2062 35 1 1.3689 2.0245 5.5269 36 1 1.0954 1.5663 3.8152 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382177477.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:23 Heat of formation + Delta-G solvation = -36.274542 kcal Electronic energy + Delta-G solvation = -16145.179759 eV Core-core repulsion = 13629.349048 eV Total energy + Delta-G solvation = -2515.830710 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.74736 -36.10443 -33.23193 -31.78515 -30.58756 -29.82576 -27.80275 -25.15748 -23.86628 -21.89656 -21.16642 -20.11434 -19.15793 -16.86950 -16.40654 -15.72880 -15.14663 -14.60494 -14.05184 -13.57830 -13.26151 -13.09177 -12.61136 -12.20651 -12.07811 -11.72805 -11.57455 -11.30576 -11.21487 -10.98921 -10.88209 -10.60137 -10.47243 -10.28337 -10.18539 -9.97096 -9.91561 -9.64143 -8.96958 -8.37029 -7.19243 -5.98783 -4.01305 3.32562 3.39434 3.44954 3.90878 4.43876 4.60935 4.65530 4.77409 4.97356 5.16588 5.23348 5.30682 5.33323 5.45136 5.60694 5.67939 5.80074 5.88380 5.92970 6.07116 6.07308 6.21398 6.25005 6.38665 6.54132 6.65234 6.71316 6.79528 7.08065 7.35441 7.70076 7.88019 8.26059 8.55874 8.62892 9.06124 9.63879 11.08952 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.055175 B = 0.005919 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.352739 B = 4729.212808 C = 4868.656650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.211 3.789 3 H 0.035 0.965 4 C -0.494 4.494 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.684 5.684 13 C 0.066 3.934 14 C -0.111 4.111 15 H 0.087 0.913 16 C -0.142 4.142 17 C 0.059 3.941 18 H 0.123 0.877 19 C -0.146 4.146 20 C -0.158 4.158 21 C 0.067 3.933 22 H 0.127 0.873 23 O -0.379 6.379 24 H 0.084 0.916 25 H 0.026 0.974 26 H 0.005 0.995 27 H 0.259 0.741 28 H 0.323 0.677 29 H 0.065 0.935 30 H 0.028 0.972 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.131 -1.106 13.805 13.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.103 3.897 3 H 0.053 0.947 4 C -0.533 4.533 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.724 3.276 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.314 5.314 13 C -0.064 4.064 14 C -0.130 4.130 15 H 0.105 0.895 16 C -0.180 4.180 17 C 0.001 3.999 18 H 0.140 0.860 19 C -0.184 4.184 20 C -0.196 4.196 21 C 0.009 3.991 22 H 0.144 0.856 23 O -0.299 6.299 24 H 0.102 0.898 25 H 0.045 0.955 26 H 0.024 0.976 27 H 0.069 0.931 28 H 0.140 0.860 29 H 0.083 0.917 30 H 0.046 0.954 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.380 -0.939 13.690 13.728 hybrid contribution -0.817 -0.196 -0.881 1.217 sum -1.196 -1.134 12.810 12.916 Atomic orbital electron populations 1.22422 1.00977 0.98226 1.00898 1.19178 0.89357 0.94578 0.86603 0.94670 1.21160 1.34091 1.08229 0.89833 0.92024 1.24957 0.95375 0.95230 0.99028 1.69911 1.38994 1.21394 1.23505 0.86509 0.79449 0.78999 0.82595 1.20945 1.21322 1.19810 1.60801 1.58114 1.09055 1.03438 1.22041 0.98448 0.95720 0.90209 1.22817 1.00089 0.95702 0.94379 0.89474 1.23276 0.99634 0.99375 0.95677 1.24644 0.85130 0.95236 0.94890 0.85963 1.23491 0.97889 0.95505 1.01472 1.23709 0.94955 0.98047 1.02881 1.24661 0.97900 0.90737 0.85788 0.85557 1.90018 1.40197 1.55262 1.44381 0.89750 0.95527 0.97588 0.93097 0.85975 0.91694 0.95441 0.90643 0.90961 0.90534 0.91357 0.91412 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.93 9.04 37.15 0.34 -3.59 16 2 C 0.21 5.26 2.50 -68.87 -0.17 5.09 16 3 H 0.04 0.97 7.80 -51.93 -0.40 0.56 16 4 C -0.49 -13.72 8.77 -34.44 -0.30 -14.02 16 5 H 0.06 1.73 7.82 -52.49 -0.41 1.32 16 6 C 0.05 1.52 5.34 -17.82 -0.10 1.42 16 7 N -0.90 -25.80 11.58 55.43 0.64 -25.16 16 8 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.68 -14.31 6.23 -107.96 -0.67 -14.98 16 13 C 0.07 1.13 4.07 -3.83 -0.02 1.12 16 14 C -0.11 -1.63 3.21 -88.06 -0.28 -1.91 16 15 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 16 C -0.14 -1.89 5.67 -24.17 -0.14 -2.03 16 17 C 0.06 0.71 5.66 -23.72 -0.13 0.58 16 18 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 19 C -0.15 -1.69 6.65 -23.18 -0.15 -1.85 16 20 C -0.16 -1.95 6.21 -23.18 -0.14 -2.10 16 21 C 0.07 0.89 5.47 -23.72 -0.13 0.76 16 22 H 0.13 1.48 8.14 -51.93 -0.42 1.05 16 23 O -0.38 -5.48 11.65 -35.23 -0.41 -5.89 16 24 H 0.08 2.23 6.30 -51.92 -0.33 1.90 16 25 H 0.03 0.59 8.05 -51.93 -0.42 0.17 16 26 H 0.01 0.11 7.57 -51.93 -0.39 -0.28 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.32 6.42 7.18 -39.29 -0.28 6.14 16 29 H 0.06 1.17 8.06 -51.93 -0.42 0.75 16 30 H 0.03 0.47 5.26 -51.93 -0.27 0.20 16 31 H 0.07 1.03 6.71 -51.92 -0.35 0.68 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.89 7.79 -51.93 -0.40 0.48 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 1.18 5.27 -51.93 -0.27 0.91 16 LS Contribution 277.89 15.07 4.19 4.19 Total: -1.00 -29.09 277.89 -8.13 -37.23 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.62 Total: 4.62 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -1.23 Total: -16.53 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: -0.03 Total: -40.14 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.41 Total: -5.89 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.09 -8.13 -37.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382177477.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.951 kcal (2) G-P(sol) polarization free energy of solvation -29.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds