Wall clock time and date at job start Mon Mar 30 2020 03:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08998 * 109.47502 * 2 1 4 4 C 1.50700 * 109.47625 * 239.99710 * 2 1 3 5 5 H 1.07995 * 120.00239 * 245.68038 * 4 2 1 6 6 C 1.37882 * 119.99815 * 65.67402 * 4 2 1 7 7 N 1.31513 * 119.99878 * 356.26402 * 6 4 2 8 8 Si 1.86799 * 119.99861 * 176.26244 * 6 4 2 9 9 H 1.48504 * 109.46967 * 94.99497 * 8 6 4 10 10 H 1.48500 * 109.47006 * 214.99307 * 8 6 4 11 11 H 1.48495 * 109.47080 * 334.99492 * 8 6 4 12 12 N 1.46900 * 109.47319 * 119.99605 * 2 1 3 13 13 C 1.46895 * 111.00279 * 275.00558 * 12 2 1 14 14 C 1.52999 * 109.47469 * 179.97438 * 13 12 2 15 15 H 1.09001 * 110.66304 * 56.50125 * 14 13 12 16 16 C 1.54997 * 110.75073 * 293.28440 * 14 13 12 17 17 C 1.55825 * 102.79082 * 241.67474 * 16 14 13 18 18 H 1.08997 * 115.38441 * 201.88857 * 17 16 14 19 19 C 1.55823 * 105.32583 * 73.41297 * 17 16 14 20 20 C 1.56780 * 101.97410 * 286.86551 * 19 17 16 21 21 C 1.55819 * 102.93492 * 0.30387 * 20 19 17 22 22 H 1.09000 * 115.93629 * 201.35693 * 21 20 19 23 23 O 1.46532 * 101.24058 * 327.58124 * 17 16 14 24 24 H 1.09009 * 109.46893 * 64.68244 * 1 2 3 25 25 H 1.09005 * 109.47329 * 184.67805 * 1 2 3 26 26 H 1.09003 * 109.47610 * 304.68421 * 1 2 3 27 27 H 0.97003 * 119.99918 * 180.02562 * 7 6 4 28 28 H 1.00906 * 110.99993 * 38.95208 * 12 2 1 29 29 H 1.08999 * 109.47179 * 299.99572 * 13 12 2 30 30 H 1.08999 * 109.47334 * 59.99056 * 13 12 2 31 31 H 1.09007 * 110.74684 * 359.97438 * 16 14 13 32 32 H 1.08999 * 110.74910 * 123.34846 * 16 14 13 33 33 H 1.08997 * 110.74569 * 45.63407 * 19 17 16 34 34 H 1.09002 * 110.74522 * 168.98611 * 19 17 16 35 35 H 1.08995 * 110.85923 * 241.84504 * 20 19 17 36 36 H 1.08999 * 110.65498 * 118.66537 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5755 -1.6389 -1.1339 6 6 1.7985 -0.1752 -2.4793 7 7 1.0743 0.9158 -2.6021 8 14 2.5102 -0.9995 -3.9970 9 1 1.4963 -1.9100 -4.5871 10 1 2.8849 0.0362 -4.9931 11 1 3.7151 -1.7799 -3.6173 12 7 2.0196 -0.6924 1.1995 13 6 2.0823 0.2226 2.3469 14 6 2.5949 -0.5330 3.5745 15 1 3.5639 -0.9880 3.3692 16 6 1.5702 -1.6041 4.0275 17 6 1.1945 -1.1356 5.4654 18 1 0.7855 -1.9081 6.1166 19 6 0.2910 0.1183 5.2671 20 6 1.3312 1.2005 4.8145 21 6 2.6753 0.4122 4.8108 22 1 3.5813 1.0142 4.8808 23 8 2.4549 -0.5336 5.9082 24 1 -0.3633 0.4395 -0.9290 25 1 -0.3634 -1.0243 0.0838 26 1 -0.3634 0.5848 0.8450 27 1 0.9095 1.2921 -3.4808 28 1 1.4495 -1.4978 1.4102 29 1 2.7587 1.0463 2.1183 30 1 1.0869 0.6164 2.5524 31 1 0.6942 -1.5991 3.3789 32 1 2.0295 -2.5923 4.0510 33 1 -0.4579 -0.0634 4.4962 34 1 -0.1818 0.4060 6.2062 35 1 1.3689 2.0245 5.5269 36 1 1.0954 1.5663 3.8152 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382177477.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:23 Heat of formation + Delta-G solvation = -55.437671 kcal Electronic energy + Delta-G solvation = -16146.010734 eV Core-core repulsion = 13629.349048 eV Total energy + Delta-G solvation = -2516.661686 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.81265 -37.82825 -34.95695 -33.26407 -31.87117 -30.85118 -29.43794 -27.23424 -25.31932 -22.97322 -22.32891 -21.86420 -20.32818 -18.40075 -17.88385 -16.98411 -16.81569 -16.25361 -15.19303 -14.94663 -14.80254 -14.79964 -13.82029 -13.68531 -13.55325 -13.20605 -12.93767 -12.81398 -12.70293 -12.52842 -12.40100 -12.21825 -12.13880 -11.82643 -11.56766 -11.50364 -11.00580 -10.98747 -10.82821 -10.49383 -8.90482 -8.10495 -6.20902 1.42318 1.43800 1.55341 2.44270 2.90287 3.18551 3.43700 3.64084 3.75008 3.90807 4.00433 4.24223 4.27752 4.32140 4.35004 4.56509 4.60968 4.68940 4.83899 4.86969 4.87592 5.00161 5.02863 5.09808 5.13099 5.18893 5.27177 5.32218 5.44114 5.65954 5.69572 5.79148 6.26480 6.66972 6.86031 6.95027 7.48972 8.95713 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.055175 B = 0.005919 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.352739 B = 4729.212808 C = 4868.656650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.215 3.785 3 H 0.003 0.997 4 C -0.516 4.516 5 H 0.053 0.947 6 C 0.008 3.992 7 N -0.924 5.924 8 Si 0.960 3.040 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.689 5.689 13 C 0.072 3.928 14 C -0.108 4.108 15 H 0.074 0.926 16 C -0.142 4.142 17 C 0.061 3.939 18 H 0.147 0.853 19 C -0.145 4.145 20 C -0.159 4.159 21 C 0.068 3.932 22 H 0.139 0.861 23 O -0.395 6.395 24 H 0.055 0.945 25 H 0.034 0.966 26 H 0.026 0.974 27 H 0.261 0.739 28 H 0.331 0.669 29 H 0.052 0.948 30 H 0.035 0.965 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.393 -1.730 14.736 14.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.107 3.893 3 H 0.021 0.979 4 C -0.554 4.554 5 H 0.071 0.929 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.785 3.215 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.320 5.320 13 C -0.057 4.057 14 C -0.127 4.127 15 H 0.093 0.907 16 C -0.180 4.180 17 C 0.004 3.996 18 H 0.165 0.835 19 C -0.182 4.182 20 C -0.196 4.196 21 C 0.010 3.990 22 H 0.157 0.843 23 O -0.314 6.314 24 H 0.074 0.926 25 H 0.053 0.947 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.149 0.851 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.644 -1.571 14.640 14.738 hybrid contribution -0.726 0.011 -1.131 1.344 sum -1.370 -1.560 13.509 13.668 Atomic orbital electron populations 1.22219 0.99986 0.98798 1.00217 1.18931 0.90000 0.92766 0.87621 0.97937 1.21471 1.34354 1.08244 0.91357 0.92856 1.25719 0.95612 0.95828 1.01856 1.70029 1.39730 1.22456 1.24177 0.85520 0.78794 0.78115 0.79033 1.20123 1.20934 1.19564 1.60647 1.58011 1.09708 1.03613 1.22015 0.98681 0.95065 0.89935 1.22713 0.99747 0.96373 0.93873 0.90736 1.23272 0.99033 0.99015 0.96647 1.24857 0.84537 0.95918 0.94318 0.83513 1.23515 0.97586 0.94848 1.02273 1.23701 0.94634 0.98651 1.02659 1.24751 0.99090 0.90541 0.84616 0.84334 1.90011 1.41242 1.55594 1.44583 0.92626 0.94654 0.95501 0.93004 0.85143 0.92987 0.94724 0.90901 0.90676 0.90504 0.89778 0.90096 0.90302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.21 9.04 71.98 0.65 -6.56 16 2 C 0.22 10.88 2.50 44.17 0.11 10.99 16 3 H 0.00 0.15 7.80 -2.39 -0.02 0.13 16 4 C -0.52 -28.86 8.77 25.60 0.22 -28.63 16 5 H 0.05 3.00 7.82 -2.91 -0.02 2.98 16 6 C 0.01 0.44 5.34 84.66 0.45 0.89 16 7 N -0.92 -53.56 11.58 21.45 0.25 -53.31 16 8 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 9 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 N -0.69 -28.79 6.23 -495.48 -3.09 -31.88 16 13 C 0.07 2.47 4.07 86.30 0.35 2.82 16 14 C -0.11 -3.07 3.21 -9.13 -0.03 -3.10 16 15 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 16 C -0.14 -3.54 5.67 32.25 0.18 -3.36 16 17 C 0.06 1.32 5.66 32.55 0.18 1.51 16 18 H 0.15 2.46 8.14 -2.39 -0.02 2.44 16 19 C -0.14 -2.98 6.65 32.89 0.22 -2.76 16 20 C -0.16 -3.61 6.21 32.89 0.20 -3.41 16 21 C 0.07 1.69 5.47 32.55 0.18 1.86 16 22 H 0.14 3.04 8.14 -2.39 -0.02 3.02 16 23 O -0.39 -10.53 11.65 -148.98 -1.74 -12.26 16 24 H 0.05 2.96 6.30 -2.38 -0.02 2.94 16 25 H 0.03 1.55 8.05 -2.38 -0.02 1.54 16 26 H 0.03 1.11 7.57 -2.39 -0.02 1.09 16 27 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 28 H 0.33 12.92 7.18 -89.69 -0.64 12.27 16 29 H 0.05 1.90 8.06 -2.39 -0.02 1.88 16 30 H 0.03 1.16 5.26 -2.39 -0.01 1.14 16 31 H 0.07 1.86 6.71 -2.38 -0.02 1.84 16 32 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.08 1.59 7.79 -2.39 -0.02 1.57 16 34 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.08 1.97 5.27 -2.39 -0.01 1.95 16 Total: -1.00 -61.24 277.89 0.60 -60.65 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.42 Total: 20.29 kcal Atomic # 6 Polarization: -32.46 SS G_CDS: 2.73 Total: -29.74 kcal Atomic # 7 Polarization: -82.34 SS G_CDS: -2.84 Total: -85.18 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -1.74 Total: -12.26 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -61.24 0.60 -60.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382177477.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.208 kcal (2) G-P(sol) polarization free energy of solvation -61.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds